메뉴 건너뛰기




Volumn 57, Issue 6, 2012, Pages 698-706

A membrane evolutionary algorithm for DNA sequence design in DNA computing

Author keywords

DNA computing; DNA sequence design; membrane computing; P system

Indexed keywords


EID: 84863057813     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-011-4928-7     Document Type: Article
Times cited : (46)

References (40)
  • 2
    • 74049127170 scopus 로고    scopus 로고
    • Spiking neural P systems: An improved normal form
    • Pan L Q, Paun G. Spiking neural P systems: An improved normal form. Theor Comput Sci, 2010, 411: 906-918.
    • (2010) Theor Comput Sci , vol.411 , pp. 906-918
    • Pan, L.Q.1    Paun, G.2
  • 3
    • 78149354843 scopus 로고    scopus 로고
    • Spiking neural P systems with weights
    • Wang J, Hoogeboom H J, Pan L, et al. Spiking neural P systems with weights. Neural Comput, 2010, 22: 2615-2646.
    • (2010) Neural Comput , vol.22 , pp. 2615-2646
    • Wang, J.1    Hoogeboom, H.J.2    Pan, L.3
  • 4
  • 5
    • 1642306974 scopus 로고    scopus 로고
    • Solving a PSPACE-complete problem by Prelognizing systems with restricted active membranes
    • Alhazov A, Martin-Vide C, Pan L Q. Solving a PSPACE-complete problem by Prelognizing systems with restricted active membranes. Fund Inform, 2003, 58: 67-77.
    • (2003) Fund Inform , vol.58 , pp. 67-77
    • Alhazov, A.1    Martin-Vide, C.2    Pan, L.Q.3
  • 6
    • 33646243573 scopus 로고    scopus 로고
    • Further remark on P systems with active membranes and two polarizations
    • Pan L Q, Martin-Vide C. Further remark on P systems with active membranes and two polarizations. J Parallel Distr Com, 2006, 66: 867-872.
    • (2006) J Parallel Distr Com , vol.66 , pp. 867-872
    • Pan, L.Q.1    Martin-Vide, C.2
  • 7
    • 27844440883 scopus 로고    scopus 로고
    • Solving multidimensional 0-1 knapsack problem by P systems with input and active membranes
    • Pan L Q, Martin-Vide C. Solving multidimensional 0-1 knapsack problem by P systems with input and active membranes. J Parallel Distr Com, 2005, 65: 1578-1584.
    • (2005) J Parallel Distr Com , vol.65 , pp. 1578-1584
    • Pan, L.Q.1    Martin-Vide, C.2
  • 8
    • 33745918336 scopus 로고    scopus 로고
    • Solving HPP and SAT by P systems with active membranes and separation rules
    • Pan L Q, Alhazov A. Solving HPP and SAT by P systems with active membranes and separation rules. Acta Inform, 2006, 43: 131-145.
    • (2006) Acta Inform , vol.43 , pp. 131-145
    • Pan, L.Q.1    Alhazov, A.2
  • 9
    • 84929141864 scopus 로고    scopus 로고
    • Computational complexity of tissue-like P systems
    • Pan L Q, Perez-Jimenez M J. Computational complexity of tissue-like P systems. J Complexity, 2010, 26: 296-315.
    • (2010) J Complexity , vol.26 , pp. 296-315
    • Pan, L.Q.1    Perez-Jimenez, M.J.2
  • 10
    • 0028446271 scopus 로고
    • Genetic algorithms: A survey
    • Srinivas M, Patnaik L M. Genetic algorithms: A survey. Computer, 1994, 27: 17-26.
    • (1994) Computer , vol.27 , pp. 17-26
    • Srinivas, M.1    Patnaik, L.M.2
  • 11
    • 0031122888 scopus 로고    scopus 로고
    • Evolutionary computation: Comments on the history and current state
    • Back T, Hammel U, Schwefel H P. Evolutionary computation: Comments on the history and current state. IEEE T Evolut Comput, 1997, 1: 3-17.
    • (1997) IEEE T Evolut Comput , vol.1 , pp. 3-17
    • Back, T.1    Hammel, U.2    Schwefel, H.P.3
  • 12
    • 33745648452 scopus 로고    scopus 로고
    • Further twenty six open problems in membrane computing
    • M. A. Gutierrez-Naranjo, A. Riscos-Nunez, and F. J. Romero-Campero (Eds.), Sevilla: Fenix Editora
    • Paun G H. Further twenty six open problems in membrane computing. In: Gutierrez-Naranjo M A, Riscos-Nunez A, Romero-Campero F J, eds. Proceedings of the 3rd Brainstorming Week on Membrane Computing, 2005 January 31-February 4. Sevilla: Fenix Editora, 2005. 249-262.
    • (2005) Proceedings of the 3rd Brainstorming Week on Membrane Computing, 2005 January 31-February 4 , pp. 249-262
    • Paun, G.H.1
  • 13
    • 58149506974 scopus 로고    scopus 로고
    • Membrane algorithms: Approximate algorithms for NP-complete optimization problems
