-
1
-
-
0020480741
-
An interactive technique for the display of nucleic acid secondary structure
-
Shapiro,B.A., Lipkin,L.E. and Maizel,J. (1982) An interactive technique for the display of nucleic acid secondary structure. Nucleic Acids Res., 10, 7041-7052.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 7041-7052
-
-
Shapiro, B.A.1
Lipkin, L.E.2
Maizel, J.3
-
2
-
-
0002213113
-
Algorithms for loop matchings
-
Nussinov,R., Pieczenik,G., Griggs,J.R. and Kleitman,D.J. (1978) Algorithms for loop matchings. SIAM J. Appl. Math., 35, 68.
-
(1978)
SIAM J. Appl. Math.
, vol.35
, pp. 68
-
-
Nussinov, R.1
Pieczenik, G.2
Griggs, J.R.3
Kleitman, D.J.4
-
3
-
-
0027375727
-
Structural analysis by energy dot plot of a large mRNA
-
DOI 10.1006/jmbi.1993.1504
-
Jacobson,A.B. and Zuker,M. (1993) Structural analysis by energy dot plot of a large mRNA. J. Mol. Biol., 233, 261-269. (Pubitemid 23297595)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.2
, pp. 261-269
-
-
Jacobson, A.B.1
Zuker, M.2
-
4
-
-
0015216137
-
Estimation of secondary structure in ribonucleic acids
-
Tinoco,I., Uhlenbeck,O.C. and Levine,M.D. (1971) Estimation of secondary structure in ribonucleic acids. Nature, 230, 362-367.
-
(1971)
Nature
, vol.230
, pp. 362-367
-
-
Tinoco, I.1
Uhlenbeck, O.C.2
Levine, M.D.3
-
5
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker,I.L., Fontana,W., Stadler,P.F., Bonhoeffer,L.S., Tacker,M. and Schuster,P. (1994) Fast folding and comparison of RNA secondary structures. Monatsh. Chem., 125, 167-188.
-
(1994)
Monatsh. Chem.
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, L.S.4
Tacker, M.5
Schuster, P.6
-
6
-
-
0033563463
-
Automatic detection of conserved base pairing patterns in RNA virus genomes
-
PII S0097848599000133
-
Hofacker,I.L. and Stadler,P.F. (1999) Automatic detection of conserved base pairing patterns in RNA virus genomes. Comput. Chem., 23, 401-414. (Pubitemid 129752346)
-
(1999)
Computers and Chemistry
, vol.23
, Issue.3-4
, pp. 401-414
-
-
Hofacker, I.L.1
Stadler, P.F.2
-
7
-
-
0024386096
-
Tree graphs of RNA secondary structures and their comparisons
-
DOI 10.1016/0010-4809(89)90039-6
-
Le,S.Y., Nussinov,R. and Maizel,J.V. (1989) Tree graphs of RNA secondary structures and their comparisons. Comput. Biomed. Res., 22, 461-473. (Pubitemid 19225256)
-
(1989)
Computers and Biomedical Research
, vol.22
, Issue.5
, pp. 461-473
-
-
Le, S.-Y.1
Nussinov, R.2
Maizel, J.V.3
-
8
-
-
0038606979
-
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design
-
Gan,H.H. (2003) Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design. Nucleic Acids Res., 31, 2926-2943.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2926-2943
-
-
Gan, H.H.1
-
9
-
-
0001899745
-
Probing RNA structure, function, and history by comparative analysis
-
Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), 2nd edn. Cold Spring Habor Press, Cold Spring Harbor, NY
-
Pace,N., Thomas,B. and Woese,C. (1999) Probing RNA structure, function, and history by comparative analysis. In: Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), The RNA World, 2nd edn. Cold Spring Habor Press, Cold Spring Harbor, NY, pp. 113-142.
-
(1999)
The RNA World
, pp. 113-142
-
-
Pace, N.1
Thomas, B.2
Woese, C.3
-
10
-
-
13444309635
-
RALEE-RNA ALignment editor in Emacs
-
Griffiths-Jones,S. (2005) RALEE-RNA ALignment editor in Emacs. Bioinformatics, 21, 257-259.
