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Volumn 11, Issue 3, 2012, Pages 1571-1581

Proteomics signature profiling (PSP): A novel contextualization approach for cancer proteomics

Author keywords

bioinformatics; HCC (hepatocellular carcinoma); liver cancer; protein networks; proteomics; systems biology

Indexed keywords

PROTEIN;

EID: 84863260908     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr200698c     Document Type: Conference Paper
Times cited : (32)

References (19)
  • 1
    • 64349094767 scopus 로고    scopus 로고
    • Tissue specificity and the human protein interaction network
    • Bossi, A.; Lehner, B. Tissue specificity and the human protein interaction network Mol. Syst. Biol. 2009, 5, 260
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 260
    • Bossi, A.1    Lehner, B.2
  • 3
    • 77956480115 scopus 로고    scopus 로고
    • Consistency, comprehensiveness, and compatibility of pathway databases
    • Soh, D.; Dong, D.; Guo, Y.; Wong, L. Consistency, comprehensiveness, and compatibility of pathway databases BMC Bioinform. 2010, 11, 449
    • (2010) BMC Bioinform. , vol.11 , pp. 449
    • Soh, D.1    Dong, D.2    Guo, Y.3    Wong, L.4
  • 4
    • 84857863460 scopus 로고    scopus 로고
    • Finding Consistent Disease Subnetworks Across Microarray Datasets
    • Soh, D.; Dong, D.; Guo, Y.; Wong, L. Finding Consistent Disease Subnetworks Across Microarray Datasets BMC Bioinform. 2011, 12 (Suppl 13) S15
    • (2011) BMC Bioinform. , vol.12 , Issue.SUPPL. 13 , pp. 15
    • Soh, D.1    Dong, D.2    Guo, Y.3    Wong, L.4
  • 5
    • 46749143346 scopus 로고    scopus 로고
    • Quantitative and temporal proteome analysis of butyrate-treated colorectal cancer cells
    • Tan, H. T.; Tan, S.; Lin, Q.; Lim, T. K.; Hew, C. L.; Chung, M. C. Quantitative and temporal proteome analysis of butyrate-treated colorectal cancer cells Mol. Cell. Proteomics 2008, 7 (6) 1174-85
    • (2008) Mol. Cell. Proteomics , vol.7 , Issue.6 , pp. 1174-85
    • Tan, H.T.1    Tan, S.2    Lin, Q.3    Lim, T.K.4    Hew, C.L.5    Chung, M.C.6
  • 6
    • 48449103315 scopus 로고    scopus 로고
    • Troglitazone-induced hepatic mitochondrial proteome expression dynamics in heterozygous Sod2(±) mice: Two-stage oxidative injury
    • Lee, Y. H.; Chung, M. C.; Lin, Q.; Boelsterli, U. A. Troglitazone-induced hepatic mitochondrial proteome expression dynamics in heterozygous Sod2(±) mice: two-stage oxidative injury Toxicol. Appl. Pharmacol. 2008, 231 (1) 43-51
    • (2008) Toxicol. Appl. Pharmacol. , vol.231 , Issue.1 , pp. 43-51
    • Lee, Y.H.1    Chung, M.C.2    Lin, Q.3    Boelsterli, U.A.4
  • 8
    • 34848889259 scopus 로고    scopus 로고
    • The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
    • Shilov, I. V.; Seymour, S. L.; Patel, A. A.; Loboda, A.; Tang, W. H.; Keating, S. P.; Hunter, C. L.; Nuwaysir, L. M.; Schaeffer, D. A. The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra Mol. Cell. Proteomics 2007, 6 (9) 1638-55
    • (2007) Mol. Cell. Proteomics , vol.6 , Issue.9 , pp. 1638-55
    • Shilov, I.V.1    Seymour, S.L.2    Patel, A.A.3    Loboda, A.4    Tang, W.H.5    Keating, S.P.6    Hunter, C.L.7    Nuwaysir, L.M.8    Schaeffer, D.A.9
  • 9
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20 (18) 3551-67
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-67
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 13
    • 40249110012 scopus 로고    scopus 로고
    • ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
    • Huang, W. L.; Tung, C. W.; Ho, S. W.; Hwang, S. F.; Ho, S. Y. ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization BMC Bioinform. 2008, 9, 80
    • (2008) BMC Bioinform. , vol.9 , pp. 80
    • Huang, W.L.1    Tung, C.W.2    Ho, S.W.3    Hwang, S.F.4    Ho, S.Y.5
  • 14
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward, J. H. Hierarchical grouping to optimize an objective function J. Am. Stat. Assoc. 1963, 58 (301) 236-44
    • (1963) J. Am. Stat. Assoc. , vol.58 , Issue.301 , pp. 236-44
    • Ward, J.H.1
  • 15
    • 49649109285 scopus 로고    scopus 로고
    • Uncovering biological network function via graphlet degree signatures
    • Milenkovic, T.; Przulj, N. Uncovering biological network function via graphlet degree signatures Cancer Inform. 2008, 6, 257-73
    • (2008) Cancer Inform. , vol.6 , pp. 257-73
    • Milenkovic, T.1    Przulj, N.2
  • 16
    • 0036790999 scopus 로고    scopus 로고
    • Transitive functional annotation by shortest-path analysis of gene expression data
    • Zhou, X.; Kao, M. C.; Wong, W. H. Transitive functional annotation by shortest-path analysis of gene expression data Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (20) 12783-8
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , Issue.20 , pp. 12783-8
    • Zhou, X.1    Kao, M.C.2    Wong, W.H.3
  • 17
    • 67650735594 scopus 로고    scopus 로고
    • Complex discovery from weighted PPI networks
    • Liu, G.; Wong, L.; Chua, H. N. Complex discovery from weighted PPI networks Bioinformatics 2009, 25 (15) 1891-7
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1891-7
    • Liu, G.1    Wong, L.2    Chua, H.N.3
  • 18
    • 34249914541 scopus 로고    scopus 로고
    • Correlation between liver metastasis of the colocalization of actin-related protein 2 and 3 complex and WAVE2 in colorectal carcinoma
    • Iwaya, K.; Oikawa, K.; Semba, S.; Tsuchiya, B.; Mukai, Y.; Otsubo, T.; Nagao, T.; Izumi, M.; Kuroda, M.; Domoto, H.; Mukai, K. Correlation between liver metastasis of the colocalization of actin-related protein 2 and 3 complex and WAVE2 in colorectal carcinoma Cancer Sci. 2007, 98 (7) 992-9
    • (2007) Cancer Sci. , vol.98 , Issue.7 , pp. 992-9
    • Iwaya, K.1    Oikawa, K.2    Semba, S.3    Tsuchiya, B.4    Mukai, Y.5    Otsubo, T.6    Nagao, T.7    Izumi, M.8    Kuroda, M.9    Domoto, H.10    Mukai, K.11
  • 19
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla, G.; Derenyi, I.; Farkas, I.; Vicsek, T. Uncovering the overlapping community structure of complex networks in nature and society Nature 2005, 435 (7043) 814-8
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-8
    • Palla, G.1    Derenyi, I.2    Farkas, I.3    Vicsek, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.