Fine mapping of the yellow seed locus in Brassica juncea L.

Genome

Volumn 55, Issue 1, 2012, Pages 8-14

  Huang, Zhen ^a   Ban, Yuanyuan ^a   Yang, Li ^a   Zhang, Yu ^a   Li, Huiqiang ^a   Xiao, Enshi ^a   Xu, Aixia ^a   Zhang, Denghui ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Brassica juncea; Fine mapping; Marker assisted selection; Yellow seed locus

Indexed keywords

PLANT DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARABIDOPSIS; ARTICLE; BRASSICA; CHEMISTRY; CHROMOSOME MAP; GENETIC LINKAGE; GENETIC MARKER; GENETICS; METHODOLOGY; PLANT GENE; SINAPIS;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ARABIDOPSIS; BRASSICA; CHROMOSOME MAPPING; DNA, PLANT; GENES, PLANT; GENETIC LINKAGE; GENETIC MARKERS; SINAPIS;

ARABIDOPSIS; BRASSICA JUNCEA; BRASSICA NAPUS; SINAPIS ALBA;

EID: 84862948081     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g11-072     Document Type: Article

References (33)

1. Babula D. Kaczmarek M. Barakat A. Delseny M. Quiros C.F. Sadowski J. 2003. Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map. Mol. Genet. Genomics, 268 (5): 656-665. 10.1007/s00438-002-0782-2 12589440 (Pubitemid 36286509)
2. Basunanda P. Radoev M. Ecke W. Friedt W. Becker H.C. Snowdon R.J. 2010. Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor. Appl. Genet. 120 (2): 271-281. 10.1007/s00122-009-1133-z 19707740
3. Chai Y.-R. Lei B. Huang H.-L. Li J.-N. Yin J.-M. Tang Z.-L. et al. 2009. TRANSPARENT TESTA 12 genes from Brassica napus and parental species: cloning, evolution, and differential involvement in yellow seed trait. Mol. Genet. Genomics, 281 (1): 109-123. 10.1007/s00438-008-0399-1 19018571
4. Cho Y.G. Blair W.M. Panaud O. McCouch S.R. 1996. Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels. Genome, 39 (2): 373-378. 10.1139/g96-048 8984005 (Pubitemid 126529670)
5. Doyle J.J. Doyle J.L. 1990. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
6. Dun X. Zhou Z. Xia S. Wen J. Yi B. et al. 2011. BnaC.Tic40, a plastid inner membrane translocon originating from Brassica oleracea, is essential for tapetal function andmicrospore development in Brassica napus. Plant J. 68 (3): 532-545. 10.1111/j.1365-313X.2011.04708.x
7. He J. Ke L. Hong D. Xie Y. Wang G. Liu P. Yang G. 2008. Fine mapping of a recessive genic male sterility gene (Bnms3) in rapeseed (Brassica napus) with AFLP-and Arabidopsis-derived PCR markers. Theor. Appl. Genet. 117 (1): 11-18. 10.1007/s00122-008-0747-x 18369585
8. Huang J.-Y. Xu A.-X. Ma C.-Z. Wang S.-Z. 1999. Study on the yellow mustard and the ecologic feature of its distribution zone in North Shaanxi. Acta. Univ. Agric. 27 (6): 33-37. [In Chinese.]
9. Huang Z. Chen Y. Yi B. Xiao L. Ma C. Tu J. Fu T. 2007. Fine mapping of the recessive genic male sterility gene (BnMs3) in Brassica napus L. Theor. Appl. Genet. 115 (1): 113-118. 10.1007/s00122-007-0547-8 17479242 (Pubitemid 46980431)
10. Kosambi D.D. 1943. The estimation of map distances from recombination values. Ann. Eugen. 12 (1): 172-175. 10.1111/j.1469-1809.1943.tb02321.x
11. Lander E.S. Green P. Abrahamson J. Barlow A. Daly M.J. Lincoln S.E. Newberg L. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1 (2): 174-181. 10.1016/0888-7543(87)90010-3 3692487
12. Lincoln, S., Daly, M., and Lander, E. 1992. Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead institute technical report, 3rd ed. Whitehead Technical Institute, Cambridge, Mass.
13. Lionneton E. Aubert G. Ochatt S. Merah O. 2004. Genetic analysis of agronomic and quality traits in mustard (Brassica juncea). Theor. Appl. Genet. 109 (4): 792-799. 10.1007/s00122-004-1682-0 15340689 (Pubitemid 39211088)
14. Liu, H.L., Han, J.X., and Hu, X.J. 1991. Studies on the inheritance of seed coat colour and other related characteristics of yellow seeded Brassica napus. In Proceedings of the 8th International Rapeseed Congress, Vol. 5, Saskatoon, Saskatchewan, 9-11 July 1991. pp. 1438-1444.
