메뉴 건너뛰기




Volumn 445, Issue 2, 2012, Pages 167-174

Architecture of the catalytic HPN motif is conserved in all E2 conjugating enzymes

Author keywords

Catalytic pocket; Hydrogen bonding; NMR spectroscopy; Structure; Ubiquitin

Indexed keywords

ASPARAGINE; CARBON 13; COMPLEMENTARY DNA; HISTIDINE; IMIDAZOLE; NITROGEN 15; PROLINE; UBIQUITIN; UBIQUITIN CONJUGATING ENZYME E2;

EID: 84863197977     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20120504     Document Type: Article
Times cited : (29)

References (46)
  • 2
    • 33744911377 scopus 로고    scopus 로고
    • Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway
    • DOI 10.1038/nsmb1104, PII N1104
    • Yunus, A. A. and Lima, C. D. (2006) Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway. Nat. Struct. Mol. Biol. 13, 491-499 (Pubitemid 43848903)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.6 , pp. 491-499
    • Yunus, A.A.1    Lima, C.D.2
  • 3
    • 20444384040 scopus 로고    scopus 로고
    • Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex
    • DOI 10.1038/nature03588
    • Reverter, D. and Lima, C. D. (2005) Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex. Nature 435, 687-692 (Pubitemid 40825514)
    • (2005) Nature , vol.435 , Issue.7042 , pp. 687-692
    • Reverter, D.1    Lima, C.D.2
  • 4
    • 42649124278 scopus 로고    scopus 로고
    • Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation
    • Burroughs, A. M., Jaffee, M., Iyer, L. M. and Aravind, L. (2008) Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation. J. Struct. Biol. 162, 205-218
    • (2008) J. Struct. Biol. , vol.162 , pp. 205-218
    • Burroughs, A.M.1    Jaffee, M.2    Iyer, L.M.3    Aravind, L.4
  • 5
    • 0029821534 scopus 로고    scopus 로고
    • The tail of a ubiquitin-conjugating enzyme redirects multi-ubiquitin chain synthesis from the lysine 48-linked configuration to a novel nonlysine- linked form
    • DOI 10.1074/jbc.271.46.28766
    • Hodgins, R., Gwozd, C., Arnason, T., Cummings, M. and Ellison, M. J. (1996) The tail of a ubiquitin-conjugating enzyme redirects multi-ubiquitin chain synthesis from the lysine 48-linked configuration to a novel non-lysine-linked form. J. Biol. Chem. 271, 28766-28771 (Pubitemid 26382571)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.46 , pp. 28766-28771
    • Hodgins, R.1    Gwozd, C.2    Arnason, T.3    Cummings, M.4    Ellison, M.J.5
  • 6
    • 79952438020 scopus 로고    scopus 로고
    • Association of the disordered C-terminus of CDC34 with a catalytically bound ubiquitin
    • Spratt, D. E. and Shaw, G. S. (2011) Association of the disordered C-terminus of CDC34 with a catalytically bound ubiquitin. J. Mol. Biol. 407, 425-438
    • (2011) J. Mol. Biol. , vol.407 , pp. 425-438
    • Spratt, D.E.1    Shaw, G.S.2
  • 7
    • 73149098116 scopus 로고    scopus 로고
    • The structure of the UbcH8-ubiquitin complex shows a unique ubiquitin interaction site
    • Serniwka, S. A. and Shaw, G. S. (2009) The structure of the UbcH8-ubiquitin complex shows a unique ubiquitin interaction site. Biochemistry 48, 12169-12179
    • (2009) Biochemistry , vol.48 , pp. 12169-12179
    • Serniwka, S.A.1    Shaw, G.S.2
  • 8
    • 69149088655 scopus 로고    scopus 로고
    • 15N resonance assignments for the human E2 conjugating enzyme, UbcH7
    • 15N resonance assignments for the human E2 conjugating enzyme, UbcH7. Biomol. NMR Assign. 2, 21-23
    • (2008) Biomol. NMR Assign. , vol.2 , pp. 21-23
    • Serniwka, S.A.1    Shaw, G.S.2
  • 9
    • 0006925492 scopus 로고
    • Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity
    • Kay, L. E., Keifer, P. and Saarinen, T. (1992) Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity. J. Am. Chem. Soc. 114, 10663-10665
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 10663-10665
    • Kay, L.E.1    Keifer, P.2    Saarinen, T.3
  • 10
    • 44049109615 scopus 로고
