Multiple genomic sequences of hepatitis delta virus are associated with cdna promoter activity and RNA double rolling-circle replication

Journal of General Virology

Volumn 93, Issue 3, 2012, Pages 577-587

  Liao, Fu Tien ^a   Hsu, Li Sung ^a   Ko, Jiunn Liang ^a   Lin, Chun Che ^a,b   Sheu, Gwo Tarng ^a  

^a CHUNG SHAN MEDICAL UNIVERSITY   (Taiwan)

^b CHUNG SHAN MEDICAL UNIVERSITY HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HEPATITIS DELTA ANTIGEN; RNA; RNA POLYMERASE II;

ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; HEPATITIS DELTA VIRUS; HUMAN; HUMAN CELL; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RNA REPLICATION; RNA SYNTHESIS;

CELL LINE; DNA, COMPLEMENTARY; HEPATITIS DELTA VIRUS; HEPATOCYTES; HUMANS; MUTAGENESIS, SITE-DIRECTED; PROMOTER REGIONS, GENETIC; RNA POLYMERASE II; RNA, VIRAL; VIRUS REPLICATION;

HEPATITIS DELTA VIRUS;

EID: 84863176075     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.037507-0     Document Type: Article

References (45)

1. Abrahem, A. & Pelchat, M. (2008). Formation of an RNA polymerase II preinitiation complex on an RNA promoter derived from the hepatitis delta virus RNA genome. Nucleic Acids Res 36, 5201-5211.
2. Beard, M. R., MacNaughton, T. B. & Gowans, E. J. (1996). Identification and characterization of a hepatitis delta virus RNA transcriptional promoter. J Virol 70, 4986-4995.
3. Chang, F. L., Chen, P. J., Tu, S. J., Wang, C. J. & Chen, D. S. (1991). The large form of hepatitis delta antigen is crucial for assembly of hepatitis delta virus. Proc Natl Acad Sci U S A 88, 8490-8494.
4. Chang, M. F., Sun, C. Y., Chen, C. J. & Chang, S. C. (1993). Functional motifs of delta antigen essential for RNA binding and replication of hepatitis delta virus. J Virol 67, 2529-2536.
5. Chang, J., Nie, X., Chang, H. E., Han, Z. & Taylor, J. (2008). Transcription of hepatitis delta virus RNA by RNA polymerase II. J Virol 82, 1118-1127.
6. Chao, M., Hsieh, S. Y. & Taylor, J. (1990). Role of two forms of hepatitis delta virus antigen: evidence for a mechanism of self-limiting genome replication. J Virol 64, 5066-5069.
7. Chao, Y. C., Tang, H. S. & Hsu, C. T. (1994). Evolution rate of hepatitis delta virus RNA isolated in Taiwan. J Med Virol 43, 397-403.
8. Chen, P. J., Kalpana, G., Goldberg, J., Mason, W., Werner, B., Gerin, J. & Taylor, J. (1986). Structure and replication of the genome of the hepatitis delta virus. Proc Natl Acad Sci U S A 83, 8774-8778.
9. Chen, P. J., Chang, F. L., Wang, C. J., Lin, C. J., Sung, S. Y. & Chen, D. S. (1992). Functional study of hepatitis delta virus large antigen in packaging and replication inhibition: role of the amino-terminal leucine zipper. J Virol 66, 2853-2859.
10. Ferré-D'Amaré, A. R., Zhou, K. & Doudna, J. A. (1998). Crystal structure of a hepatitis delta virus ribozyme. Nature 395, 567-574.
11. Goto, T., Kato, N., Ono-Nita, S. K., Yoshida, H., Otsuka, M., Shiratori, Y. & Omata, M. (2000). Large isoform of hepatitis delta antigen activates serum response factor-associated transcription. J Biol Chem 275, 37311-37316.
12. Greco-Stewart, V. S., Miron, P., Abrahem, A. & Pelchat, M. (2007). The human RNA polymerase II interacts with the terminal stem-loop regions of the hepatitis delta virus RNA genome. Virology 357, 68-78.
13. Greco-Stewart, V. S., Schissel, E. & Pelchat, M. (2009). The hepatitis delta virus RNA genome interacts with the human RNA polymerases I and III. Virology 386, 12-15.
14. Gudima, S., Wu, S. Y., Chiang, C. M., Moraleda, G. & Taylor, J. (2000). Origin of hepatitis delta virus mRNA. J Virol 74, 7204-7210.
15. Huang, Z. S. & Wu, H. N. (1998). Identification and characterization of the RNA chaperone activity of hepatitis delta antigen peptides. J Biol Chem 273, 26455-26461.
16. Hughes, S. A., Wedemeyer, H. & Harrison, P. M. (2011). Hepatitis delta virus. Lancet 378, 73-85.
17. Jayan, G. C. & Casey, J. L. (2002). Inhibition of hepatitis delta virus RNA editing by short inhibitory RNA-mediated knockdown of ADAR1 but not ADAR2 expression. J Virol 76, 12399-12404.
18. Jeng, K. S., Daniel, A. & Lai, M. M. (1996). A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication. J Virol 70, 2403-2410.
19. Krushkal, J. & Li, W. H. (1995). Substitution rates in hepatitis delta virus. J Mol Evol 41, 721-726.
20. Kuo, M. Y., Chao, M. & Taylor, J. (1989). Initiation of replication of the human hepatitis delta virus genome from cloned DNA: role of delta antigen. J Virol 63, 1945-1950.
