메뉴 건너뛰기




Volumn 402, Issue 9, 2012, Pages 2713-2725

A method for correcting standard-based real-time PCR DNA quantitation when the standard's polymerase reaction efficiency is significantly different from that of the unknown's

Author keywords

16S rDNA or rRNA gene; DNA quantitation; Real time PCR or qPCR

Indexed keywords

AMPLICONS; CELL EXTRACTS; CONCENTRATION DEPENDENCE; CYCLE NUMBER; DNA CONCENTRATION; DNA SOLUTIONS; MATHEMATICAL PROCEDURES; PATHOGEN DETECTION; PURIFICATION PROCESS; QUANTITATIVE POLYMERASE CHAIN REACTION; REACTION EFFICIENCY; REAL-TIME PCR; RRNA GENES; STANDARD CURVES; STANDARD SOLUTIONS;

EID: 84862803227     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-012-5737-9     Document Type: Article
Times cited : (10)

References (20)
  • 1
    • 0017108645 scopus 로고
    • Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus
    • 1:CAS:528:DyaE28XlsFGmt7c%3D
    • A Chien DB Edgar JM Trela 1976 Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus J Bacteriol 127 1550 1557 1:CAS:528:DyaE28XlsFGmt7c%3D
    • (1976) J Bacteriol , vol.127 , pp. 1550-1557
    • Chien, A.1    Edgar, D.B.2    Trela, J.M.3
  • 2
    • 0642281749 scopus 로고    scopus 로고
    • A short history of the polymerase chain reaction
    • 10.1007/978-1-4612-0055-0-1 1:CAS:528:DC%2BD3sXnsVShtb8%3D
    • JMS Bartlett D Stirling 2003 A short history of the polymerase chain reaction Methods Mol Biol 226 3 6 10.1007/978-1-4612-0055-0-1 1:CAS:528:DC%2BD3sXnsVShtb8%3D
    • (2003) Methods Mol Biol , vol.226 , pp. 3-6
    • Bartlett, J.M.S.1    Stirling, D.2
  • 4
    • 1642318064 scopus 로고    scopus 로고
    • Real-time PCR in the microbiology laboratory
    • DOI 10.1111/j.1198-743X.2004.00722.x
    • IM Mackay 2004 Real-time PCR in the microbiology laboratory Clin Microbiol Infect 10 190 212 10.1111/j.1198-743X.2004.00722.x 1:CAS:528:DC%2BD2cXjtFylsbs%3D (Pubitemid 38379958)
    • (2004) Clinical Microbiology and Infection , vol.10 , Issue.3 , pp. 190-212
    • Mackay, I.M.1
  • 5
    • 0035710746 scopus 로고    scopus 로고
    • -ΔΔCT method
    • DOI 10.1006/meth.2001.1262
    • ΔΔCt method Methods 25 402 408 10.1006/meth.2001.1262 1:CAS:528:DC%2BD38XhtFelt7s%3D (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 6
    • 33644844649 scopus 로고    scopus 로고
    • Statistical analysis of real-time PCR data
    • DOI 10.1186/1471-2105-7-85
    • JS Yuan A Reed F Chen CN Stewart Jr 2006 Statistical analyses of real-time PCR data BMC Bioinform 7 85 96 10.1186/1471-2105-7-85 (Pubitemid 43362095)
    • (2006) BMC Bioinformatics , vol.7 , pp. 85
    • Yuan, J.S.1    Reed, A.2    Chen, F.3    Stewart Jr., C.N.4
  • 7
    • 78650153718 scopus 로고    scopus 로고
    • Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens using a multiplex real-time PCR assay
    • 10.1007/s12161-010-9136-6
    • Y He X Yao NW Gunther Y Xie S-I Tu X Shi 2010 Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens using a multiplex real-time PCR assay Food Analytical Methods 3 321 329 10.1007/s12161-010-9136-6
    • (2010) Food Analytical Methods , vol.3 , pp. 321-329
    • He, Y.1    Yao, X.2    Gunther, N.W.3    Xie, Y.4    Tu, S.-I.5    Shi, X.6
  • 8
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • 10.1677/jme.0.0250169 1:CAS:528:DC%2BD3cXnslKgtb8%3D
    • SA Bustin 2000 Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays J Mol Endocrinol 25 169 193 10.1677/jme.0.0250169 1:CAS:528:DC%2BD3cXnslKgtb8%3D
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 9
    • 77957879859 scopus 로고    scopus 로고
    • The relationship between purely stochastic sampling error and the number of technical replicates used to estimate concentration at an extreme dilution
    • 10.1007/s00216-010-3967-2 1:CAS:528:DC%2BC3cXovVGntbw%3D
