-
2
-
-
0038518200
-
Dating the tree of life
-
DOI 10.1126/science.1077795
-
Benton MJ, Ayala FJ. 2003. Dating the tree of life. Science 300:1698-1700. (Pubitemid 36712555)
-
(2003)
Science
, vol.300
, Issue.5626
, pp. 1698-1700
-
-
Benton, M.J.1
Ayala, F.J.2
-
3
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
DOI 10.1093/molbev/msl150
-
Benton MJ, Donoghue PCJ. 2007. Paleontological evidence to date the tree of life. Mol Biol Evol. 24:26-53. (Pubitemid 46026279)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.1
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
4
-
-
33745067419
-
The gain and loss of genes during 600 million years of vertebrate evolution
-
Blomme T, Vandepoele K, De Bodt S, Simillion C,Maere S, Van de Peer Y. 2006. The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol. 7:R43.
-
(2006)
Genome Biol.
, vol.7
-
-
Blomme, T.1
Vandepoele, K.2
De Bodt, S.3
Simillion, C.4
Maere, S.5
Van De Peer, Y.6
-
5
-
-
77952735087
-
Similarly strong purifying selection acts on human disease genes of all evolutionary ages
-
Cai J, Borenstein E, Chen R, Petrov D. 2009. Similarly strong purifying selection acts on human disease genes of all evolutionary ages. Genome Biol Evol. 1:131.
-
(2009)
Genome Biol Evol.
, vol.1
, pp. 131
-
-
Cai, J.1
Borenstein, E.2
Chen, R.3
Petrov, D.4
-
6
-
-
56549119570
-
Turning a hobby into a job: How duplicated genes find new functions
-
DOI 10.1038/nrg2482, PII NRG2482
-
Conant G, Wolfe K. 2008. Turning a hobby into a job: How duplicated genes find new functions. Nat Rev Genet. 9:938-950. (Pubitemid 352719432)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.12
, pp. 938-950
-
-
Conant, G.C.1
Wolfe, K.H.2
-
7
-
-
38449119517
-
Gene duplication: A drive for phenotypic diversity and cause of human disease
-
Conrad B, Antonarakis SE. 2007. Gene duplication: A drive for phenotypic diversity and cause of human disease. Annu Rev Genomics Hum Genet. 8:17-35.
-
(2007)
Annu Rev Genomics Hum Genet.
, vol.8
, pp. 17-35
-
-
Conrad, B.1
Antonarakis, S.E.2
-
8
-
-
79955829987
-
Exploring the potential relevance of human-specific genes to complex disease
-
Cooper D, Kehrer-Sawatzki H. 2011. Exploring the potential relevance of human-specific genes to complex disease. Hum Genomics 5: 99-107.
-
(2011)
Hum Genomics
, vol.5
, pp. 99-107
-
-
Cooper, D.1
Kehrer-Sawatzki, H.2
-
9
-
-
56449113261
-
An ancient evolutionary origin of genes associated with human genetic diseases
-
Domazet-Loso T, Tautz D. 2008. An ancient evolutionary origin of genes associated with human genetic diseases. Mol Biol Evol. 25:2699-2707.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 2699-2707
-
-
Domazet-Loso, T.1
Tautz, D.2
-
10
-
-
34447333669
-
Rocks and clocks: calibrating the Tree of Life using fossils and molecules
-
DOI 10.1016/j.tree.2007.05.005, PII S0169534707001553
-
Donoghue PCJ, Benton MJ. 2007. Rocks and clocks: Calibrating the tree of life using fossils and molecules. Trends Ecol Evol. 22: 424-431. (Pubitemid 47058779)
-
(2007)
Trends in Ecology and Evolution
, vol.22
, Issue.8
, pp. 424-431
-
-
Donoghue, P.C.J.1
Benton, M.J.2
-
11
-
-
13244255415
-
Muscle: A multiple sequence alignment method with reduced time and space complexity
-
Edgar R. 2004. Muscle: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.1
-
13
-
-
34547140875
-
The human disease network
-
DOI 10.1073/pnas.0701361104
-
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL. 2007. The human disease network. Proc Natl Acad Sci U S A. 104: 8685-8690. (Pubitemid 47175372)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.21
, pp. 8685-8690
-
-
Goh, K.-I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.-L.6
-
14
-
-
38049133600
-
All duplicates are not equal: The difference between small-scale and genome duplication
-
Hakes L, Pinney J, Lovell S, Oliver S, Robertson D. 2007. All duplicates are not equal: The difference between small-scale and genome duplication. Genome Biol. 8:R209.
