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Volumn 9, Issue 2, 2012, Pages 560-570

Parallelized evolutionary learning for detection of biclusters in gene expression data

Author keywords

Biclustering; gene expression data analysis; genetic learning; subdimensional search strategy

Indexed keywords

BICLUSTERING; BICLUSTERING ALGORITHM; BICLUSTERS; BIOLOGICAL PROCESS; CLUSTERING PROBLEMS; COMPUTING TIME; EVOLUTIONARY LEARNING; EXPERIMENTAL CONDITIONS; EXPRESSION PATTERNS; GENE EXPRESSION DATA; GENE EXPRESSION DATA ANALYSIS; GENETIC LEARNING; MERGING PROCEDURE; MICROARRAY DATA SETS; MICROARRAY EXPERIMENTS; SEARCH SPACES; SEARCH STRATEGIES;

EID: 84863038127     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2011.53     Document Type: Article
Times cited : (62)

References (36)
  • 3
    • 0035024021 scopus 로고    scopus 로고
    • Validating clustering for gene expression data
    • K.Y. Yeung, D.R. Haynor, and W.L. Ruzzo, "Validating Clustering for Gene Expression Data," Bioinformatics, vol. 17, pp. 309-318, 2001. (Pubitemid 32421924)
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 309-318
    • Yeung, K.Y.1    Haynor, D.R.2    Ruzzo, W.L.3
  • 7
    • 84927511887 scopus 로고
    • Direct clustering of a data matrix
    • J.A. Hartigan, "Direct Clustering of a Data Matrix," J. Am. Statistical Assoc., vol. 67, pp. 123-129, 1972.
    • (1972) J. Am. Statistical Assoc. , vol.67 , pp. 123-129
    • Hartigan, J.A.1
  • 9
    • 0035237805 scopus 로고    scopus 로고
    • Rich probabilistic models for gene expression
    • E. Segal, B. Taskar, A. Gasch, N. Friedman, and D. Koller, "Rich Probabilistic Models for Gene Expression," Bioinformatics, vol. 17, pp. S243-S252, 2001. (Pubitemid 33793516)
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Segal, E.1    Taskar, B.2    Gasch, A.3    Friedman, N.4    Koller, D.5
  • 10
    • 0041627879 scopus 로고    scopus 로고
    • Extracting conserved gene expression motifs from gene expression data
    • T.M. Murali and S. Kasif, "Extracting Conserved Gene Expression Motifs from Gene Expression Data," Proc. Pacific Symp. Biocomputing, pp. 77-88, 2003.
    • (2003) Proc. Pacific Symp. Biocomputing , pp. 77-88
    • Murali, T.M.1    Kasif, S.2
  • 11
    • 0036699526 scopus 로고    scopus 로고
    • Revealing modular organization in the yeast transcriptional network
    • DOI 10.1038/ng941
    • J. Ihmels, G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai, "Revealing Modular Organization in the Yeast Transcriptional Network," Nature Genetics, vol. 31, pp. 370-377, 2002. (Pubitemid 35154445)
    • (2002) Nature Genetics , vol.31 , Issue.4 , pp. 370-377
    • Ihmels, J.1    Friedlander, G.2    Bergmann, S.3    Sarig, O.4    Ziv, Y.5    Barkai, N.6
  • 12
    • 4544339167 scopus 로고    scopus 로고
    • Defining transcription modules using large-scale gene expression data
    • DOI 10.1093/bioinformatics/bth166
    • J. Ihmels, S. Bergmann, and N. Barkai, "Defining Transcription Modules Using Large-Scale Gene Expression Data," Bioinformatics, vol. 20, pp. 1993-2003, 2004. (Pubitemid 39236551)
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 1993-2003
    • Ihmels, J.1    Bergmann, S.2    Barkai, N.3
  • 15
    • 33746098520 scopus 로고    scopus 로고
    • Application of simulated annealing to the biclustering of gene expression data
    • DOI 10.1109/TITB.2006.872073