    • PL Irwin L-HT Nguyen C-Y Chen 2010 The relationship between purely stochastic sampling error and the number of technical replicates used to estimate concentration at an extreme dilution Anal Bioanal Chem 398 895 903 10.1007/s00216-010-3967-2 1:CAS:528:DC%2BC3cXovVGntbw%3D
    • (2010) Anal Bioanal Chem , vol.398 , pp. 895-903
    • Irwin, P.L.1    L-Ht, N.2    Chen, C.-Y.3
  • 10
    • 0001430760 scopus 로고    scopus 로고
    • A new mathematical model for relative quantitation in real-time RT-PCR
    • NW Pfaffi 2001 A new mathematical model for relative quantitation in real-time RT-PCR Nucleic Acids Res 29 2002 2009
    • (2001) Nucleic Acids Res , vol.29 , pp. 2002-2009
    • Pfaffi, N.W.1
  • 11
    • 0031558558 scopus 로고    scopus 로고
    • Theoretical description of the polymerase chain reaction
    • DOI 10.1006/jtbi.1997.0473
    • S Schnell C Mendoza 1997 Theoretical description of the polymerase chain reaction J Theor Biol 188 313 318 10.1006/jtbi.1997.0473 1:CAS:528: DyaK2sXnvFahtrg%3D (Pubitemid 27491564)
    • (1997) Journal of Theoretical Biology , vol.188 , Issue.3 , pp. 313-318
    • Schnell, S.1    Mendoza, C.2
  • 14
    • 0031581804 scopus 로고    scopus 로고
    • Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR)
    • DOI 10.1006/jtbi.1996.0283
    • S Schnell C Mendoza 1997 Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction J Theor Biol 184 433 440 10.1006/jtbi.1996.0283 1:CAS:528:DyaK2sXit12ltbg%3D (Pubitemid 27190350)
    • (1997) Journal of Theoretical Biology , vol.184 , Issue.4 , pp. 433-440
    • Schnell, S.1    Mendoza, C.2
  • 15
    • 0004252445 scopus 로고    scopus 로고
    • Prentice Hall Upper Saddle River
    • Zar JH (1999) Biostatistical analysis. Prentice Hall, Upper Saddle River, pp 328-330
    • (1999) Biostatistical Analysis , pp. 328-330
    • Zar, J.H.1
  • 16
    • 43049098837 scopus 로고    scopus 로고
    • Binding of nontarget microorganisms from food washes to anti-Salmonella and anti-E. coli O157 immunomagnetic beads: Most probable composition of background Eubacteria
    • 10.1007/s00216-008-1959-2 1:CAS:528:DC%2BD1cXlt1Cqs7c%3D
    • PL Irwin L-HT Nguyen C-Y Chen G Paoli 2008 Binding of nontarget microorganisms from food washes to anti-Salmonella and anti-E. coli O157 immunomagnetic beads: most probable composition of background Eubacteria Anal Bioanal Chem 391 525 536 10.1007/s00216-008-1959-2 1:CAS:528: DC%2BD1cXlt1Cqs7c%3D
    • (2008) Anal Bioanal Chem , vol.391 , pp. 525-536
    • Irwin, P.L.1    L-Ht, N.2    Chen, C.-Y.3    Paoli, G.4
  • 17
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • DOI 10.1128/AEM.66.12.5116-5122.2000
    • MT Cottrell DL Kirchman 2000 Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization Appl Environ Microbiol 66 5116 5122 10.1128/AEM.66.12.5116- 5122.2000 1:CAS:528:DC%2BD3MXjsVyhtLs%3D (Pubitemid 32217106)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.12 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 18
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • DOI 10.1006/abio.1996.9916
    • KM Ririe RP Rasmussen CT Wittwer 1997 Product differentiation by analysis of DNA melting curves during the polymerase chain reaction Anal Biochem 245 154 160 10.1006/abio.1996.9916 1:CAS:528:DyaK2sXhtlSrsbo%3D (Pubitemid 27082244)
    • (1997) Analytical Biochemistry , vol.245 , Issue.2 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 19
    • 0032091098 scopus 로고    scopus 로고
    • Quantification of lowcopy transcripts by continuous SYBR® green I monitoring during amplification
    • TB Morrison JJ Weis CT Wittwer 1998 Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification Biotechniques 24 954 962 1:CAS:528:DyaK1cXjslKrs78%3D (Pubitemid 28275129)
    • (1998) BioTechniques , vol.24 , Issue.6 , pp. 954-962
    • Morrison, T.B.1    Weis, J.J.2    Wittwer, C.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.