    • An efficient method for sequential backbone assignment of medium-sized isotopically enriched proteins
    • Grzesiek, S. and Bax, A. (1992) An efficient method for sequential backbone assignment of medium-sized isotopically enriched proteins. J. Magn. Reson. 99, 201-207
    • (1992) J. Magn. Reson. , vol.99 , pp. 201-207
    • Grzesiek, S.1    Bax, A.2
  • 12
    • 43949167657 scopus 로고
    • HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the α-carbon and β-carbon resonances in proteins
    • Wittekind, M. and Mueller, L. (1993) HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the α-carbon and β-carbon resonances in proteins. J. Magn. Reson. B101, 201-205
    • (1993) J. Magn. Reson. , vol.B101 , pp. 201-205
    • Wittekind, M.1    Mueller, L.2
  • 13
    • 9444245493 scopus 로고
    • Correlating backbone amide and side-chain resonances in larger proteins by multiple relayed triple resonance NMR
    • Grzesiek, S. and Bax, A. (1992) Correlating backbone amide and side-chain resonances in larger proteins by multiple relayed triple resonance NMR. J. Am. Chem. Soc. 114, 6291-6293
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 6291-6293
    • Grzesiek, S.1    Bax, A.2
  • 14
    • 43949175202 scopus 로고
    • Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization
    • Grzesiek, S., Anglister, J. and Bax, A. (1993) Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization. J. Magn. Reson. B101, 114-119
    • (1993) J. Magn. Reson. , vol.B101 , pp. 114-119
    • Grzesiek, S.1    Anglister, J.2    Bax, A.3
  • 15
    • 34447505016 scopus 로고
    • Enhanced-sensitivity triple-resonance spectroscopy with minimal H2O saturation
    • Kay, L. E., Xu, G. Y. and Yamazaki, T. (1994) Enhanced-sensitivity triple-resonance spectroscopy with minimal H2O saturation. J. Magn. Reson. A109, 129-133
    • (1994) J. Magn. Reson. , vol.A109 , pp. 129-133
    • Kay, L.E.1    Xu, G.Y.2    Yamazaki, T.3
  • 16
    • 12044258763 scopus 로고
    • 2-Dimensional NMR experiments for correlating C-13-β and H-1-δ/ε chemical-shifts of aromatic residues in C-13-labeled proteins via scalar couplings
    • Yamazaki, T., Forman-Kay, J. D. and Kay, L. E. (1993) 2-Dimensional NMR experiments for correlating C-13-β and H-1-δ/ε chemical-shifts of aromatic residues in C-13-labeled proteins via scalar couplings. J. Am. Chem. Soc. 115, 11054-11055
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 11054-11055
    • Yamazaki, T.1    Forman-Kay, J.D.2    Kay, L.E.3
  • 18
    • 44949267857 scopus 로고
    • Improved proton-detected heteronuclear correlation using gradient-enhanced Z and Zz filters
    • John, B. K., Plant, D. and Hurd, R. E. (1993) Improved proton-detected heteronuclear correlation using gradient-enhanced Z and Zz filters. J. Magn. Reson. A101, 113-117
    • (1993) J. Magn. Reson. , vol.A101 , pp. 113-117
    • John, B.K.1    Plant, D.2    Hurd, R.E.3
  • 19
    • 0035215289 scopus 로고    scopus 로고
    • Amide proton temperature coefficients as hydrogen bond indicators in proteins
    • DOI 10.1023/A:1012911329730
    • Cierpicki, T. and Otlewski, J. (2001) Amide proton temperature coefficients as hydrogen bond indicators in proteins. J. Biomol. NMR 21, 249-261 (Pubitemid 33133425)
    • (2001) Journal of Biomolecular NMR , vol.21 , Issue.3 , pp. 249-261
    • Cierpicki, T.1    Otlewski, J.2
  • 20
    • 0036386164 scopus 로고    scopus 로고
    • Hydrogen bonds in human ubiquitin reflected in temperature coefficients of amide protons
    • Cierpicki, T., Zhukov, I., Byrd, R. A. and Otlewski, J. (2002) Hydrogen bonds in human ubiquitin reflected in temperature coefficients of amide protons. J. Magn. Reson. 157, 178-180
    • (2002) J. Magn. Reson. , vol.157 , pp. 178-180
    • Cierpicki, T.1    Zhukov, I.2    Byrd, R.A.3    Otlewski, J.4
  • 21
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on unix pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J. and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on unix pipes. J. Biomol. NMR 6, 277-293