    • K. Bryan, P. Cunningham, and N. Bolshakova, "Application of Simulated Annealing to the Biclustering of Gene Expression Data," IEEE Trans. Information Technology in Biomedicine, vol. 10, no. 3, pp. 519-525, July 2006. (Pubitemid 44194083)
    • (2006) IEEE Transactions on Information Technology in Biomedicine , vol.10 , Issue.3 , pp. 519-525
    • Bryan, K.1    Cunningham, P.2    Bolshakova, N.3
  • 17
    • 0034710876 scopus 로고    scopus 로고
    • Coupled two-way clustering analysis of gene microarray data
    • G. Getz, E. Levine, and E. Domany, "Coupled Two-Way Clustering Analysis of Gene Microarray Data," Proc. Nat'l Academy of Sciences USA, vol. 97, pp. 12079-12084, 2000.
    • (2000) Proc. Nat'l Academy of Sciences USA , vol.97 , pp. 12079-12084
    • Getz, G.1    Levine, E.2    Domany, E.3
  • 20
    • 33845864692 scopus 로고    scopus 로고
    • Computing the maximum similarity bi-clusters of gene expression data
    • DOI 10.1093/bioinformatics/btl560
    • X. Liu and L. Wang, "Computing the Maximum Similarity Bi-Clusters of Gene Expression Data," Bioinformatics, vol. 23, pp. 50-56, 2007. (Pubitemid 46017855)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 50-56
    • Liu, X.1    Wang, L.2
  • 21
    • 0037399130 scopus 로고    scopus 로고
    • Spectral biclustering of microarray data: Coclustering genes and conditions
    • DOI 10.1101/gr.648603
    • Y. Kluger, R. Basri, J.T. Chang, and M. Gerstein, "Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions," Genome Research, vol. 13, pp. 703-716, 2003. (Pubitemid 36511928)
    • (2003) Genome Research , vol.13 , Issue.4 , pp. 703-716
    • Kluger, Y.1    Basri, R.2    Chang, J.T.3    Gerstein, M.4
  • 22
    • 29844442223 scopus 로고    scopus 로고
    • TRICLUSTER: An effective algorithm for mining coherent clusters in 3D microarray data
    • SIGMOD 2005: Proceedings of the ACM SIGMOD International Conference on Management of Data
    • L. Zhao and M.J. Zaki, "Tricluster: An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data," Proc. ACM SIGMOD Int'l Conf. Management of Data, pp. 694-705, 2005. (Pubitemid 43038968)
    • (2005) Proceedings of the ACM SIGMOD International Conference on Management of Data , pp. 694-705
    • Zhao, L.1    Zaki, M.J.2
  • 23
    • 33749620002 scopus 로고    scopus 로고
    • Mining shifting-and-scaling Co-regulation patterns on gene expression profiles
    • DOI 10.1109/ICDE.2006.98, 1617457, Proceedings of the 22nd International Conference on Data Engineering, ICDE '06
    • X. Xu, Y. Lu, A.K.H. Tung, and W. Wang, "Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles," Proc. 22th Int'l Conf. Data Eng., p. 89, 2006. (Pubitemid 44539881)
    • (2006) Proceedings - International Conference on Data Engineering , vol.2006 , pp. 89
    • Xu, X.1    Lu, Y.2    Tung, A.K.H.3    Wang, W.4
  • 25
    • 11244306358 scopus 로고    scopus 로고
    • Discovering statistically significant biclusters in gene expression data
    • A. Tanay, R. Sharan, and R. Shamir, "Discovering Statistically Significant Biclusters in Gene Expression Data," Bioinformatics, vol. 18, pp. S136-S144, 2002. (Pubitemid 41185647)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Tanay, A.1    Sharan, R.2    Shamir, R.3
  • 26
    • 34250159488 scopus 로고    scopus 로고
    • Algorithmic and complexity issues of three clustering methods in microarray data analysis
    • DOI 10.1007/s00453-007-0040-4