21. Lai, M. M. (2005). RNA replication without RNA-dependent RNA polymerase: surprises from hepatitis delta virus. J Virol 79, 7951-7958.
22. Lee, C. M., Bih, F. Y., Chao, Y. C., Govindarajan, S. & Lai, M. M. (1992). Evolution of hepatitis delta virus RNA during chronic infection. Virology 188, 265-273.
23. Lee, C. Z., Chen, P. J. & Chen, D. S. (1995). Large hepatitis delta antigen in packaging and replication inhibition: role of the carboxyl-terminal 19 amino acids and amino-terminal sequences. J Virol 69, 5332-5336.
24. Lehmann, E., Brueckner, F. & Cramer, P. (2007). Molecular basis of RNA-dependent RNA polymerase II activity. Nature 450, 445-449.
25. Liao, F. T., Lee, Y. J., Ko, J. L., Tsai, C. C., Tseng, C. J. & Sheu, G. T. (2009). Hepatitis delta virus epigenetically enhances clusterin expression via histone acetylation in human hepatocellular carcinoma cells. J Gen Virol 90, 1124-1134.
26. Lo, K., Sheu, G. T. & Lai, M. M. (1998). Inhibition of Cellular RNA polymerase II transcription by delta antigen of hepatitis delta virus. Virology 247, 178-188.
27. MacNaughton, T. B., Beard, M. R., Chao, M., Gowans, E. J. & Lai, M. M. (1993). Endogenous promoters can direct the transcription of hepatitis delta virus RNA from a recircularized cDNA template. Virology 196, 629-636.
28. Macnaughton, T. B., Shi, S. T., Modahl, L. E. & Lai, M. M. (2002). Rolling circle replication of hepatitis delta virus RNA is carried out by two different cellular RNA polymerases. J Virol 76, 3920-3927.
29. Modahl, L. E. & Lai, M. M. (1998). Transcription of hepatitis delta antigen mRNA continues throughout hepatitis delta virus (HDV) replication: a new model of HDV RNA transcription and replication. J Virol 72, 5449-5456.
30. Modahl, L. E. & Lai, M. M. (2000). The large delta antigen of hepatitis delta virus potently inhibits genomic but not antigenomic RNA synthesis: a mechanism enabling initiation of viral replication. J Virol 74, 7375-7380.
31. Moraleda, G., Dingle, K., Biswas, P., Chang, J., Zuccola, H., Hogle, J. & Taylor, J. (2000). Interactions between hepatitis delta virus proteins. J Virol 74, 5509-5515.
32. Nakabayashi, H., Taketa, K., Miyano, K., Yamane, T. & Sato, J. (1982). Growth of human hepatoma cells lines with differentiated functions in chemically defined medium. Cancer Res 42, 3858-3863.
33. Pascarella, S. & Negro, F. (2011). Hepatitis D virus: an update. Liver Int 31, 7-21.
34. Polson, A. G., Bass, B. L. & Casey, J. L. (1996). RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 380, 454-456.
35. Sato, S., Cornillez-Ty, C. & Lazinski, D. W. (2004). By inhibiting replication, the large hepatitis delta antigen can indirectly regulate amber/W editing and its own expression. J Virol 78, 8120-8134.
36. Sharmeen, L., Kuo, M. Y., Dinter-Gottlieb, G. & Taylor, J. (1988). Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage. J Virol 62, 2674-2679.
37. Sheu, G. T. (2002). Initiation of hepatitis delta virus (HDV) replication: HDV RNA encoding the large delta antigen cannot replicate. J Gen Virol 83, 2507-2513.
38. Sheu, G. T. & Lai, M. M. (2000). Recombinant hepatitis delta antigen from E. coli promotes hepatitis delta virus RNA replication only from the genomic strand but not the antigenomic strand. Virology 278, 578-586.
39. Taylor, J. M. (2006). Hepatitis delta virus. Virology 344, 71-76.
40. Wang, J. G. & Lemon, S. M. (1993). Hepatitis delta virus antigen forms dimers and multimeric complexes in vivo. J Virol 67, 446-454.
41. Wang, H. W., Wu, H. L., Chen, D. S. & Chen, P. J. (1997). Identification of the functional regions required for hepatitis D virus replication and transcription by linker-scanning mutagenesis of viral genome. Virology 239, 119-131.
42. Wei, Y. & Ganem, D. (1998). Activation of heterologous gene expression by the large isoform of hepatitis delta antigen. J Virol 72, 2089-2096.
43. Wong, S. K. & Lazinski, D. W. (2002). Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1. Proc Natl Acad Sci U S A 99, 15118-15123.
44. Xia, Y. P. & Lai, M. M. (1992). Oligomerization of hepatitis delta antigen is required for both the trans-activating and trans-dominant inhibitory activities of the delta antigen. J Virol 66, 6641-6648.
45. Yamaguchi, Y., Filipovska, J., Yano, K., Furuya, A., Inukai, N., Narita, T., Wada, T., Sugimoto, S., Konarska, M. M. & Handa, H. (2001). Stimulation of RNA polymerase II elongation by hepatitis delta antigen. Science 293, 124-127.