-
1
-
-
0037193987
-
Structure and function of antifreeze proteins
-
Davies, P.L.; Baardsnes, J.; Kuiper, M.J.; Walker, V.K. Structure and function of antifreeze proteins. Philos. Trans. R. Soc. Lond. B 2002, 357, 927-935.
-
(2002)
Philos. Trans. R. Soc. Lond. B
, vol.357
, pp. 927-935
-
-
Davies, P.L.1
Baardsnes, J.2
Kuiper, M.J.3
Walker, V.K.4
-
2
-
-
70350160201
-
Simultaneous freeze tolerance and avoidance in individual fungus gnats, Exechia nugatoria
-
Sformo, T.; Kohl, F.; McIntyre, J.; Kerr, P.; Duman, J.G.; Barnes, B.M. Simultaneous freeze tolerance and avoidance in individual fungus gnats, Exechia nugatoria. J. Comp. Physiol. B 2009, 179, 897-902.
-
(2009)
J. Comp. Physiol. B
, vol.179
, pp. 897-902
-
-
Sformo, T.1
Kohl, F.2
McIntyre, J.3
Kerr, P.4
Duman, J.G.5
Barnes, B.M.6
-
3
-
-
84863278885
-
-
Academic Press: New York, NY, USA
-
Lewitt, J. Responses of Plants to Environmental Stresses; Academic Press: New York, NY, USA, 1980; Volume 1, pp. 269-295.
-
(1980)
Responses of Plants to Environmental Stresses
, vol.1
, pp. 269-295
-
-
Lewitt, J.1
-
4
-
-
0002554999
-
Supercooling and osmoregulation in arctic fish
-
Scholander, P.F.; van Dam, L.; Kanwisher, J.W.; Hammel, H.T.; Gordon, M.S. Supercooling and osmoregulation in arctic fish. J. Cell. Comp. Physiol. 1957, 49, 5-24.
-
(1957)
J. Cell. Comp. Physiol
, vol.49
, pp. 5-24
-
-
Scholander, P.F.1
van Dam, L.2
Kanwisher, J.W.3
Hammel, H.T.4
Gordon, M.S.5
-
5
-
-
0001772957
-
Seasonal changes in freezing tolerance, moisture content and dry weight of three temperate grasses
-
Moriyama, M.; Abe, J.; Yoshida, M.; Tsurumi, Y.; Nakayama, S. Seasonal changes in freezing tolerance, moisture content and dry weight of three temperate grasses. Grassl. Sci. 1995, 41, 21-25.
-
(1995)
Grassl. Sci
, vol.41
, pp. 21-25
-
-
Moriyama, M.1
Abe, J.2
Yoshida, M.3
Tsurumi, Y.4
Nakayama, S.5
-
6
-
-
0030963597
-
Origin of antifreeze protein genes: A cool tale in molecular evolution
-
Logsdon, J.M.; Doolittle, W.F. Origin of antifreeze protein genes: A cool tale in molecular evolution. Proc. Natl. Acad. Sci. USA 1997, 94, 3485-3487.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3485-3487
-
-
Logsdon, J.M.1
Doolittle, W.F.2
-
7
-
-
0032982510
-
Structure, function and evolution of antifreeze proteins
-
Ewart, K.V.; Lin, Q.; Hew, C.L. Structure, function and evolution of antifreeze proteins. Cell. Mol. Life Sci. 1999, 55, 271-283.
-
(1999)
Cell. Mol. Life Sci
, vol.55
, pp. 271-283
-
-
Ewart, K.V.1
Lin, Q.2
Hew, C.L.3
-
8
-
-
0037193987
-
Structure and function of antifreeze proteins
-
Davies, P.L.; Baardsnes, J.; Kuiper, M.J.; Walker, V.K. Structure and function of antifreeze proteins. Philos. Trans. R. Soc. Lond. B 2002, 357, 927-935.
-
(2002)
Philos. Trans. R. Soc. Lond. B
, vol.357
, pp. 927-935
-
-
Davies, P.L.1
Baardsnes, J.2
Kuiper, M.J.3
Walker, V.K.4
-
10
-
-
0031771585
-
Evolution of the diverse antifreeze proteins
-
Cheng, C.H. Evolution of the diverse antifreeze proteins. Curr. Opin. Genet. Dev. 1998, 8, 715-720.
