Biogenesis of Epstein-Barr virus microRNAs

Molecular and Cellular Biochemistry

Volumn 365, Issue 1-2, 2012, Pages 203-210

  Kim, Do Nyun ^a   Lee, Suk Kyeong ^a  

^a The Catholic University of Korea   (South Korea)

Author keywords

Amanitin; C EBP ; Epstein Barr virus; MicroRNAs; RNA polymerase II

Indexed keywords

ALPHA AMANITIN; BART MICRORNA; BHRF1 MICRORNA; CCAAT ENHANCER BINDING PROTEIN BETA; DICER; DROSHA PROTEIN; MICRORNA; MYC PROTEIN; RNA POLYMERASE II; SINGLE STRANDED RNA; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANIMAL CELL; ARTICLE; B LYMPHOCYTE; BINDING SITE; BIOGENESIS; CANCER CELL CULTURE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME INHIBITION; EPSTEIN BARR VIRUS; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUNCTION; HUMAN; HUMAN CELL; NASOPHARYNX CARCINOMA; NONHUMAN; RNA INTERFERENCE; RNA PROCESSING; RNA STRUCTURE; RNA SYNTHESIS; RNA TRANSCRIPTION; STOMACH CARCINOMA; TRANSCRIPTION INITIATION SITE; VIRUS LATENCY;

ALPHA-AMANITIN; B-LYMPHOCYTES; BASE SEQUENCE; CCAAT-ENHANCER-BINDING PROTEIN-BETA; CELL LINE, TUMOR; DEAD-BOX RNA HELICASES; GENE EXPRESSION REGULATION, VIRAL; GENE KNOCKDOWN TECHNIQUES; HERPESVIRUS 4, HUMAN; HUMANS; MICRORNAS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; RIBONUCLEASE III; RNA POLYMERASE II; RNA, VIRAL; TRANSCRIPTION, GENETIC; VIRUS LATENCY;

HERPESVIRIDAE; HUMAN HERPESVIRUS 4;

EID: 84862823890     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-012-1261-7     Document Type: Article

References (37)

