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Volumn 7, Issue 1, 2012, Pages 55-62

Local chromatin dynamics of transcription factors imply cell-lineage specific functions during cellular differentiation

Author keywords

Chromatin state dynamics; Differentiation; Histone modification; Transcription factors

Indexed keywords

HISTONE; TRANSCRIPTION FACTOR;

EID: 84863011941     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.7.1.18683     Document Type: Article
Times cited : (5)

References (22)
  • 1
    • 39349096526 scopus 로고    scopus 로고
    • Hematopoiesis: An evolving paradigm for stem cell biology
    • PMID:18295580
    • Orkin SH, Zon LI. Hematopoiesis: an evolving paradigm for stem cell biology. Cell 2008. 132:631-44. PMID:18295580. http://dx.doi.org/10.1016/j.cell.2008.01.025.
    • (2008) Cell , vol.132 , pp. 631-644
    • Orkin, S.H.1    Zon, L.I.2
  • 2
    • 0034303586 scopus 로고    scopus 로고
    • Diversification of haematopoietic stem cells to specific lineages
    • PMID:11262875
    • Orkin SH. Diversification of haematopoietic stem cells to specific lineages. Nat Rev Genet 2000. 1:57-64. PMID:11262875. http://dx.doi.org/10.1038/35049577.
    • (2000) Nat Rev Genet , vol.1 , pp. 57-64
    • Orkin, S.H.1
  • 3
    • 0028925734 scopus 로고
    • Transcription factors and hematopoietic development
    • PMID:7890597
    • Orkin SH. Transcription factors and hematopoietic development. J Biol Chem 1995. 270:4955-8. PMID:7890597.
    • (1995) J Biol Chem , vol.270 , pp. 4955-4958
    • Orkin, S.H.1
  • 4
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: Function, expression and evolution
    • PMID:19274049
    • Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009. 10:252-63. PMID:19274049. http://dx.doi.org/10.1038/nrg2538.
    • (2009) Nat Rev Genet , vol.10 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3    Luscombe, N.M.4
  • 5
    • 0034667672 scopus 로고    scopus 로고
    • PU.1 inhibits GATA-1 function and erythroid differentiation by blocking GATA-1 DNA binding
    • PMID:11023493
    • Zhang P, Zhang X, Iwama A, Yu C, Smith KA, Mueller BU, et al. PU.1 inhibits GATA-1 function and erythroid differentiation by blocking GATA-1 DNA binding. Blood 2000. 96:2641-8. PMID:11023493.
    • (2000) Blood , vol.96 , pp. 2641-2648
    • Zhang, P.1    Zhang, X.2    Iwama, A.3    Yu, C.4    Smith, K.A.5    Mueller, B.U.6
  • 6
    • 77957348625 scopus 로고    scopus 로고
    • Combinatorial transcriptional control in blood stem/progenitor cells: Genome-wide analysis of ten major transcriptional regulators
    • PMID:20887958
    • Wilson NK, Foster SD, Wang X, Knezevic K, Schutte J, Kaimakis P, et al. Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell 2010. 7:532-44. PMID:20887958. http://dx.doi.org/10.1016/j.stem.2010.07.016.
    • (2010) Cell Stem Cell , vol.7 , pp. 532-544
    • Wilson, N.K.1    Foster, S.D.2    Wang, X.3    Knezevic, K.4    Schutte, J.5    Kaimakis, P.6
  • 7
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • PMID:17512414
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, et al. High-resolution profiling of histone methylations in the human genome. Cell 2007. 129:823-37. PMID:17512414. http://dx.doi.org/10.1016/j.cell.2007.05.009.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6
  • 8
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • PMID:18552846
    • Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, et al. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 2008. 40:897-903. PMID:18552846. http://dx.doi.org/10.1038/ng.154.
    • (2008) Nat Genet , vol.40 , pp. 897-903
    • Wang, Z.1    Zang, C.2    Rosenfeld, J.A.3    Schones, D.E.4    Barski, A.5    Cuddapah, S.6
  • 9
    • 34250307630 scopus 로고    scopus 로고
    • The landscape of histone modifications across 1% of the human genome in five human cell lines
    • PMID:17567990
    • Koch CM, Andrews RM, Flicek P, Dillon SC, Karaoz U, Clelland GK, et al. The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res 2007. 17:691-707. PMID:17567990. http://dx.doi.org/10.1101/gr.5704207.
    • (2007) Genome Res , vol.17 , pp. 691-707
    • Koch, C.M.1    Andrews, R.M.2    Flicek, P.3    Dillon, S.C.4    Karaoz, U.5    Clelland, G.K.6
  • 10
    • 57449095143 scopus 로고    scopus 로고
    • Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq
    • PMID:19014516
    • Zhang Y, Shin H, Song JS, Lei Y, Liu XS. Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics 2008. 9:537. PMID:19014516. http://dx.doi.org/10.1186/1471-2164-9-537.
    • (2008) BMC Genomics , vol.9 , pp. 537
    • Zhang, Y.1    Shin, H.2    Song, J.S.3    Lei, Y.4    Liu, X.S.5
  • 11
    • 48949099045 scopus 로고    scopus 로고