-
(1998)
Curr. Opin. Genet. Dev
, vol.8
, pp. 715-720
-
-
Cheng, C.H.1
-
11
-
-
0026740537
-
Plant thermal hysteresis proteins
-
Urrutia, M.E.; Duman, J.G.; Knight, C.A. Plant thermal hysteresis proteins. Biochim. Biophys. Acta 1992, 1121, 199-206.
-
(1992)
Biochim. Biophys. Acta
, vol.1121
, pp. 199-206
-
-
Urrutia, M.E.1
Duman, J.G.2
Knight, C.A.3
-
12
-
-
0035035047
-
Winter rye antifreeze activity increases in response to cold and drought, but not abscisic acid
-
Yu, X.M.; Griffith, M. Winter rye antifreeze activity increases in response to cold and drought, but not abscisic acid. Physiol. Plant. 2001, 112, 78-86.
-
(2001)
Physiol. Plant
, vol.112
, pp. 78-86
-
-
Yu, X.M.1
Griffith, M.2
-
13
-
-
0028835687
-
Antifreeze proteins and their potential use in frozen foods
-
Griffith, M.; Ewart, K.V. Antifreeze proteins and their potential use in frozen foods. Biotechnol. Adv. 1995, 13, 375-402.
-
(1995)
Biotechnol. Adv
, vol.13
, pp. 375-402
-
-
Griffith, M.1
Ewart, K.V.2
-
14
-
-
0034573551
-
Biotechnological applications of plant freezing associated proteins
-
Breton, G.; Danyluk, J.; Ouellet, F.; Sarhan, F. Biotechnological applications of plant freezing associated proteins. Biotechnol. Annu. Rev. 2000, 6, 59-101.
-
(2000)
Biotechnol. Annu. Rev
, vol.6
, pp. 59-101
-
-
Breton, G.1
Danyluk, J.2
Ouellet, F.3
Sarhan, F.4
-
15
-
-
64749100837
-
Predicting DNA- and RNA-binding proteins from sequences with kernel methods
-
Shao, X.; Tian, Y.; Wu, L.; Wang, Y.; Jing, L.; Deng, N. Predicting DNA- and RNA-binding proteins from sequences with kernel methods. J. Theor. Biol. 2009, 258, 289-293.
-
(2009)
J. Theor. Biol
, vol.258
, pp. 289-293
-
-
Shao, X.1
Tian, Y.2
Wu, L.3
Wang, Y.4
Jing, L.5
Deng, N.6
-
16
-
-
34548606295
-
Review: Recent progresses in protein subcellular location prediction
-
Chou, K.C.; Shen, H.B. Review: Recent progresses in protein subcellular location prediction. Anal. Biochem. 2007, 370, 1-16.
-
(2007)
Anal. Biochem
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
17
-
-
39449105071
-
Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou, K.C.; Shen, H.B. Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc. 2008, 3, 153-162.
-
(2008)
Nat. Protoc
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
18
-
-
3242792729
-
Review: Structural bioinformatics and its impact to biomedical science
-
Chou, K.C. Review: Structural bioinformatics and its impact to biomedical science. Curr. Med. Chem. 2004, 11, 2105-2134.
-
(2004)
Curr. Med. Chem
, vol.11
, pp. 2105-2134
-
-
Chou, K.C.1
-
19
-
-
53149132374
-
ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
-
Chou, K.C.; Shen, H.B. ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem. Biophys. Res. Commun. 2008, 376, 321-325.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.376
, pp. 321-325
-
-
Chou, K.C.1
Shen, H.B.2
-
20
-
-
34447095147
-
MemType-2L: A web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
-
Chou, K.C.; Shen, H.B. MemType-2L: A web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem. Biophys. Res. Commun. 2007, 360, 339-345.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.360
, pp. 339-345
-
-
Chou, K.C.1
Shen, H.B.2
-
21
-
-
0041848237
-
Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
-
Chou, K.C.; Wei, D.Q.; Zhong, W.Z. Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS. Biochem. Biophys. Res. Commun. 2003, 308, 148-151.
-
(2003)
Biochem. Biophys. Res. Commun
, vol.308
, pp. 148-151
-
-
Chou, K.C.1
Wei, D.Q.2
Zhong, W.Z.3
-
22
-
-
37349107492
-
Computational approach to drug design for oxazolidinones as antibacterial agents
-
Li, Y.; Wei, D.Q.; Gao, W.N.; Gao, H.; Liu, B.N.; Huang, C.J.; Xu, W.R.; Liu, D.K.; Chen, H.F.; Chou, K.C. Computational approach to drug design for oxazolidinones as antibacterial agents. Med. Chem. 2007, 3, 576-582.
