Five novel species of the anamorphic genus Candida in the Cyberlindnera clade isolated from natural substrates in Taiwan

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 1, 2012, Pages 9-21

  Chang, Chin Feng ^a   Liu, Yi Ru ^a   Chen, Shan Fu ^b   Naumov, Gennadi I ^c   Naumova, Elena S ^c   Lee, Ching Fu ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b Chu Hwa University of Medical Technology   (Taiwan)

^c STATE RESEARCH INSTITUTE OF GENETICS AND SELECTION OF INDUSTRIAL MICROORGANISMS   (Russian Federation)

Author keywords

Candida; Cyberlindnera; New yeast species

Indexed keywords

INTERNAL TRANSCRIBED SPACER; LARGE SUBUNIT RIBOSOMAL RNA;

ANAMORPH; ARTICLE; ASCOSPORE; CANDIDA; CANDIDA EASANENSIS; CANDIDA HUNGCHUNANA; CANDIDA MAESA; CANDIDA PATTANIENSIS; CANDIDA STAUNTONICA; CANDIDA TAKATA; CANDIDA TAOYUANICA; CANDIDA VARTIOVAARAE; CLADISTICS; CONTROLLED STUDY; CYBERLINDNERA AMYLOPHILA; CYBERLINDNERA JAPONICA; CYBERLINDNERA MEYERAE; CYBERLINDNERA MISSISSIPPIENSIS; CYBERLINDNERA SATURNUS; FUNGAL REPRODUCTION; FUNGAL STRAIN; FUNGUS GROWTH; FUNGUS IDENTIFICATION; GENE SEQUENCE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; TAIWAN;

CANDIDA; CLUSTER ANALYSIS; DNA, FUNGAL; DNA, RIBOSOMAL; ENVIRONMENTAL MICROBIOLOGY; GENES, RRNA; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; RNA, FUNGAL; RNA, RIBOSOMAL; SEQUENCE ANALYSIS, DNA; TAIWAN;

CANDIDA; MAESA;

EID: 84862879009     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9708-0     Document Type: Article

References (22)

1. Chen B, Huang X, Zheng JW, Li SP, He J (2009) Candida mengyuniae sp. nov., a metsulfuron-methyl-resistant yeast. Int J Syst Evol Microbiol 59:1237-1241
2. Felsenstein J (1995) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
3. Jindamorakot S, Am-in S, Thuy TT, Duy ND, Kawasaki H, Potacharoen W, Limtong S, Tanticharoen M, Nakase T (2004) Candida easanensis sp. nov., Candida pattaniensis sp. nov. and Candida nakhonratchasimensis sp. nov., three new species of yeasts isolated from insect frass in Thailand. J Gen Appl Microbiol 50:261-269
4. Kurtzman CP (2000) Four new yeasts in the Pichia anomala clade. Int J Syst Evol Microbiol 50:395-404
5. Kurtzman CP (2011) Lindnera Kurtzman, Robnett, Basehoar- Powers (2008). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 521-543
6. Kurtzman CP, Robnett CJ (1995) Molecular relationship among hyphal ascomycetous yeasts and yeast like taxa. Can J Bot 73:824-830
7. Kurtzman CP, Robnett CJ (1997) Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 50 end of the large subunit (26s) ribosomal DNA gene. J Clin Microbiol 35:1216-1223
8. Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Anton van Leeuwenhoek 73:331-371
9. Kurtzman CP, Robnett CJ, Basehoar-Powers E (2008) Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 8:939-954
10. Kurtzman CP, Fell JW, Boekhout T, Robert V (2011a) Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 137-144
11. Kurtzman CP, Fell JW, Boekhout T (2011b) Gene sequence analyses and other DNA-based methods for yeast species recognition. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 137-144
12. Lachance M-A, Boekhout T, Scorzetti G, Fell JW, Kurzman CP (2011) Candida Berkhout (1923). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 987-1278
13. Lee CF, Liu CH, Young SS, Chang KS (2008) Kazachstania jiainicus sp. nov., an ascomycetous yeast species isolated from soil in Taiwan. FEMS Yeast Res 8:114-118
14. Liu CH, Young SS, Chang TC, Lee CF (2008) Candida dajiaensis sp. nov., Candida yuanshanicus sp. nov., Candida jianshihensis sp. nov., and Candida sanyiensis sp. nov., four anamorphic, ascomycetous yeast species isolated from soil in Taiwan. FEMS Yeast Res 8:815-822
15. Liu YR, Huang LY, Young SS, Chang CF, Lee CF (2011) Asterotremella meifongana sp. nov. and Asterotremella nantouana sp. nov., two anamorphic basidiomycetous yeasts isolated from soil and mushrooms. Anton van Leeuwenhoek 99:643-650
16. Mestre MC, Rose CA, Fontenla SB (2011) Lindnera rhizosphaerae sp. nov., a yeast species isolated from rhizospheric soil. Int J Syst Evol Microbiol 61:985-988
17. Minter DW (2009) Cyberlindnera, a replacement name for Lindnera Kurtzman et al., nom. Illegit. Mycotaxon 110:473-476
18. Shenoy BD, Jeewon R, Hyde KD (2007) Impact of DNA sequence-data on the taxonomy of anamorphic fungi. Fungal Divers 26:1-54
19. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
20. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
21. Wang SA, Bai FY (2010) Lindnera wuzhiensis sp. nov., a novel ascomycetous yeast species. J Gen Appl Microbiol 56: 409-412
22. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a sequencing guide to methods and applications. Academic Press, San Diego, pp 315-322