miRNA expression profiling using illumina universal BeadChips

Methods in Molecular Biology

Volumn 822, Issue , 2012, Pages 103-116

  Chen, Jing ^a   April, Craig S ^a   Fan, Jian Bing ^a  

^a ILLUMINA INC   (United States)

Author keywords

BeadArray; DASL assay; Gene expression analysis; Microarray; miRNA

Indexed keywords

MICRORNA;

ANIMAL; ARTICLE; DNA MICROARRAY; DNA PROBE; GENE EXPRESSION PROFILING; HUMAN; INSTRUMENTATION; ISOLATION AND PURIFICATION; METHODOLOGY;

ANIMALS; DNA PROBES; GENE EXPRESSION PROFILING; HUMANS; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 84862946453     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-427-8_7     Document Type: Article

References (22)

1. Chen, J., Lozach, J., Garcia, E. W., Barnes, B., Luo, S., Mikoulitch, I., et al (2008) Highly sensitive and specifi c microRNA expression profi ling using BeadArray technology. Nucleic Acids Res 36, e87.
2. Fan, J. B., Yeakley, J. M., Bibikova, M., Chudin, E., Wickham, E., Chen, J., et al. (2004) A versatile assay for high-throughput gene expression profi ling on universal array matrices Genome Res 14, 878-85
3. Barker, D. L., Theriault, G., Che, D., Dickinson, T., Shen, R., and Kain, R. (2003) Self-assembled random arrays: High-performance imaging and genomics applications on a high-density microarray platform. Proc SPIE 4966, 1-11.
4. Berezikov, E., Thuemmler, F., van Laake, L. W., Kondova, I., Bontrop, R., Cuppen, E. and Plasterk, R.H. (2006) Diversity of microRNAs in human and chimpanzee brain. Nat Genet 38, 1375-7.
5. Berezikov, E., van Tetering, G., Verheul, M., van de Belt, J.,van Laake, L., Vos, J., et al (2006) Many novel mammalian microRNA candidates identifi ed by extensive cloning and RAKE analysis. Genome Res 16, 1289-98.
6. Laurent, L. C., Chen, J., Ulitsky, I., Mueller, F. J., Lu, C., Shamir, R., et al (2008) Comprehensive microRNA profi ling reveals a unique human embryonic stem cell signature dominated by a single seed sequence. Stem Cells 26, 1506-16.
7. Siegrist, F., Singer, T. and Certa, U. (2009) MicroRNA Expression Profi ling by Bead Array Technology in Human Tumor Cell Lines Treated with Interferon-Alpha-2a. Biol Proced 11, 113-29.
8. Pallasch, C., P., Patz, M., Park, Y. J., Hagist, S., Eggle, D., Claus, R., et al (2009) miRNA deregulation by epigenetic silencing disrupts suppression of the oncogene PLAG1 in chronic lymphocytic leukemia. Blood 114, 3255-64.
9. Cunningham, J. M., Oberg, A. L., Borralho, P. M., Kren, B. T., French, A. J., Wang, L. et al (2009) Evaluation of a new high-dimensional miRNA profi ling platform. BMC Med Genomics 2, 57.
10. Sarver, A. L., French, A. J., Borralho, P. M., Thayanithy, V., Oberg, A. L., Silverstein, K. A., et al (2009) Human colon cancer profi les show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states. BMC Cancer 18, 401.
11. Wang, L., Tang, H., Thayanithy, V., Subramanian, S., Oberg, A. L., Cunningham, J. M., et al (2009) Gene networks and microRNAs implicated in aggressive prostate cancer. Cancer Res 69, 9490-7.
12. Pradervand, S., Weber, J., Lemoine, F., Consales, F., Paillusson, A., Dupasquier, M., et al (2010) Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs. Biotechniques 48, 219-22.
13. Git, A., Dvinge, H., Salmon-Divon, M., Osborne, M., Claudia Kutter, C., Hadfi eld, J., et al (2010) Systematic comparison of microarray profi ling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 16, 991-1006.
14. Gaarz, A., Debey-Pascher, S., Classen, S., Eggle, D., Gathof, B., Chen, J., et al (2010) Bead array-based microrna expression profi ling of peripheral blood and the impact of different RNA isolation approaches. J Mol Diagn 12, 335-44.
15. Cox, M. B., Cairns, M. J., Gandhi, K. S., Carroll, A. P., Moscovis, S., Stewart, G. J. et al (2010) MicroRNAs miR-17 and miR-20a inhibit T cell activation genes and are under-expressed in MS whole blood. PLoS One 5, e12132.
16. Kim, T H., Kim, Y. K., Kwon, Y., Heo, J. H., Kang, H., Kim, G., et al (2010) Deregulation of miR-519a, 153, and 485-5p and its clinicopathological relevance in ovarian epithelial tumours. Histopathology 57, 734-43
17. Smeets, A, Daemen, A., Vanden Bempt, I., Gevaert, O., Claes, B., Wildiers, H., et al (2010) Prediction of lymph node involvement in breast cancer from primary tumor tissue using gene expression profi ling and miRNAs. Breast Cancer Res Treat, doi: 10.1007/s10549- 010-1265-5.
18. Li, J. H., Xiao, X., Zhang, Y. N., Wang, Y. M., Feng, L. M., Wu, Y. M., et al (2011) MicroRNA miR-886-5p inhibits apoptosis by downregulating Bax expression in human cervical carcinoma cells. Gynecol Oncol 120, 145-51.
19. Iwaniuk, K M., Schira, J., Weinhold, S., Jung, M., Adjaye, J., Müller, H. W., et al (2011) Network-Like Impact of MicroRNAs on Neuronal Lineage Differentiation of Unrestricted Somatic Stem Cells from Human Cord Blood. Stem Cells Dev, doi: 10.1089/ scd.2010.0341.
20. Link, A., Balaguer, F., Shen, Y., Nagasaka, T., Lozano, J. J., Boland, C. R., et al (2010) Fecal MicroRNAs as novel biomarkers for colon cancer screening. Cancer Epidemiol Biomarkers Prev 19, 1766-74.
21. Polikepahad, S., Knight, J. M., Naghavi, A. O., Oplt, T., Creighton, C. J., Shaw, C., et al (2010) Proinfl ammatory role for let-7 microRNAS in experimental asthma. J Biol Chem 285, 30139-49.
22. Karere, G. M., Glenn, J. P., VandeBerg, J. L, and Cox, L.A. (2010) Identifi cation of baboon microRNAs expressed in liver and lymphocytes. J Biomed Sci 17, 54.