Characterization of the complete genome of ribgrass mosaic virus isolated from Plantago major L. from New Zealand and Actinidia spp. from China

Archives of Virology

Volumn 157, Issue 7, 2012, Pages 1253-1260

  Chavan, Ramesh R ^a   Cohen, Daniel ^b   Blouin, Arnaud G ^b   Pearson, Michael N ^a  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA; VIRUS RNA;

ACTINIDIA; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CHINA; CONSENSUS SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR GENETICS; NEW ZEALAND; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; PLANTAGO; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; TOBAMOVIRUS; VIROLOGY; VIRUS GENOME;

ACTINIDIA; AMINO ACID SEQUENCE; BASE SEQUENCE; CHINA; CONSENSUS SEQUENCE; DNA, VIRAL; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; NEW ZEALAND; PHYLOGENY; PLANT DISEASES; PLANTAGO; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ALIGNMENT; TOBAMOVIRUS;

ACTINIDIA; ACTINIDIA CHINENSIS; ACTINIDIA DELICIOSA; BRASSICA RAPA SUBSP. RAPA; PLANTAGO; PLANTAGO MAJOR; RIBGRASS MOSAIC VIRUS; TOBAMOVIRUS; TURNIP VEIN-CLEARING VIRUS; YOUCAI MOSAIC VIRUS;

EID: 84863106440     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1292-0     Document Type: Article

References (25)

1. Adams MJ, Antoniw JF, Kreuze J (2009) Virgaviridae: a new family of rod-shaped plant viruses, virology division news. Arch Virol 154: 1967-1972.
2. Adkins S, Kamenova I, Achor D, Lewandowski DJ (2003) Biological and molecular characterization of a novel tobamovirus with a unique host range. Plant Dis 87: 1190-1196.
3. Aguilar I, Sanchez F, Martin AM, Martinez-Herrera D, Ponz F (1996) Nucleotide sequence of Chinese rape mosaic virus (oilseed rape mosaic virus), a crucifer tobamovirus infectious on Arabidopsis thaliana. Plant Mol Biol 30: 191-197.
4. Altschul Stephen F, Thomas L, Madden Alejandro A, Schäffer Jinghui Z, Zheng Z, Webb M, David JL (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
5. Blouin AG, Greenwood DR, Chavan RR, Pearson MN, Clover GRG, MacDiarmid RM, Cohen D (2010) A generic method to identify plant viruses by high-resolution tandem mass spectrometry of their coat proteins. J Virol Methods 163: 49-56.
6. Cai L, Chen K, Zhang X, Yan L, Hou M, Xu Z (2009) Biological and molecular characterization of a Crucifer tobamovirus infecting Oilseed rape. Biochem Genet 47: 451-461.
7. Chavan RR, Pearson MN, Cohen D (2009) Partial characterization of a novel Tobamovirus infecting Actinidia chinensis and A. deliciosa (Actinidiaceae) from China. Eur J Plant Pathol 124: 247-259.
8. Chenchik A, Zhu YY, Diatchenko L, Li R, Hill J, Siebert PD (1998) Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR. In: Gene cloning and analysis by RT-PCR. Bio Techniques Books, MA, pp 305-319.
9. Cohen D, Chavan RR, Blouin AG, Pearson MP (2011) First report Turnip vein clearing virus and Ribgrass mosaic virus from New Zealand. Australas Plant Dis Notes (in press).
10. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (2005) Virus taxonomy: eighth report of the international committee on taxonomy of viruses. Elsevier Academic Press, San Diego.
11. Gibbs A (1999) Evolution and origins of tobamoviruses. Philos Trans Royal Soc Lond B 354: 593-602.
12. Gibbs AJ, Armstrong JS, Gibbs MJ (2004) A type of nucleotide motif that distinguishes tobamovirus species more efficiently than nucleotide signatures. Arch Virol 149: 1941-1954.
13. Heinze C, Lesemann D-E, Ilmberger N, Willingmann P, Adam G (2006) The phylogenetic structure of the cluster of tobamovirus species serologically related to ribgrass mosaic virus (RMV) and the sequence of streptocarpus flower break virus (SFBV). Arch Virol 151: 763-774.
14. Holmes FO (1941) A distinctive strain of tobacco-mosaic virus from Plantago. Phytopathology 31: 1089-1098.
15. Kuhn JH, Jahrling PB (2010) Clarification and guidance on the proper usage of virus and virus species names. Arch Virol 155: 445-453.
16. Lartey RT, Voss TC, Melcher U (1996) Tobamovirus evolution: gene overlaps, recombination, and taxonomic implications. Mol Biol Evol 13: 1327-1338.
17. Lewandowski DJ (2005) Genus tobamovirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds), Virus taxonomy, classification and nomenclature of viruses, eighth report of the international committee on the taxonomy of viruses. Academic Press, San Diego, pp 1009-1014.
18. Min BE, Chung BN, Kim MJ, Ha JH, Lee BY, Ryu KH (2006) Cactus mild mottle virus is a new cactus-infecting tobamovirus. Arch Virol 151: 13-21.
19. Schäffer AAL, Aravind TL, Madden SS, John LS, Yuri IW, Eugene VK, Altschul SF (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res 29: 2994-3005.
20. Sheng FJ, Lu GC, Li DB (1983) An isolate of Ribgrass mosaic virus infecting Brassica rapa in the suburbia of HangZhou. J Zhejiang Agric Uni 9(1): 39-46.
21. Song YS, Min BE, Hong JS, Rhie MJ, Kim MJ, Ryu KH (2006) Molecular evidence supporting the confirmation of Maracuja mosaic virus as a species of the genus Tobamovirus and production of an infectious cDNA transcript. Arch Virol 151: 2337-2348.
22. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4. 0. Mol Biol Evolution 24: 1596-1599.
23. Wang H, Culver JN, Stubbs G (1997) Structure of Ribgrass mosaic virus at 2. 9Å resolution: evolution and taxonomy of tobamoviruses. J Mol Biol 269: 769-779.
24. Wetzel T, Njapo Ngangom HO, Chotewutmontri S, Krezal G (2006) Nucleotide sequence of a new isolate of Ribgrass mosaic tobamovirus infecting Impatiens New Guienea. Arch Virol 151: 787-791.
25. Zhu H, Hong J, Ye R, Chen J, Yu S, Adams MJ (2001) Sequence analysis shows that Ribgrass mosaic virus Shanghai isolate (RMV-Sh) is closely related to Youcai mosaic virus. Arch Virol 146: 1231-1238.