-
(2007)
Genome Biol.
, vol.8
-
-
Hakes, L.1
Pinney, J.2
Lovell, S.3
Oliver, S.4
Robertson, D.5
-
15
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
DOI 10.1093/nar/gki033
-
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. 2005. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 33: D514-D517. (Pubitemid 40207927)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
16
-
-
0346801873
-
The Gene Oncology (GO) database and informatics resource
-
Harris MA, Clark J, Ireland A, et al. (60 co-Authors). 2004. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32:D258-261. (Pubitemid 38081651)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.M.12
Blake, J.A.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.T.17
Hill, D.P.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.M.22
Christie, K.R.23
Costanzo, M.C.24
Dwight, S.S.25
Engel, S.26
Fisk, D.G.27
Hirschman, J.E.28
Hong, E.L.29
Nash, R.S.30
Sethuraman, A.31
Theesfeld, C.L.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.Y.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.M.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
De La Cruz, N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
17
-
-
33751381461
-
TimeTree: A public knowledge-base of divergence times among organisms
-
DOI 10.1093/bioinformatics/btl505
-
Hedges SB, Dudley J, Kumar S. 2006. Timetree: A public knowledgebase of divergence times among organisms. Bioinformatics 22: 2971-2972. (Pubitemid 44811578)
-
(2006)
Bioinformatics
, vol.22
, Issue.23
, pp. 2971-2972
-
-
Hedges, S.B.1
Dudley, J.2
Kumar, S.3
-
18
-
-
41949116392
-
Role of duplicate genes in robustness against deleterious human mutations
-
Hsiao T-L,VitkupD. 2008. Role of duplicate genes in robustness against deleterious human mutations. PLoS Genet. 4:e1000014.
-
(2008)
PLoS Genet.
, vol.4
-
-
Hsiao, T.-L.1
Vitkup, D.2
-
19
-
-
4844229391
-
Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes
-
(12 co-Authors
-
Huang H,Winter EE,Wang H, et al. (12 co-Authors). 2004. Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes. Genome Biol. 5:R47.
-
(2004)
Genome Biol.
, vol.5
-
-
Huang, H.1
Winter, E.E.2
Wang, H.3
-
20
-
-
0033982936
-
Kegg: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. 2000. Kegg: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28:27.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27
-
-
Kanehisa, M.1
Goto, S.2
-
21
-
-
34648816680
-
The 2R hypothesis: an update
-
DOI 10.1016/j.coi.2007.07.009, PII S0952791507001239, Hematopoietic cell death/Immunogenetics/Transplantation
-
Kasahara M. 2007. The 2R hypothesis: An update. Curr Opin Immunol. 19:547-552. (Pubitemid 47464919)
-
(2007)
Current Opinion in Immunology
, vol.19
, Issue.5
, pp. 547-552
-
-
Kasahara, M.1
-
22
-
-
33644956987
-
Themutation load in small populations
-
Kimura M, Maruyama T, CrowJ. 1963. Themutation load in small populations. Genetics 48:1303.
-
(1963)
Genetics
, vol.48
, pp. 1303
-
-
Kimura, M.1
Maruyama, T.2
Crow, J.3
-
23
-
-
33644876458
-
Treefam: A curated database of phylogenetic trees of animal gene families
-
(15 co-Authors
-
Li H, Coghlan A, Ruan J, et al. (15 co-Authors). 2006. Treefam: A curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34:D572-D580.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Li, H.1
Coghlan, A.2
Ruan, J.3
-
24
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
DOI 10.1038/nrg1204
-
Long M, Betrán E, Thornton K,WangW. 2003. The origin of newgenes: Glimpses from the young and old. Nat Rev Genet. 4:865-875. (Pubitemid 37345613)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.11
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
25
-
-
3543106033
-
Genome-wide identification of genes likely to be involved in human genetic disease
-
DOI 10.1093/nar/gkh605
-
López-Bigas N, Ouzounis CA. 2004. Genome-wide identification of genes likely to be involved in human genetic disease. Nucleic Acids Res. 32:3108-3114. (Pubitemid 39023002)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.10
, pp. 3108-3114
-
-
Lopez-Bigas, N.1
Ouzounis, C.A.2
-
26
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
27
-
-
0025682946
-
Mutation load and the survival of small populations
-
Lynch M, Gabriel W. 1990. Mutation load and the survival of small populations. Evolution 44:1725-1737.