1. MA Epstein BG Achong YM Barr 1964 Virus Particles in Cultured Lymphoblasts from Burkitt's Lymphoma Lancet 1 7335 702 703 14107961 10.1016/S0140-6736(64)91524-7 1:STN:280:DyaF2c%2FmsFKmtw%3D%3D
2. LS Young PG Murray 2003 Epstein-Barr virus and oncogenesis: from latent genes to tumours Oncogene 22 33 5108 5121 12910248 10.1038/sj.onc.1206556 1:CAS:528:DC%2BD3sXmtFahurc%3D
3. LS Young AB Rickinson 2004 Epstein-Barr virus: 40 years on Nat Rev Cancer 4 10 757 768 15510157 10.1038/nrc1452 1:CAS:528:DC%2BD2cXos1ymu78%3D
4. JM Middeldorp AA Brink AJ van den Brule CJ Meijer 2003 Pathogenic roles for Epstein-Barr virus (EBV) gene products in EBV-associated proliferative disorders Crit Rev Oncol Hematol 45 1 1 36 12482570 10.1016/S1040-8428(02)00078- 1
5. J van Beek AA Brink MB Vervoort MJ van Zijp CJ Meijer AJ van den Brule JM Middeldorp 2003 In vivo transcription of the Epstein-Barr virus (EBV) BamHI-A region without associated in vivo BARF0 protein expression in multiple EBV-associated disorders J Gen Virol 84 Pt 10 2647 2659 13679598 10.1099/vir.0.19196-0
6. A Hiraki N Fujii K Masuda K Ikeda M Tanimoto 2001 Genetics of Epstein-Barr virus infection Biomed Pharmacother 55 7 369 372 11669499 10.1016/S0753-3322(01)00084-1 1:CAS:528:DC%2BD3MXptVCqsrg%3D
7. DP Bartel 2004 MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2 281 297 14744438 10.1016/S0092-8674(04)00045-5 1:CAS:528: DC%2BD2cXhtVals7o%3D
8. VN Kim J Han MC Siomi 2009 Biogenesis of small RNAs in animals Natl Rev Mol Cell Biol 10 2 126 139 10.1038/nrm2632 1:CAS:528:DC%2BD1MXpsVCitA%3D%3D
9. GM Borchert W Lanier BL Davidson 2006 RNA polymerase III transcribes human microRNAs Nat Struct Mol Biol 13 12 1097 1101 17099701 10.1038/nsmb1167 1:CAS:528:DC%2BD28Xht1KrurnO
10. S Pfeffer A Sewer M Lagos-Quintana R Sheridan C Sander FA Grasser LF van Dyk CK Ho S Shuman M Chien JJ Russo J Ju G Randall BD Lindenbach CM Rice V Simon DD Ho M Zavolan T Tuschl 2005 Identification of microRNAs of the herpesvirus family Nat Methods 2 4 269 276 15782219 10.1038/nmeth746 1:CAS:528: DC%2BD2MXisFejtbo%3D
11. V Ambros 2004 The functions of animal microRNAs Nature 431 7006 350 355 15372042 10.1038/nature02871 1:CAS:528:DC%2BD2cXnsFaiu7g%3D
12. JS Mattick Makunin IV 2005 Small regulatory RNAs in mammals Hum Mol Genet 14 Spec No 1 R121 R132 15809264 10.1093/hmg/ddi101
13. EH Baehrecke 2003 miRNAs: micro managers of programmed cell death Curr Biol 13 12 R473 R475 12814564 10.1016/S0960-9822(03)00405-6 1:CAS:528: DC%2BD3sXkvVKgtro%3D
14. S Pfeffer M Zavolan FA Grasser M Chien JJ Russo J Ju B John AJ Enright D Marks C Sander T Tuschl 2004 Identification of virus-encoded microRNAs Science 304 5671 734 736 15118162 10.1126/science.1096781 1:CAS:528:DC%2BD2cXjsV2gtL0%3D
15. A Grundhoff CS Sullivan D Ganem 2006 A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses RNA 12 5 733 750 16540699 10.1261/rna.2326106 1:CAS:528:DC%2BD28XksVKrsr4%3D
16. X Cai A Schafer S Lu JP Bilello RC Desrosiers R Edwards N Raab-Traub BR Cullen 2006 Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed PLoS Pathog 2 3 e23 16557291 10.1371/journal.ppat. 0020023
17. N Kim do HS Chae ST Oh JH Kang CH Park WS Park K Takada JM Lee WK Lee SK Lee 2007 Expression of viral microRNAs in Epstein-Barr virus-associated gastric carcinoma J Virol 81 2 1033 1036 17079300 10.1128/JVI.02271-06
18. SM Jun YS Hong JS Seo YH Ko CW Yang SK Lee 2008 Viral microRNA profile in Epstein-Barr virus-associated peripheral T cell lymphoma Br J Haematol 142 2 320 323 18503588 10.1111/j.1365-2141.2008.07186.x 1:CAS:528:DC%2BD1cXpslGrtbc%3D
19. J Nishikawa C Kiss S Imai K Takada K Okita G Klein L Szekely 2003 Upregulation of the truncated basic hair keratin 1(hHb1-DeltaN) in carcinoma cells by Epstein-Barr virus (EBV) Int J Cancer 107 4 597 602 14520698 10.1002/ijc.11289 1:CAS:528:DC%2BD3sXoslCjsr0%3D
20. Y Lee M Kim J Han KH Yeom S Lee SH Baek VN Kim 2004 MicroRNA genes are transcribed by RNA polymerase II EMBO J 23 20 4051 4060 15372072 10.1038/sj.emboj.7600385 1:CAS:528:DC%2BD2cXotlCrsrs%3D