-
(2007)
Med. Chem
, vol.3
, pp. 576-582
-
-
Li, Y.1
Wei, D.Q.2
Gao, W.N.3
Gao, H.4
Liu, B.N.5
Huang, C.J.6
Xu, W.R.7
Liu, D.K.8
Chen, H.F.9
Chou, K.C.10
-
23
-
-
38849107581
-
Molecular modeling of two CYP2C19 SNPs and its implications for personalized drug design
-
Wang, J.F.; Wei, D.Q.; Chen, C.; Li, Y.; Chou, K.C. Molecular modeling of two CYP2C19 SNPs and its implications for personalized drug design. Protein Pept. Lett. 2008, 15, 27-32.
-
(2008)
Protein Pept. Lett
, vol.15
, pp. 27-32
-
-
Wang, J.F.1
Wei, D.Q.2
Chen, C.3
Li, Y.4
Chou, K.C.5
-
24
-
-
35348973511
-
EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
-
Shen, H.B.; Chou, K.C. EzyPred: A top-down approach for predicting enzyme functional classes and subclasses. Biochem. Biophys. Res. Commun. 2007, 364, 53-59.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.364
, pp. 53-59
-
-
Shen, H.B.1
Chou, K.C.2
-
25
-
-
34247544233
-
Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
-
Chou, K.C.; Shen, H.B. Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides. Biochem. Biophys. Res. Commun. 2007, 357, 633-640.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.357
, pp. 633-640
-
-
Chou, K.C.1
Shen, H.B.2
-
26
-
-
34748902270
-
Signal-3L: A 3-layer approach for predicting signal peptide. Biochem
-
Shen, H.B.; Chou, K.C. Signal-3L: A 3-layer approach for predicting signal peptide. Biochem. Biophys. Res. Commun. 2007, 363, 297-303.
-
(2007)
Biophys. Res. Commun
, vol.363
, pp. 297-303
-
-
Shen, H.B.1
Chou, K.C.2
-
27
-
-
78649326452
-
AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
-
Kandaswamy, K.K.; Chou, K.; Martinetz, T.; Möller, S.; Suganthan, P.N.; Sridharan, S.; Ganesan, P. AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties. J. Theor. Biol. 2011, 270, 56-62.
-
(2011)
J. Theor. Biol
, vol.270
, pp. 56-62
-
-
Kandaswamy, K.K.1
Chou, K.2
Martinetz, T.3
Möller, S.4
Suganthan, P.N.5
Sridharan, S.6
Ganesan, P.7
-
28
-
-
84863266270
-
-
AFP_PSSM. Available online, accessed on 28 December
-
AFP_PSSM. Available online: http://59.73.198.144/AFP_PSSM/ (accessed on 28 December 2011).
-
(2011)
-
-
-
29
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
-
Chou, K.C. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol. 2011, 273, 236-247.
-
(2011)
J. Theor. Biol
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
30
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein database
-
Li, W.; Jaroszewski, L.; Odzik, G.A. Clustering of highly homologous sequences to reduce the size of large protein database. Bioinformatics 2001, 17, 282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Odzik, G.A.3
-
31
-
-
84863288516
-
-
AFP-dataset. Available online, accessed on 16 June
-
AFP-dataset. Available online: http://www3.ntu.edu.sg/home/EPNSugan/index_files/AFP_Pred.htm (accessed on 16 June 2011).
-
(2011)
-
-
-
32
-
-
84055217653
-
Prediction of lysine ubiquitylation with ensemble classifier and feature selection
-
Zhao, X.W.; Li, X.T.; Ma, Z.Q.; Yin, M.H. Prediction of lysine ubiquitylation with ensemble classifier and feature selection. Int. J. Mol. Sci. 2011, 12, 8347-8361.
-
(2011)
Int. J. Mol. Sci
, vol.12
, pp. 8347-8361
-
-
Zhao, X.W.1
Li, X.T.2
Ma, Z.Q.3
Yin, M.H.4
-
33
-
-
34047151404
-
Improving the accuracy of transmembrane protein topology prediction using evolutionary information
-
Jones, D.T. Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics 2007, 23, 538-544.