-
(1990)
Evolution
, vol.44
, pp. 1725-1737
-
-
Lynch, M.1
Gabriel, W.2
-
28
-
-
77952679366
-
Ohnologs in the human genome are dosage balanced and frequently associatedwith disease
-
Makino T, McLysaght A. 2010. Ohnologs in the human genome are dosage balanced and frequently associatedwith disease. Proc Natl Acad Sci U S A. 107:9270.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 9270
-
-
Makino, T.1
McLysaght, A.2
-
29
-
-
60149083509
-
A burst of segmental duplications in the genome of the African great ape ancestor
-
(20 co-Authors
-
Marques-Bonet T, Kidd J, Ventura M, et al. (20 co-Authors). 2009. A burst of segmental duplications in the genome of the African great ape ancestor. Nature 457:877-881.
-
(2009)
Nature
, vol.457
, pp. 877-881
-
-
Marques-Bonet, T.1
Kidd, J.2
Ventura, M.3
-
31
-
-
33747173377
-
Mutation, selection and the future of human evolution
-
DOI 10.1016/j.tig.2006.07.005, PII S0168952506002174
-
Reed F, Aquadro C. 2006. Mutation, selection and the future of human evolution. Trends Genet. 22:479-484. (Pubitemid 44233720)
-
(2006)
Trends in Genetics
, vol.22
, Issue.9
, pp. 479-484
-
-
Reed, F.A.1
Aquadro, C.F.2
-
32
-
-
0036207383
-
Experimental tests of the adaptive significance of sexual recombination
-
DOI 10.1038/nrg760
-
RiceW. 2002. Experimental tests of the adaptive significance of sexual recombination. Nat Rev Genet. 3:241-251. (Pubitemid 34279793)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.4
, pp. 241-251
-
-
Rice, W.R.1
-
33
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Smith J, Haigh J. 1974. The hitch-hiking effect of a favourable gene. Genet Res. 23:23-35.
-
(1974)
Genet Res.
, vol.23
, pp. 23-35
-
-
Smith, J.1
Haigh, J.2
-
34
-
-
0242285634
-
Human disease genes: Patterns and predictions
-
DOI 10.1016/S0378-1119(03)00772-8
-
Smith NGC, Eyre-Walker A. 2003. Human disease genes: Patterns and predictions. Gene 318:169-175. (Pubitemid 37338402)
-
(2003)
Gene
, vol.318
, Issue.1-2
, pp. 169-175
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
35
-
-
7444227970
-
Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: Evolutionary evidence for differences in molecular effects
-
DOI 10.1073/pnas.0404380101
-
Thomas PD, Kejariwal A. 2004. Coding single-nucleotide polymorphisms associated with complex vs. mendelian disease: Evolutionary evidence for differences inmolecular effects. Proc Natl Acad Sci U S A. 101:15398-15403. (Pubitemid 39441553)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.43
, pp. 15398-15403
-
-
Thomas, P.D.1
Kejariwal, A.2
-
36
-
-
59949096873
-
Ensemblcompara genetrees: Complete, duplication-Aware phylogenetic trees in vertebrates
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. Ensemblcompara genetrees: Complete, duplication-Aware phylogenetic trees in vertebrates. Genome Res . 19:327-335.
-
(2009)
Genome Res .
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
37
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
38
-
-
70350221909
-
Copy number variation in human health, disease, and evolution
-
Zhang F, Gu W, Hurles M, Lupski J. 2009. Copy number variation in human health, disease, and evolution. Annu Rev Genomics Hum Genet . 10:451-481.
-
(2009)
Annu Rev Genomics Hum Genet .
, vol.10
, pp. 451-481
-
-
Zhang, F.1
Gu, W.2
Hurles, M.3
Lupski, J.4
|