    • G. Ciobanu, G. Paun, and M. J. Perez-Jimenez (Eds.), Berlin: Springer-Verlag
    • Nishida T Y. Membrane algorithms: Approximate algorithms for NP-complete optimization problems. In: Ciobanu G, Paun G, Perez-Jimenez M J, eds. Applications of Membrane Computing. Berlin: Springer-Verlag, 2006. 303-314.
    • (2006) Applications of Membrane Computing , pp. 303-314
    • Nishida, T.Y.1
  • 14
    • 33745653892 scopus 로고    scopus 로고
    • Membrane algorithms
    • Nishida T Y. Membrane algorithms. LNCS, 2006, 3850: 55-56.
    • (2006) LNCS , vol.3850 , pp. 55-56
    • Nishida, T.Y.1
  • 15
    • 84876512225 scopus 로고    scopus 로고
    • A membrane algorithm for the min storing problem
    • Leporati A, Pagani D. A membrane algorithm for the min storing problem. LNCS, 2006, 4361: 443-462.
    • (2006) LNCS , vol.4361 , pp. 443-462
    • Leporati, A.1    Pagani, D.2
  • 16
    • 58149510448 scopus 로고    scopus 로고
    • A quantum-inspired evolutionary algorithm based on P systems for knapsack problem
    • Zhang G X, Gheorghe M, Wu C Z. A quantum-inspired evolutionary algorithm based on P systems for knapsack problem. Fund Inform, 2008, 87: 93-116.
    • (2008) Fund Inform , vol.87 , pp. 93-116
    • Zhang, G.X.1    Gheorghe, M.2    Wu, C.Z.3
  • 17
    • 77956339335 scopus 로고    scopus 로고
    • Analyzing radar emitter signals with membrane algorithms
    • Zhang G X, Liu C X, Rong H N. Analyzing radar emitter signals with membrane algorithms. Math Comput Model, 2010, 52: 1997-2010.
    • (2010) Math Comput Model , vol.52 , pp. 1997-2010
    • Zhang, G.X.1    Liu, C.X.2    Rong, H.N.3
  • 18
    • 84876582159 scopus 로고    scopus 로고
    • Distributed evolutionary algorithms inspired by membranes in solving continuous optimization problems
    • Zaharie D, Ciobanu G. Distributed evolutionary algorithms inspired by membranes in solving continuous optimization problems. LNCS, 2006, 4361: 536-553.
    • (2006) LNCS , vol.4361 , pp. 536-553
    • Zaharie, D.1    Ciobanu, G.2
  • 19
    • 0028114541 scopus 로고
    • Molecular computation of solutions to combinatorial problems
    • Adleman L M. Molecular computation of solutions to combinatorial problems. Science, 1994, 266: l021-1024.
    • (1994) Science , vol.266
    • Adleman, L.M.1
  • 20
    • 0029278612 scopus 로고
    • DNA solution of hard computational problems
    • Lipton R. DNA solution of hard computational problems. Science, 1995, 268: 542-545.
    • (1995) Science , vol.268 , pp. 542-545
    • Lipton, R.1
  • 21
    • 0037134023 scopus 로고    scopus 로고
    • Solution of a 20-variable 3-SAT problem on a DNA computer
    • Braich R S, Chelyapov N, Johnson C, et al. Solution of a 20-variable 3-SAT problem on a DNA computer. Science, 2002, 296: 499-502.
    • (2002) Science , vol.296 , pp. 499-502
    • Braich, R.S.1    Chelyapov, N.2    Johnson, C.3
  • 22
    • 0037090941 scopus 로고    scopus 로고
    • Efficient DNA sticker algorithms for NP-complete graph problems
    • Zimmermann K. Efficient DNA sticker algorithms for NP-complete graph problems. Comput Phys Commun, 2002, 144: 297-309.
    • (2002) Comput Phys Commun , vol.144 , pp. 297-309
    • Zimmermann, K.1
  • 23
    • 0030725521 scopus 로고    scopus 로고
    • DNA solution of the maximal clique problem
    • Ouyang Q, Kaplan P D, Liu S, et al. DNA solution of the maximal clique problem. Science, 1997, 278: 446-449.
    • (1997) Science , vol.278 , pp. 446-449
    • Ouyang, Q.1    Kaplan, P.D.2    Liu, S.3
  • 24
    • 77953010957 scopus 로고    scopus 로고
    • A DNA length reducing computing model for maximum independent set problem
    • Zhang C, Yang J, Xu J, et al. A DNA length reducing computing model for maximum independent set problem. Chin Sci Bull, 2010, 55: 890-896.
    • (2010) Chin Sci Bull , vol.55 , pp. 890-896
    • Zhang, C.1    Yang, J.2    Xu, J.3
  • 26
    • 33745745746 scopus 로고    scopus 로고
    • Designing nucleotide sequences for computation: A survey of constraints
    • Sager J, Stefanovic D. Designing nucleotide sequences for computation: A survey of constraints. LNCS, 2006, 3892: 275-289.