-
(2007)
Bioinformatics
, vol.23
, pp. 538-544
-
-
Jones, D.T.1
-
34
-
-
77953622066
-
Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile
-
Ruchi, V.; Grish, C.V.; Raghava, G.P.S. Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile. Amino Acids 2010, 39, 101-110.
-
(2010)
Amino Acids
, vol.39
, pp. 101-110
-
-
Ruchi, V.1
Grish, C.V.2
Raghava, G.P.S.3
-
35
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schaffer, A.; Aravind, L.; Madden, T.; Shavirin, S.; Spouge, J.; Wolf, Y.; Koonin, E.; Altschul, S. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res. 2001, 29, 2994-3005.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2994-3005
-
-
Schaffer, A.1
Aravind, L.2
Madden, T.3
Shavirin, S.4
Spouge, J.5
Wolf, Y.6
Koonin, E.7
Altschul, S.8
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.; Madden, T.; Schaffer, A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 1997, 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
37
-
-
84863277480
-
-
Swiss-Prot database. Available online, accessed on 16 October
-
Swiss-Prot database. Available online: http://www.uniprot.org/uniprot/?query=reviewed%3Ayes (accessed on 16 October 2011).
-
(2011)
-
-
-
38
-
-
38649127567
-
Identification of DNA-binding proteins using support vector machines and evolutionary profiles
-
doi:10.1186/1471-2105-8-463
-
Kumar, M.; Gromiha, M.M.; Raghava, G.P.S. Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinforma. 2007, 8, doi:10.1186/1471-2105-8-463.
-
(2007)
BMC Bioinforma
, vol.8
-
-
Kumar, M.1
Gromiha, M.M.2
Raghava, G.P.S.3
-
39
-
-
77958497871
-
Prediction of cyclin proteins using Chou's pseudo amino acid composition
-
Mohabatkar, H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett. 2010, 17, 1207-1214.
-
(2010)
Protein Pept. Lett
, vol.17
, pp. 1207-1214
-
-
Mohabatkar, H.1
-
40
-
-
77649337793
-
Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
-
Esmaeili, M.; Mohabatkar, H.; Mohsenzadeh, S. Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol. 2010, 263, 203-209.
-
(2010)
J. Theor. Biol
, vol.263
, pp. 203-209
-
-
Esmaeili, M.1
Mohabatkar, H.2
Mohsenzadeh, S.3
-
41
-
-
42749090472
-
The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
Lin, H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol. 2008, 252, 350-356.
-
(2008)
J. Theor. Biol
, vol.252
, pp. 350-356
-
-
Lin, H.1
-
42
-
-
67349244013
-
Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
-
Zeng, Y.H.; Guo, Y.Z.; Xiao, R.Q.; Yang, L.; Yu, L.Z.; Li, M.L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol. 2009, 259, 366-372.
-
(2009)
J. Theor. Biol
, vol.259
, pp. 366-372
-
-
Zeng, Y.H.1
Guo, Y.Z.2
Xiao, R.Q.3
Yang, L.4
Yu, L.Z.5
Li, M.L.6
-
43
-
-
61549096128
-
Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
-
Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett. 2009, 16, 27-31.
-
(2009)
Protein Pept. Lett
, vol.16
, pp. 27-31
-
-
Chen, C.1
Chen, L.2
Zou, X.3
Cai, P.4
-
44
-
-
38549155006
-
AAindex: Amino acid index database, progress report 2008
-
Kawashima, S.; Pokarowski, P.; Pokarowska, M.; Kolinski, A.; Katayama, T.; Kanehisa, M. AAindex: Amino acid index database, progress report 2008. Nucleic Acids Res. 2008, 36, D202-D205.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
Kanehisa, M.6
-
47
-
-
84863288515
-
-
LIBSVM. Available online, accessed on 23 June
-
LIBSVM. Available online: http://www.csite.ntu.edu.tw/~sjlin/libsvm (accessed on 23 June 2011).
-
(2011)
-
-
-
48
-
-
0029157083
-
Review: Prediction of protein structural classes
-
Chou, K.C.; Zhang, C.T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol. 1995, 30, 275-349.
-
(1995)
Crit. Rev. Biochem. Mol. Biol
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
49
-
-
39449105071
-
Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou, K.C.; Shen, H.B. Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc. 2008, 3, 153-162.
-
(2008)
Nat. Protoc
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
|