21. G Hutvagner J McLachlan AE Pasquinelli E Balint T Tuschl PD Zamore 2001 A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA Science 293 5531 834 838 11452083 10.1126/science.1062961 1:CAS:528:DC%2BD3MXlvVKksb4%3D
22. M Sugiura S Imai M Tokunaga S Koizumi M Uchizawa K Okamoto T Osato 1996 Transcriptional analysis of Epstein-Barr virus gene expression in EBV-positive gastric carcinoma: unique viral latency in the tumour cells Br J Cancer 74 4 625 631 8761381 10.1038/bjc.1996.412 1:CAS:528:DyaK28XlvVWjtL8%3D
23. R Amoroso L Fitzsimmons WA Thomas GL Kelly M Rowe AI Bell 2011 Quantitative studies of Epstein-Barr virus-encoded microRNAs provide novel insights into their regulation J Virol 85 2 996 1010 21068248 10.1128/JVI.01528-10 1:CAS:528:DC%2BC3MXisVOktbY%3D
24. RH Edwards AR Marquitz N Raab-Traub 2008 Epstein-Barr virus BART microRNAs are produced from a large intron prior to splicing J Virol 82 18 9094 9106 18614630 10.1128/JVI.00785-08 1:CAS:528:DC%2BD1cXhtVyktb3I
25. LA Brooks AL Lear LS Young AB Rickinson 1993 Transcripts from the Epstein-Barr virus BamHI A fragment are detectable in all three forms of virus latency J Virol 67 6 3182 3190 8388496 1:CAS:528:DyaK3sXkvVyhsb4%3D
26. H Chen P Smith RF Ambinder SD Hayward 1999 Expression of Epstein-Barr virus BamHI-A rightward transcripts in latently infected B cells from peripheral blood Blood 93 9 3026 3032 10216099 1:CAS:528:DyaK1MXivVyltb8%3D
27. R Longnecker CL Miller XQ Miao B Tomkinson E Kieff 1993 The last seven transmembrane and carboxy-terminal cytoplasmic domains of Epstein-Barr virus latent membrane protein 2 (LMP2) are dispensable for lymphocyte infection and growth transformation in vitro J Virol 67 4 2006 2013 8383224 1:CAS:528:DyaK3sXitlSjurw%3D
28. W King AL Thomas-Powell N Raab-Traub M Hawke E Kieff 1980 Epstein-Epstein-Barr virus RNA. V. Viral RNA in a restringently infected, growth-transformed cell line J Virol 36 2 506 518 6253674 1:CAS:528: DyaL3cXmtlCqu74%3D
29. L Xing E Kieff 2007 Epstein-Barr virus BHRF1 micro- and stable RNAs during latency III and after induction of replication J Virol 81 18 9967 9975 17626073 10.1128/JVI.02244-06 1:CAS:528:DC%2BD2sXhtVeht7fJ
30. SD Abbot M Rowe K Cadwallader A Ricksten J Gordon F Wang L Rymo AB Rickinson 1990 Epstein-Barr virus nuclear antigen 2 induces expression of the virus-encoded latent membrane protein J Virol 64 5 2126 2134 2157875 1:CAS:528:DyaK3cXktVChtbY%3D
31. F Wang SF Tsang MG Kurilla JI Cohen E Kieff 1990 Epstein-Barr virus nuclear antigen 2 transactivates latent membrane protein LMP1 J Virol 64 7 3407 3416 2352328 1:CAS:528:DyaK3cXksFKlsbs%3D
32. H Li J Minarovits 2003 Host cell-dependent expression of latent Epstein-Barr virus genomes: regulation by DNA methylation Adv Cancer Res 89 133 156 14587872 10.1016/S0065-230X(03)01004-2 1:CAS:528:DC%2BD2cXptVak
33. Q Tao KD Robertson 2003 Stealth technology: how Epstein-Barr virus utilizes DNA methylation to cloak itself from immune detection Clin Immunol 109 1 53 63 14585276 10.1016/S1521-6616(03)00198-0 1:CAS:528:DC%2BD3sXosFSmsLo%3D
34. L Zhang JS Pagano 1999 Interferon regulatory factor 2 represses the Epstein-Barr virus BamHI Q latency promoter in type III latency Mol Cell Biol 19 4 3216 3223 10082588 1:CAS:528:DyaK1MXit1eisb0%3D
35. F Tang P Hajkova D O'Carroll C Lee A Tarakhovsky K Lao MA Surani 2008 MicroRNAs are tightly associated with RNA-induced gene silencing complexes in vivo Biochem Biophys Res Commun 372 1 24 29 18474225 10.1016/j.bbrc.2008.04.137 1:CAS:528:DC%2BD1cXmvFekurw%3D
36. L Xing E Kieff 2011 cis-Acting effects on RNA processing and Drosha cleavage prevent Epstein-Barr virus latency III BHRF1 expression J Virol 85 17 8929 8939 21697496 10.1128/JVI.00336-11 1:CAS:528:DC%2BC3MXhtVKqtbnJ
37. H Chen J Huang FY Wu G Liao L Hutt-Fletcher SD Hayward 2005 Regulation of expression of the Epstein-Barr virus BamHI-A rightward transcripts J Virol 79 3 1724 1733 15650197 10.1128/JVI.79.3.1724-1733.2005 1:CAS:528: DC%2BD2MXhtFCjur8%3D