-
(2005)
Bioinformatics
, vol.21
, pp. 257-259
-
-
Griffiths-Jones, S.1
-
11
-
-
77955475692
-
TRANSAT- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures
-
Wiebe,N.J.P. and Meyer,I.M. (2010) TRANSAT- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures. PLoS Comput. Biol., 6, e1000823.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Wiebe, N.J.P.1
Meyer, I.M.2
-
12
-
-
26644439939
-
jViz.Rna - A java tool for RNA secondary structure visualization
-
DOI 10.1109/TNB.2005.853646
-
Wiese,K., Glen,E. and Vasudevan,A. (2005) jViz. Rna-A Java tool for RNA secondary structure visualization. IEEE Trans. Nanobiosci., 4, 212-218. (Pubitemid 41441410)
-
(2005)
IEEE Transactions on Nanobioscience
, vol.4
, Issue.3
, pp. 212-218
-
-
Wiese, K.C.1
Glen, E.2
Vasudevan, A.3
-
13
-
-
67650727366
-
VARNA: Interactive drawing and editing of the RNA secondary structure
-
Darty,K., Denise,A. and Ponty,Y. (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics, 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
15
-
-
79961135005
-
-
R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team (2011) R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2011)
R: A Language and Environment for Statistical Computing
-
-
-
16
-
-
0031745782
-
Using reliability information to annotate RNA secondary structures
-
DOI 10.1017/S1355838298980116
-
Zuker,M. and Jacobson,A.B. (1998) Using reliability information to annotate RNA secondary structures. RNA, 4, 669-679. (Pubitemid 28252749)
-
(1998)
RNA
, vol.4
, Issue.6
, pp. 669-679
-
-
Zuker, M.1
Jacobson, A.B.2
-
17
-
-
0041813144
-
ColorBrewer.org: An online tool for selecting colour schemes for maps
-
DOI 10.1179/000870403235002042
-
Harrower,M. and Brewer,C.A. (2003) ColorBrewer.org: an online tool for selecting colour schemes for maps. Cartogr. J., 40, 27-37. (Pubitemid 36901477)
-
(2003)
Cartographic Journal
, vol.40
, Issue.1
, pp. 27-37
-
-
Harrower, M.1
Brewer, C.A.2
-
18
-
-
33646272409
-
Identification and classification of conserved RNA secondary structures in the human genome
-
Pedersen,J.S., Bejerano,G., Siepel,A., Rosenbloom,K., Lindblad-Toh,K., Lander,E.S., Kent,J., Miller,W. and Haussler,D. (2006) Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput. Biol., 2, e33.
-
(2006)
PLoS Comput. Biol.
, vol.2
-
-
Pedersen, J.S.1
Bejerano, G.2
Siepel, A.3
Rosenbloom, K.4
Lindblad-Toh, K.5
Lander, E.S.6
Kent, J.7
Miller, W.8
Haussler, D.9
-
19
-
-
39149120310
-
Colorstock, SScolor, Ratón: RNA alignment visualization tools
-
DOI 10.1093/bioinformatics/btm635
-
Bendaña,Y.R. and Holmes,I.H. (2008) Colorstock, SScolor, Ratón: RNA alignment visualization tools. Bioinformatics, 24, 579-580. (Pubitemid 351256304)
-
(2008)
Bioinformatics
, vol.24
, Issue.4
, pp. 579-580
-
-
Bendana, Y.R.1
Holmes, I.H.2
-
20
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones,S. (2003) Rfam: an RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
-
21
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone,J.J., Subramanian,S., Schnare,M.N., Collett,J.R., D'Souza,L.M., Du,Y., Feng,B., Lin,N., Madabusi,L.V., Müller,K.M. et al. (2002) The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinf., 3, 2.
-
(2002)
BMC Bioinf.
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Müller, K.M.10
-
22
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker,I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
23
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
24
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. PNAS, 85, 2444-2448.
-
(1988)
PNAS
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
25
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman,R.C., Carey,V.J., Bates,D.M., Bolstad,B., Dettling,M., Dudoit,S., Ellis,B., Gautier,L., Ge,Y., Gentry,J. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol., 5, R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
|