    • J.S. Tan, K.S. Chua, and L.X. Zhang, and S. Zhu, "Algorithmic and Complexity Issues of the Three Clustering Methods in Microarray Data Analysis," Algorithmica, vol. 48, no. 2, pp. 203-219, 2007. (Pubitemid 46904449)
    • (2007) Algorithmica (New York) , vol.48 , Issue.2 , pp. 203-219
    • Tan, J.1    Chua, K.S.2    Zhang, L.3    Zhu, S.4
  • 27
    • 44849137201 scopus 로고    scopus 로고
    • An impatient evolutionary algorithm with probabilistic tabu search for unified solution of some NP-hard problems in graph and set theory via clique finding
    • DOI 10.1109/TSMCB.2008.915645
    • P. Guturu and R. Dantu, "An Impatient Evolutionary Algorithm with Probabilistic Tabu Search for Unified Solution of Some NPHard Problems in Graph and Set Theory via Clique Finding," IEEE Trans. Systems, Man, Cybernetics, Part B: Cybernetics, vol. 38, no. 3, pp. 645-666, June 2008. (Pubitemid 351796146)
    • (2008) IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics , vol.38 , Issue.3 , pp. 645-666
    • Guturu, P.1    Dantu, R.2
  • 28
    • 27944510324 scopus 로고    scopus 로고
    • Evolutionary computation: A gentle introduction
    • R. Sarker M. Mohammadian, and X. Yao, eds., chapter 2, Kluwer Academic Publishers
    • X. Yao, "Evolutionary Computation: A Gentle Introduction," Evolutionary Optimization, R. Sarker, M. Mohammadian, and X. Yao, eds., chapter 2, pp. 27-53, Kluwer Academic Publishers, 2002.
    • (2002) Evolutionary Optimization , pp. 27-53
    • Yao, X.1
  • 30
    • 33748417841 scopus 로고    scopus 로고
    • Multi-objective evolutionary biclustering of gene expression data
    • DOI 10.1016/j.patcog.2006.03.003, PII S0031320306000872, Bioinformatics
    • S. Mitra and H. Banka, "Multi-Objective Evolutionary Biclustering of Gene Expression Data," Pattern Recognition, vol. 39, pp. 2464-2477, 2006. (Pubitemid 44344744)
    • (2006) Pattern Recognition , vol.39 , Issue.12 , pp. 2464-2477
    • Mitra, S.1    Banka, H.2
  • 31
    • 33645659540 scopus 로고    scopus 로고
    • Biclustering of expression data with evolutionary computation
    • May
    • F. Divina and J.S. Aguilar-Ruiz, "Biclustering of Expression Data with Evolutionary Computation," IEEE Trans. Knowledge and Data Eng., vol. 18, no. 5, pp. 590-602, May 2006.
    • (2006) IEEE Trans. Knowledge and Data Eng. , vol.18 , Issue.5 , pp. 590-602
    • Divina, F.1    Aguilar-Ruiz, J.S.2
  • 32
    • 33744481539 scopus 로고    scopus 로고
    • Parallel identification of gene biclusters with coherent evolutions
    • DOI 10.1109/TSP.2006.873720
    • A.H. Tewfik, A.B. Tchagang, and L. Vertatschitsch, "Parallel Identification of Gene Biclusters with Coherent Evolutions," IEEE Trans. Signal Processing, vol. 54, no. 6, pp. 2408-2417, June 2006. (Pubitemid 43805583)
    • (2006) IEEE Transactions on Signal Processing , vol.54 , Issue.6 , pp. 2408-2417
    • Tewfik, A.H.1    Tchagang, A.B.2    Vertatschitsch, L.3
  • 35
    • 0347513219 scopus 로고    scopus 로고
    • Characterizing gene sets with FuncAssociate
    • DOI 10.1093/bioinformatics/btg363
    • G.F. Berriz, O.D. King, B. Bryant, C. Sander, and F.P. Roth, "Characterizing Gene Sets with FuncAssociate," Bioinformatics, vol. 19, pp. 2502-2504, 2003. (Pubitemid 38016661)
    • (2003) Bioinformatics , vol.19 , Issue.18 , pp. 2502-2504
    • Berriz, G.F.1    King, O.D.2    Bryant, B.3    Sander, C.4    Roth, F.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.