Streptomyces qinglanensis Sp. Nov., isolated from mangrove sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue PART 3, 2012, Pages 596-600

  Hu, Huo ^a,b   Lin, Hai Peng ^a   Xie, Qingyi ^a   Li, Lei ^a   Xie, Xin Qiang ^a   Hong, Kui ^a,b,c  

^a INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^b HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^c WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; GENOMIC DNA; GLUCOSE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; RIBOSE; STARCH; UREASE;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CYTOTOXICITY; GENE SEQUENCE; GENOTYPE; HYDROLYSIS; MANGROVE; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; STREPTOMYCES; STREPTOMYCES QINGLANENSIS; TEMPERATURE;

BACTERIAL TYPING TECHNIQUES; CELL WALL; CHINA; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPORES, BACTERIAL; STREPTOMYCES; VITAMIN K 2;

MYCELIUM (GENUS); STREPTOMYCES;

EID: 84863249225     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.032201-0     Document Type: Article

References (43)

1. Bentley, S. D., Chater, K. F., Cerdeño-Tárraga, A. M., Challis, G. L., Thomson, N. R., James, K. D., Harris, D. E., Quail, M. A., Kieser, H. & other authors (2002). Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417, 141-147.
2. Bérdy, J. (2005). Bioactive microbial metabolites. J Antibiot (Tokyo) 58, 1-26.
3. Chun, J., Youn, H. D., Yim, Y.-I., Lee, H., Kim, M. Y., Hah, Y. C. & Kang, S.-O. (1997). Streptomyces seoulensis sp. nov. Int J Syst Bacteriol 47, 492-498.
4. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). Ez Taxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
6. Euzéby, J. (2010). List of prokaryotic names with standing in nomenclature. http://www.bacterio.cict.fr/s/streptomycesa.html
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Gauze, G. F., Preobrazhenskaya, T. P., Sveshnikova, M. A., Terekhova, L. P. & Maksimova, T. S. (1983). Opredelitel' aktinomitsetov(Manual of Actinomycetes). Moscow: Nauka.
10. Goodfellow, M., Kumar, Y., Labeda, D. P. & Sembiring, L. (2007). The Streptomyces violaceusniger clade: a home for streptomycetes with rugose ornamented spores. Antonie van Leeuwenhoek 92, 173-199.
11. Hong, K., Gao, A. H., Xie, Q. Y., Gao, H., Zhuang, L., Lin, H. P., Yu, H. P., Li, J., Yao, X. S. & other authors (2009). Actinomycetes for marine drug discovery isolated from mangrove soils and plants in China. Mar Drugs 7, 24-44.
12. Hopkins, D. W., Macnaughton, S. J. & O'Donnell, A. G. (1991). A dispersion and differential centrifugation technique for representatively sampling microorganisms from soil. Soil Biol Biochem 23, 217-225.
13. Ikeda, H., Ishikawa, J., Hanamoto, A., Shinose, M., Kikuchi, H., Shiba, T., Sakaki, Y., Hattori, M. & Omura, S. (2003). Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21, 526-531.
14. Iwai, H. & Takahashi, Y. (1992). Selection of microbial sources of bioactive compounds. In The Search for Bioactive Compounds from Microorganisms, pp. 281-302. Edited by S. Omura. New York: Springer.
15. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
16. Kämpfer, P., Kroppenstedt, R. M. & Dott, W. (1991). A numerical classification of the genera Streptomyces and Streptoverticillium using miniaturized physiological tests. J Gen Microbiol 137, 1831-1891.
17. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
18. Khan, T. K., Tamura, T., Takagi, M. & Shin-ya, K. (2010). Streptomyces tateyamensis sp. nov., Streptomyces marinus sp. nov. and Streptomyces haliclonae sp. nov., isolated from the marine sponge Haliclona sp. Int J Syst Evol Microbiol 60, 2775-2779.
19. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
20. Labeda, D. P., Lechevalier, M. P. & Testa, R. T. (1997). Streptomyces stramineus sp. nov., a new species of the verticillate streptomycetes. Int J Syst Bacteriol 47, 747-753.
21. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 22-291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
22. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
23. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. K. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
24. Oliver, J. D. & Colwell, R. R. (1973). Extractable lipids of gramnegative marine bacteria: fatty-acid composition. Int J Syst Bacteriol 23, 442-458.
25. Ōmura, S., Ikeda, H., Ishikawa, J., Hanamoto, A., Takahashi, C., Shinose, M., Takahashi, Y., Horikawa, H., Nakazawa, H. & other authors (2001). Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci U S A 98, 12215-12220.
26. Pospiech, A. & Neumann, B. (1995). A versatile quick-prep of genomic DNA from gram-positive bacteria. Trends Genet 11, 217-218.
27. Saintpierre-Bonaccio, D., Amir, H., Pineau, R., Lemriss, S. & Goodfellow, M. (2004). Streptomyces ferralitis sp. nov., a novel streptomycete isolated from a New-Caledonian ultramafic soil. Int J Syst Evol Microbiol 54, 2061-2065.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Sanglier, J. J., Haag, H., Huck, T. A. & Fehr, T. (1996). Review of actinomycetes compounds 1990-1995. Expert Opin Investig Drugs 5, 207-223.
30. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, Technical Note 101. Newark, DE: Microbial ID.
31. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
32. Sui, J. L., Xu, X. X., Qu, Z., Lin, H. P., Ruan, J. S. & Hong, K. (2011). Streptomyces sanyensis sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol 61, 1632-1637.
33. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4, molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
34. Waksman, S. A. & Henrici, A. T. (1943). The nomenclature and classification of the actinomycetes. J Bacteriol 46, 337-341.
35. Wang, C., Xu, X. X., Qu, Z., Wang, H. L., Lin, H. P., Xie, Q. Y., Ruan, J. S. & Hong, K. (2011). Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. Int J Syst Evol Microbiol 61, 320-324.
36. Ward, A. C. & Goodfellow, M. (2004). Phylogeny and functionality: taxonomy as a roadmap to genes. In Microbial Diversity and Bioprospecting, pp. 288-313. Edited by A. T. Bull. Washington, DC: American Society for Microbiology.
37. Watve, M. G., Tickoo, R., Jog, M. M. & Bhole, B. D. (2001). How many antibiotics are produced by the genus Streptomyces? Arch Microbiol 176, 386-390.
38. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
39. Wellington, E. M. H. & Williams, S. T. (1978). Preservation of actinomycete inoculum in frozen glycerol. Microbiol Lett 6, 151-157.
40. Wiese, J., Jiang, Y., Tang, S. K., Thiel, V., Schmaljohann, R., Xu, L. H., Jiang, C. L. & Imhoff, J. F. (2008). A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58, 1324-1331.
41. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
42. Xiao, J., Wang, Y., Luo, Y. X., Xie, S. J., Ruan, J. S. & Xu, J. (2009). Streptomyces avicenniae sp. nov., a novel actinomycete isolated from the rhizosphere of the mangrove plant Avicennia mariana. Int J Syst Evol Microbiol 59, 2624-2628.
43. Xu, J., Wang, Y., Xu, J., Xie, S. J., Xiao, J. & Ruan, J. S. (2009). Streptomyces xiamenisis sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol 59, 472-476.