15. Liu Z.-W. Fu T.-D. Wang Y. Tu J.-X. Chen B.-Y. 2005. Inheritance of seed colour and identification of RAPD and AFLP markers linked to the seed colour gene in rapeseed (Brassica napus L.). Theor. Appl. Genet. 110 (2): 303-310. 10.1007/s00122-004-1835-1 15565377 (Pubitemid 40181228)
16. Lowe A.J. Jones A.E. Raybould A.F. Trick M. Moule C.J. Edwards K.J. 2002. Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle. Mol. Ecol. Notes, 2 (1): 7-11. 10.1046/j.1471-8286.2002.00126.x (Pubitemid 34287095)
17. Lowe A.J. Moule C. Trick M. Edwards K.J. 2004. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor. Appl. Genet. 108 (6): 1103-1112. 10.1007/s00122-003-1522-7 15067397 (Pubitemid 38549882)
18. Lu G.-Y. Yang G.-S. Fu T.-D. 2001. Silver stained AFLP-a novel assay for DNA fingerprinting in Brassica napus. J. Huazhong. Agric. Univ. 20: 413-415. [In Chinese.]
19. Mienie C.M. Liebenberg M.M. Pretorius Z.A. Miklas P.N. 2005. SCAR markers linked to the common bean rust resistance gene Ur-13. Theor. Appl. Genet. 111 (5): 972-979. 10.1007/s00122-005-0037-9 16059731 (Pubitemid 41473394)
20. Negi M.S. Devic M. Delseny M. Lakshmikumaran M. 2000. Identification of AFLP fragments linked to seed coat colour in Brassica juncea and conversion to a SCAR marker for rapid selection. Theor. Appl. Genet. 101 (1-2): 146-152. 10.1007/s001220051463 (Pubitemid 30483611)
21. Padmaja K.L. Arumugam N. Gupta V. Mukhopadhyay A. Sodhi Y.S. et al. 2005. Mapping and tagging of seed coat colour and the identification of microsatellite markers for marker-assisted manipulation of the trait in Brassica juncea. Theor. Appl. Genet. 111 (1): 8-14. 10.1007/s00122-005-1933-8 15902399 (Pubitemid 40912322)
22. Parkin I.A.P. Gulden S.M. Sharpe A.G. Lukens L. Trick M. Osborn T.C. Lydiate D.J. 2005. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics, 171 (2): 765-781. 10.1534/genetics.105.042093 16020789 (Pubitemid 43158406)
23. Piquemal J. Cinquin E. Couton F. Rondeau C. Seignoret E. doucet I. et al. 2005. Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor. Appl. Genet. 111 (8): 1514-1523. 10.1007/s00122-005-0080-6 16187118 (Pubitemid 41618652)
24. Stringam G.R. 1980. Inheritance of seed color in turnip rape. Can. J. Plant Sci. 60 (2): 331-335. 10.4141/cjps80-054
25. Tyagi M.K. Chauhan J.S. Kumar P.R. 2000. Inheritance of seed coat colour in Indian mustard (Brassica juncea). Indian J. Agric. Sci. 70: 784-785.
26. Vos P. Hogers R. Bleeker M. Reijians M. van deLee T. et al. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23 (21): 4407-4414. 10.1093/nar/23.21.4407 7501463
27. Wang Y.G. 2006. Edible vegetable oil consumption growth in China and its influencing factors. J. Agro. Eco, 6: 54-59. [In Chinese.]
28. Wei Y.-L. Li J.-N. Lu J. Tang Z.-L. Pu D.-C. Chai Y.-R. 2007. Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis. Mol. Biol. Rep. 34 (2): 105-120. 10.1007/s11033-006-9024-8 17115250 (Pubitemid 46675275)
29. Xiao S. Xu J. Li Y. Zhang L. Shi S. Shi S. et al. 2007. Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique. Genome, 50 (7): 611-618. 10.1139/G07-044 17893738 (Pubitemid 47522021)
30. Xu A. Huang Z. Ma C. Xiao E. Tian G. Zhang X. et al. 2010. Inheritance of seed colour and molecular markers linked to the seed color gene in Brassica juncea. Mol. Breed. 25 (1): 57-65. 10.1007/s11032-009-9308-5
31. Yi B. Zeng F. Lei S. Chen Y.L. Yao X. Zhu Y. et al. 2010. Two duplicate CYP704B1-homologous genes BnMs1 and BnMs2 are required for pollen exine formation and tapetal development in Brassica napus. Plant J. 63 (6): 925-938. 10.1111/j.1365-313X.2010.04289.x 20598092
32. Zhang J. Lu Y. Yuan Y. Zhang X. Geng J. Chen Y. et al. 2009. Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa. Plant Mol. Biol. 69 (5): 553-563. 10.1007/s11103-008- 9437-y 19039665
33. Zhou, Y.M., and Fu, T.D. 2007. Genetic improvement of rapeseed in China. In Proceedings of the 12th International Rapeseed Congress, Wuhan, China, 26-30 March 2007. pp. 210-212.