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 22
    • 34249765651 scopus 로고
    • NMRView: A computer-program for the visualization and analysis of NMR data
    • Johnson, B. A. and Blevins, R. A. (1994) NMRView: a computer-program for the visualization and analysis of NMR data. J. Biomol. NMR 4, 603-614
    • (1994) J. Biomol. NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 23
    • 0026597879 scopus 로고
    • The chemical-shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
    • Wishart, D. S., Sykes, B. D. and Richards, F. M. (1992) The chemical-shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31, 1647-1651
    • (1992) Biochemistry , vol.31 , pp. 1647-1651
    • Wishart, D.S.1    Sykes, B.D.2    Richards, F.M.3
  • 24
    • 0028393784 scopus 로고
    • The C-13 chemical-shift index: A simple method for the identification of protein secondary structure using C-13 chemical-shift data
    • Wishart, D. S. and Sykes, B. D. (1994) The C-13 chemical-shift index: a simple method for the identification of protein secondary structure using C-13 chemical-shift data. J. Biomol. NMR 4, 171-180
    • (1994) J. Biomol. NMR , vol.4 , pp. 171-180
    • Wishart, D.S.1    Sykes, B.D.2
  • 25
    • 0034788322 scopus 로고    scopus 로고
    • Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail
    • DOI 10.1016/S0969-2126(01)00657-8, PII S0969212601006578
    • Hamilton, K. S., Ellison, M. J., Barber, K. R., Williams, R. S., Huzil, J. T., McKenna, S., Ptak, C., Glover, M. and Shaw, G. S. (2001) Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail. Structure 9, 897-904 (Pubitemid 32972156)
    • (2001) Structure , vol.9 , Issue.10 , pp. 897-904
    • Hamilton, K.S.1    Ellison, M.J.2    Barber, K.R.3    Williams, R.S.4    Huzil, J.T.5    McKenna, S.6    Ptak, C.7    Glover, M.8    Shaw, G.S.9
  • 26
    • 8744284437 scopus 로고    scopus 로고
    • Solution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly
    • DOI 10.1074/jbc.M409576200
    • Merkley, N. and Shaw, G. S. (2004) Solution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly. J. Biol. Chem. 279, 47139-47147 (Pubitemid 39523129)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.45 , pp. 47139-47147
    • Merkley, N.1    Shaw, G.S.2
  • 27
    • 0036180252 scopus 로고    scopus 로고
    • Letter to the Editor: The NMR structure of the class I human ubiquitin-conjugating enzyme 2b
    • Miura, T., Klaus, W., Ross, A., Guntert, P. and Senn, H. (2002) Letter to the Editor: the NMR structure of the class I human ubiquitin-conjugating enzyme 2b. J. Biomol. NMR 22, 89-92
    • (2002) J. Biomol. NMR , vol.22 , pp. 89-92
    • Miura, T.1    Klaus, W.2    Ross, A.3    Guntert, P.4    Senn, H.5
  • 30
    • 77951244767 scopus 로고    scopus 로고
    • Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2
    • Ju, T., Bocik, W., Majumdar, A. and Tolman, J. R. (2010) Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2. Proteins 78, 1291-1301
    • (2010) Proteins , vol.78 , pp. 1291-1301
    • Ju, T.1    Bocik, W.2    Majumdar, A.3    Tolman, J.R.4
  • 31
    • 0032602773 scopus 로고    scopus 로고
    • Backbone resonance assignments of human UBC9
    • Liu, Q., Shen, B. H., Chen, D. J. and Chen, Y. (1999) Backbone resonance assignments of human UBC9. J. Biomol. NMR 13, 89-90
    • (1999) J. Biomol. NMR , vol.13 , pp. 89-90
    • Liu, Q.1    Shen, B.H.2    Chen, D.J.3    Chen, Y.4
  • 32
    • 33947721445 scopus 로고    scopus 로고
    • Structure, interactions, and dynamics of the RING domain from human TRAF6
    • DOI 10.1110/ps.062358007
    • Mercier, P., Lewis, M. J., Hau, D. D., Saltibus, L. F., Xiao, W. and Spyracopoulos, L. (2007) Structure, interactions, and dynamics of the RING domain from human TRAF6. Protein Sci. 16, 602-614 (Pubitemid 46506989)
    • (2007) Protein Science , vol.16 , Issue.4 , pp. 602-614
