A novel Acetyl-CoA synthetase short-chain subfamily member 1 (Acss1) gene indicates a dynamic history of paralogue retention and loss in vertebrates

Gene

Volumn 497, Issue 2, 2012, Pages 249-255

  Castro, L Filipe C ^a   Lopes Marques, Monica ^a   Wilson, Jonathan M ^a   Rocha, Eduardo ^a,b   Reis Henriques, Maria A ^a   Santos, Miguel M ^a,b   Cunha, Isabel ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b UNIVERSITY OF PORTO   (Portugal)

Author keywords

ACSS1; Gene loss; Genome duplications; Paralogue retention

Indexed keywords

ACETYL COENZYME A SHORT CHAIN SYNTHETASE 1; ACETYL COENZYME A SHORT CHAIN SYNTHETASE 1A; ACETYL COENZYME A SHORT CHAIN SYNTHETASE 1B; ACETYL COENZYME A SYNTHETASE; SHORT CHAIN FATTY ACID; UNCLASSIFIED DRUG;

ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; GENE DUPLICATION; GENE LOSS; GENETIC VARIABILITY; GENOME; HUMAN; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORYZIAS; PHYLOGENY; PRIORITY JOURNAL; SYNTENY; TELEOST;

ACETATE-COA LIGASE; ANIMALS; BASE SEQUENCE; DNA BARCODING, TAXONOMIC; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENETIC LOCI; GENOME; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN ISOFORMS; VERTEBRATES;

AMPHIBIA; AVES; BRANCHIOSTOMA LANCEOLATUM; CHONDRICHTHYES; DANIO RERIO; MAMMALIA; ORYZIINAE; REPTILIA; SAUROPSIDA; TELEOSTEI; VERTEBRATA;

EID: 84862829496     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.01.013     Document Type: Article

References (24)

1. Abascal F., Zardoya R., Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
2. Boardman P.E., et al. A comprehensive collection of chicken cDNAs. Curr. Biol. 2002, 12:1965-1969.
3. Castro L.F., Wilson J.M., Gonçalves O., Galante-Oliveira S., Rocha E., Cunha I. The evolutionary history of the stearoyl-CoA desaturase gene family in vertebrates. BMC Evol. Biol. 2011, 11:132.
4. Evans H., et al. Ancient and modern duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes. Physiol. Genomics 2008, 35:18-29.
5. Force A., Lynch M., Pickett F.B., Amores A., Yan Y.L., Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545.
6. Fujino T., Kondo J., Ishikawa M., Morikawa K., Yamamoto T.T. Acetyl-CoA synthetase 2, a mitochondrial matrix enzyme involved in the oxidation of acetate. J. Biol. Chem. 2001, 276:11420-11426.
7. Furlong R.F., Graham A. Vertebrate neurogenin evolution: long-term maintenance of redundant duplicates. Dev. Genes Evol. 2005, 215:639-644.
8. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
9. Ikeda Y., et al. Transcriptional regulation of the murine acetyl-CoA synthetase 1 gene through multiple clustered binding sites for sterol regulatory element-binding proteins and a single neighboring site for Sp1. J. Biol. Chem. 2001, 276:34259-34269.
10. Jaillon O., et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004, 431:946-957.
11. Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 2008, 9:286-298.
12. Kuraku S., Meyer A., Kuratani S. Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?. Mol. Biol. Evol. 2009, 26:47-59.
13. McGonnell I.M., et al. Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene. Evol. Dev. 2011, 13:343-351.
14. Mulley J.F., Holland P.W. Parallel retention of Pdx2 genes in cartilaginous fish and coelacanths. Mol. Biol. Evol. 2010, 27:2386-2391.
15. Orchard S., Anderson J.W. Substrate specificity of the short chain fattyacyl-cenzyme A synthetase of Pinus radiate. Pytochemistry 1996, 41:1465-1472.
16. Pavlidis P., Noble W.S. Matrix2png: a utility for visualizing matrix data. Bioinformatics 2003, 19:295-296.
17. Pérez-Chacón G., Astudillo A.M., Balgoma D., Balboa M.A., Balsinde J. Control of free arachidonic acid levels by phospholipases A2 and lysophospholipid acyltransferases. Biochim. Biophys. Acta 2009, 1791:1103-1113.
18. Putnam N.H., et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 2008, 453:1064-1071.
19. Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Humana Press, Totowa. S. Krawetz, S. Misener (Eds.).
20. Sakakibara I., et al. Fasting-induced hypothermia and reduced energy production in mice lacking acetyl-CoA synthetase 2. Cell Metab. 2009, 9:191-202.
21. Starai V.J., Escalante-Semerena J.C. Acetyl-coenzyme A synthetase (AMP forming). Cell. Mol. Life Sci. 2004, 61:2020-2030.
22. Venkatesh B., et al. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol. 2007, 5:e101.
23. Watkins P.A., Maiguel D., Jia Z., Pevsner J. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. J. Lipid Res. 2007, 48:2736-2750.
24. Wheeler D.L., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2007, 35:D5-D12.