    • (2006) LNCS , vol.3892 , pp. 275-289
    • Sager, J.1    Stefanovic, D.2
  • 30
    • 24644490467 scopus 로고    scopus 로고
    • Developing support system for sequence design in DNA computing
    • Tanaka F, Nakatsugawa M, Yamamoto M, et al. Developing support system for sequence design in DNA computing. LNCS, 2002, 2340: 129-137.
    • (2002) LNCS , vol.2340 , pp. 129-137
    • Tanaka, F.1    Nakatsugawa, M.2    Yamamoto, M.3
  • 31
    • 34250732792 scopus 로고    scopus 로고
    • A new approach based on PSO algorithm to find good computational encoding sequences
    • Cui G Z, Niu Y Y, Wang Y F, et al. A new approach based on PSO algorithm to find good computational encoding sequences. Prog Nat Sci, 2007, 17: 712-716.
    • (2007) Prog Nat Sci , vol.17 , pp. 712-716
    • Cui, G.Z.1    Niu, Y.Y.2    Wang, Y.F.3
  • 32
    • 34250723813 scopus 로고    scopus 로고
    • The optimization of DNA encodings based on GA/SA algorithm
    • Wang W, Zheng X D, Zhang Q, et al. The optimization of DNA encodings based on GA/SA algorithm. Prog Nat Sci, 2007, 17: 739-744.
    • (2007) Prog Nat Sci , vol.17 , pp. 739-744
    • Wang, W.1    Zheng, X.D.2    Zhang, Q.3
  • 33
    • 49949110986 scopus 로고    scopus 로고
    • Hardware acceleration for thermodynamic constrained DNA code generation
    • Qiu Q R, Mukre P, Bishop M, et al. Hardware acceleration for thermodynamic constrained DNA code generation. LNCS, 2008, 4848: 201-210.
    • (2008) LNCS , vol.4848 , pp. 201-210
    • Qiu, Q.R.1    Mukre, P.2    Bishop, M.3
  • 34
    • 49949119338 scopus 로고    scopus 로고
    • DNA codes based on stem similarities between DNA sequences
    • Dyachkov A G, Macula A, Rykov V, et al. DNA codes based on stem similarities between DNA sequences. LNCS, 2008, 4848: 146-151.
    • (2008) LNCS , vol.4848 , pp. 146-151
    • Dyachkov, A.G.1    Macula, A.2    Rykov, V.3
  • 35
    • 49949096745 scopus 로고    scopus 로고
    • Dynamic neighborhood searches for thermodynamically designing DNA sequence
    • Kawashimo S, Ono H, Sadakane K, et al. Dynamic neighborhood searches for thermodynamically designing DNA sequence. LNCS, 2008, 4848: 130-139.
    • (2008) LNCS , vol.4848 , pp. 130-139
    • Kawashimo, S.1    Ono, H.2    Sadakane, K.3
  • 36
    • 67349117815 scopus 로고    scopus 로고
    • Application of a novel IWO to the design of encoding sequences for DNA computing
    • Zhang X C, Wang Y F, Cui G Z, et al. Application of a novel IWO to the design of encoding sequences for DNA computing. Comput Math Appl, 2009, 57: 2001-2008.
    • (2009) Comput Math Appl , vol.57 , pp. 2001-2008
    • Zhang, X.C.1    Wang, Y.F.2    Cui, G.Z.3
  • 37
    • 0025944267 scopus 로고
    • DNA probes: Applications of the principles of nucleic acid hybridization
    • Wetmur J G. DNA probes: Applications of the principles of nucleic acid hybridization. Crit Rev Biochem Mol, 1991, 26: 227-259.
    • (1991) Crit Rev Biochem Mol , vol.26 , pp. 227-259
    • Wetmur, J.G.1
  • 38
    • 17744396167 scopus 로고    scopus 로고
    • Multi-objective evolutionary optimization of DNA sequences for reliable DNA computing
    • Shin S Y, Lee I H, Kim D, et al. Multi-objective evolutionary optimization of DNA sequences for reliable DNA computing. IEEE T Evolut Comput, 2005, 9: 143-158.
    • (2005) IEEE T Evolut Comput , vol.9 , pp. 143-158
    • Shin, S.Y.1    Lee, I.H.2    Kim, D.3
  • 39
    • 34247207081 scopus 로고    scopus 로고
    • Immune chaotic algorithm for constrained optimization problems (in Chinese)
    • Meng W C, Qiu J J, Zhang Y H. Immune chaotic algorithm for constrained optimization problems (in Chinese). J Zhejiang Univ, 2007, 41: 299-303.
    • (2007) J Zhejiang Univ , vol.41 , pp. 299-303
    • Meng, W.C.1    Qiu, J.J.2    Zhang, Y.H.3
  • 40
    • 67349117783 scopus 로고    scopus 로고
    • A hybrid quantum chaotic swarm evolutionary algorithm for DNA encoding
    • Xiao J H, Xu J, Chen Z H, et al. A hybrid quantum chaotic swarm evolutionary algorithm for DNA encoding. Comput Math Appl, 2009, 57: 1949-1958.
    • (2009) Comput Math Appl , vol.57 , pp. 1949-1958
    • Xiao, J.H.1    Xu, J.2    Chen, Z.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.