    • Mercier, P.1    Lewis, M.J.2    Hau, D.D.3    Saltibus, L.F.4    Xiao, W.5    Spyracopoulos, L.6
  • 33
    • 79952290609 scopus 로고    scopus 로고
    • The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2
    • Wickliffe, K. E., Lorenz, S., Wemmer, D. E., Kuriyan, J. and Rape, M. (2011) The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2. Cell 144, 769-781
    • (2011) Cell , vol.144 , pp. 769-781
    • Wickliffe, K.E.1    Lorenz, S.2    Wemmer, D.E.3    Kuriyan, J.4    Rape, M.5
  • 34
    • 0021105573 scopus 로고
    • Protein conformation and proton nuclear-magnetic-resonance chemical shifts
    • Pardi, A., Wagner, G. and Wuthrich, K. (1983) Protein conformation and proton nuclear-magnetic-resonance chemical shifts. Eur. J. Biochem. 137, 445-454
    • (1983) Eur. J. Biochem. , vol.137 , pp. 445-454
    • Pardi, A.1    Wagner, G.2    Wuthrich, K.3
  • 35
    • 0018801741 scopus 로고
    • Ring current effects in the conformation dependent NMR chemical-shifts of aliphatic protons in the basic pancreatic trypsin-inhibitor
    • Perkins, S. J. and Wuthrich, K. (1979) Ring current effects in the conformation dependent NMR chemical-shifts of aliphatic protons in the basic pancreatic trypsin-inhibitor. Biochim. Biophys. Acta 576, 409-423
    • (1979) Biochim. Biophys. Acta , vol.576 , pp. 409-423
    • Perkins, S.J.1    Wuthrich, K.2
  • 36
    • 0036756444 scopus 로고    scopus 로고
    • Direct NMR observation and DFT calculations of a hydrogen bond at the active site of a 44 kDa enzyme
    • DOI 10.1023/A:1020697627485
    • Eletsky, A., Heinz, T., Moreira, O., Kienhofer, A., Hilvert, D. and Pervushin, K. (2002) Direct NMR observation and DFT calculations of a hydrogen bond at the active site of a 44 kDa enzyme. J. Biomol. NMR 24, 31-39 (Pubitemid 35314758)
    • (2002) Journal of Biomolecular NMR , vol.24 , Issue.1 , pp. 31-39
    • Eletsky, A.1    Heinz, T.2    Moreira, O.3    Kienhofer, A.4    Hilvert, D.5    Pervushin, K.6
  • 37
    • 0027456412 scopus 로고
    • Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated III(Glc), a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques
    • Pelton, J. G., Torchia, D. A., Meadow, N. D. and Roseman, S. (1993) Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques. Protein Sci. 2, 543-558 (Pubitemid 23119305)
    • (1993) Protein Science , vol.2 , Issue.4 , pp. 543-558
    • Pelton, J.G.1    Torchia, D.A.2    Meadow, N.D.3    Roseman, S.4
  • 39
    • 0000037162 scopus 로고    scopus 로고
    • Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites
    • Bachovchin, W. W. (2001) Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites. Magn. Reson. Chem. 39, S199-S213
    • (2001) Magn. Reson. Chem. , vol.39
    • Bachovchin, W.W.1
  • 43
    • 84856812305 scopus 로고    scopus 로고
    • Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2
    • Gareau, J. R., Reverter, D. and Lima, C. D. (2012) Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2. J. Biol. Chem. 287, 4740-4751
    • (2012) J. Biol. Chem. , vol.287 , pp. 4740-4751
    • Gareau, J.R.1    Reverter, D.2    Lima, C.D.3
  • 44
  • 45
    • 0038579251 scopus 로고    scopus 로고
    • An NMR-based model of the ubiquitin-bound human ubiquitin conjugation complex Mms2-Ubc13: The structural basis for lysine 63 chain catalysis
    • DOI 10.1074/jbc.M212353200
    • McKenna, S., Moraes, T., Pastushok, L., Ptak, C., Xiao, W., Spyracopoulos, L. and Ellison, M. J. (2003) An NMR-based model of the ubiquitin-bound human ubiquitin conjugation complex Mms2-Ubc13. The structural basis for lysine 63 chain catalysis. J. Biol. Chem. 278, 13151-13158 (Pubitemid 36800083)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.15 , pp. 13151-13158
    • McKenna, S.1    Moraes, T.2    Pastushok, L.3    Ptak, C.4    Xiao, W.5    Spyracopoulos, L.6    Ellison, M.J.7
  • 46


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.