    • Inferring causal relationships among different histone modifications and gene expression
    • PMID:18562678
    • Yu H, Zhu S, Zhou B, Xue H, Han JD. Inferring causal relationships among different histone modifications and gene expression. Genome Res 2008. 18:1314-24. PMID:18562678. http://dx.doi.org/10.1101/gr.073080.107.
    • (2008) Genome Res , vol.18 , pp. 1314-1324
    • Yu, H.1    Zhu, S.2    Zhou, B.3    Xue, H.4    Han, J.D.5
  • 12
    • 53749092745 scopus 로고    scopus 로고
    • An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data
    • PMID:18667444
    • Xu H, Wei CL, Lin F, Sung WK. An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data. Bioinformatics 2008. 24:2344-9. PMID:18667444. http://dx.doi.org/10.1093/bioinformatics/btn402.
    • (2008) Bioinformatics , vol.24 , pp. 2344-2349
    • Xu, H.1    Wei, C.L.2    Lin, F.3    Sung, W.K.4
  • 13
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • PMID:20208536
    • He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, et al. Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010. 42:343-7. PMID:20208536. http://dx.doi.org/10.1038/ng.545.
    • (2010) Nat Genet , vol.42 , pp. 343-347
    • He, H.H.1    Meyer, C.A.2    Shin, H.3    Bailey, S.T.4    Wei, G.5    Wang, Q.6
  • 15
    • 77649246145 scopus 로고    scopus 로고
    • Histone modification levels are predictive for gene expression
    • PMID:20133639
    • Karlić R, Chung HR, Lasserre J, Vlahovicek K, Vingron M. Histone modification levels are predictive for gene expression. Proc Natl Acad Sci USA 2010. 107:2926-31. PMID:20133639. http://dx.doi.org/10.1073/pnas.0909344107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 2926-2931
    • Karlić, R.1    Chung, H.R.2    Lasserre, J.3    Vlahovicek, K.4    Vingron, M.5
  • 16
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • PMID:16630819
    • Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006. 125:315-26. PMID:16630819. http://dx.doi.org/10.1016/j.cell.2006.02.041.
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.3    Kamal, M.4    Huebert, D.J.5    Cuff, J.6
  • 17
    • 34547635995 scopus 로고    scopus 로고
    • Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis
    • PMID:17640913
    • Attema JL, Papathanasiou P, Forsberg EC, Xu J, Smale ST, Weissman IL. Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis. Proc Natl Acad Sci USA 2007. 104:12371-6. PMID:17640913. http://dx.doi. org/10.1073/pnas.0704468104.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12371-12376
    • Attema, J.L.1    Papathanasiou, P.2    Forsberg, E.C.3    Xu, J.4    Smale, S.T.5    Weissman, I.L.6
  • 18
    • 77953809032 scopus 로고    scopus 로고
    • Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
    • PMID:20452322
    • Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 2010. 6:479-91. PMID:20452322. http://dx.doi.org/10.1016/j.stem.2010.03.018.
    • (2010) Cell Stem Cell , vol.6 , pp. 479-491
    • Hawkins, R.D.1    Hon, G.C.2    Lee, L.K.3    Ngo, Q.4    Lister, R.5    Pelizzola, M.6
  • 19
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
    • PMID:19128795
    • Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, et al. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 2009. 4:80-93. PMID:19128795. http://dx.doi.org/10.1016/j.stem.2008.11.011.
    • (2009) Cell Stem Cell , vol.4 , pp. 80-93
    • Cui, K.1    Zang, C.2    Roh, T.Y.3    Schones, D.E.4    Childs, R.W.5    Peng, W.6
  • 20
    • 36549061004 scopus 로고    scopus 로고
    • RNA polymerase is poised for activation across the genome
    • PMID:17994021
    • Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, Grissom SF, et al. RNA polymerase is poised for activation across the genome. Nat Genet 2007. 39:1507-11. PMID:17994021. http://dx.doi.org/10.1038/ng.2007.21.
    • (2007) Nat Genet , vol.39 , pp. 1507-1511
    • Muse, G.W.1    Gilchrist, D.A.2    Nechaev, S.3    Shah, R.4    Parker, J.S.5    Grissom, S.F.6
  • 21
    • 80053217575 scopus 로고    scopus 로고
    • ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
    • PMID:21652639
    • Young MD, Willson TA, Wakefield MJ, Trounson E, Hilton DJ, Blewitt ME, et al. ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res 2011. 39:7415-27. PMID:21652639. http://dx.doi.org/10.1093/nar/gkr416.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7415-7427
    • Young, M.D.1    Willson, T.A.2    Wakefield, M.J.3    Trounson, E.4    Hilton, D.J.5    Blewitt, M.E.6
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • PMID:19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009. 10:25. PMID:19261174. http://dx.doi.org/10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.