Genome-wide analysis of the mitogen-activated protein kinase gene family in Solanum lycopersicum

Gene

Volumn 499, Issue 1, 2012, Pages 108-120

  Kong, Fuling ^a   Wang, Jie ^a   Cheng, Lin ^a   Liu, Songyu ^a   Wu, Jian ^a   Peng, Zhen ^a   Lu, Gang ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Expression analysis; Mitogen activated protein kinase; Phylogenetic analysis; QRT PCR; Solanum lycopersicum

Indexed keywords

COMPLEMENTARY DNA; MITOGEN ACTIVATED PROTEIN KINASE;

ARABIDOPSIS; ARTICLE; EXON; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE LOCATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ASSOCIATION; HEAT STRESS; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENETICS; PLANT GROWTH; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN ISOLATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TOMATO;

AMINO ACID SEQUENCE; BASE SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOME, PLANT; LYCOPERSICON ESCULENTUM; MITOGEN-ACTIVATED PROTEIN KINASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY;

ARABIDOPSIS; LYCOPERSICON ESCULENTUM;

EID: 84862789531     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.01.048     Document Type: Article

References (48)

1. Agrawal G.K., Iwahashi H., Rakwal R. Rice MAPKs. Biochem. Biophys. Res. Commun. 2003, 302:171-180.
2. Ahlfors R., et al. Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 2004, 40:512-522.
3. Asai T., et al. MAP kinase signalling cascade in Arabidopsis innate immunity. Nature 2002, 415:977-983.
4. Beck M., Komis G., Ziemann A., Menzel D., Šamaj J. Mitogen-activated protein kinase 4 is involved in the regulation of mitotic and cytokinetic microtubule transitions in Arabidopsis thaliana. New Phytol. 2011, 189:1069-1083.
5. Boudsocq M., Lauriere C. Osmotic signaling in plants. Multiple pathways mediated by emerging kinase families. Plant Physiol. 2005, 138:1185-1194.
6. Brukhin V., Hernould M., Gonzalez N., Chevalier C., Mouras A. Flower development schedule in tomato Lycopersicon esculentum cv. sweet cherry. Sex Plant Reprod. 2003, 15:311-320.
7. Cargnello M., Roux P. Activation and function of the MAPKs and their substrates, the MAPK-activated protein kinases. Microbiol. Mol. Biol. Rev. 2011, 75:50-83.
8. Cheong Y.H., et al. BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiol. 2003, 132:1961-1972.
9. Colcombet J., Hirt H. Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem. J. 2008, 413:217-226.
10. Droillard M.J., Boudsocq M., Barbier-Bygoo H., Lauriére C. Different protein kinase families are activated by osmotic stresses in Arabidopsis thaliana cell suspensions. FEBS Lett. 2002, 527:43-50.
11. Garcia-Hernandez M., et al. TAIR: a resource for integrated Arabidopsis data. Funct. Integr. Genomics 2002, 2:239-253.
12. Hamel L.P., et al. Ancient signals: comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci. 2006, 11:192-198.
13. Higgins R., Lockwood T., Holley S., Yalamanchili R., Stratmann J.W. Changes in the extracellular pH are neither required nor sufficient for activation of mitogen-activated protein kinases (MAPKs) in response to systemin and fusicoccin in tomato. Planta 2006, 225:1535-1546.
14. Hirt H. Multiple roles of MAP kinases in plant signal transduction. Trends Plant Sci. 1997, 2:11-15.
15. Hord C., et al. Regulation of Arabidopsis early anther development by the mitogen-activated protein kinases, MPK3 and MPK6, and the ERECTA and related receptor-like kinases. Mol. Plant 2008, 1:645-658.
16. Ichimura K., Mizoguchi T., Yoshida R., Yuasa T., Shinozaki K. Various abiotic stresses rapidly activate Arabidopsis MAP kinases AtMPK4 and AtMPK6. Plant J. 2000, 24:655-665.
17. Ichimura K., Mizoguchi T., Yoshida R., Yuasa T., Shinozaki K. Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci. 2002, 7:301-308.
18. Jammes F., et al. MAP kinases MPK9 and MPK12 are preferentially expressed in guard cells and positively regulate ROS-mediated ABA signaling. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:20520-20525.
19. Johnson G.L., Lapadat R. Mitogen-activated protein kinase pathways mediated by ERK, JNK, and p38 protein kinases. Science 2002, 298:1911-1912.
20. Jonak C., Ökrész L., Bogre L., Hirt H. Complexity, cross talk and integration of plant MAP kinase signalling. Curr. Opin. Plant Biol. 2002, 5:415-424.
21. Krens S.F., Spaink H.P., Snaar-Jagalska B.E. Functions of the MAPK family in vertebrate-development. FEBS Lett. 2006, 580:4984-4990.
22. Lee S.K., et al. Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice. J. Biosci. 2011, 36:139-151.
23. Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2-δδCT method. Methods 2001, 25:402-408.
24. Marcote M.J., Carbonell J. Transient expression of a pea MAP kinase gene induced by gibberellic acid and 6-benzyladenine in unpollinated pea ovaries. Plant Mol. Biol. 2000, 44:177-186.
25. Mizoguchi T., et al. A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:765-769.
26. Nakagami H., Pitzschke A., Hirt H. Emerging MAP kinase pathways in plant stress signalling. Trends Plant Sci. 2005, 10:339-346.
27. Nicole M.C., Hame L.P., Morency M.J., Beaudoin N., Ellis B.E., Séguin A. MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases. BMC Genomics 2006, 7:223.
28. Nishihama R., Ishikawa M., Araki S., Soyano1 T., Asada T., Machida Y. The NPK1 mitogen-activated protein kinase kinase kinase is a regulator of cell-plate formation in plant cytokinesis. Gene Dev. 2001, 15:352-363.
29. Pedley K.F., Martin G.B. Identification of MAPKs and their possible MAPK kinase activators involved in the Pto-mediated defense response of tomato. J. Biol. Chem. 2004, 279:49229-49235.
30. Pitzschke A., Schikora A., Hirt H. MAPK cascade signalling networks in plant defence. Curr. Opin. Plant Biol. 2009, 12:421-426.
31. Reyna N.S., Yang Y. Molecular analysis of the rice MAP kinase gene family in relation to Magnaporthe grisea infection. Mol. Plant-Microbe Interact. 2006, 19:530-540.
32. Rohila J.S., Yang Y. Rice mitogen-activated protein kinase gene family and its role in biotic and abiotic stress response. J. Integr. Plant Biol. 2007, 49:751-759.
33. Romeis T. Protein kinases in the plant defence response. Curr. Opin. Plant Biol. 2001, 4:407-414.
34. Romeis T., Ludwig A.A., Martin R., Jones J.D.G. Calcium-dependent protein kinases play an essential role in a plant defence response. EMBO J. 2001, 20:5556-5567.
35. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
36. Samuel M.A., Ellis B.E. Double jeopardy: both over-expression and suppression of a redox-activated plant mitogen-activated protein kinase render tobacco plants ozone sensitive. Plant Cell 2002, 14:2059-2069.
37. Samuel M.A., Godfrey P., Ellis E. Ozone treatment rapidly activates MAP kinase signalling in plants. Plant J. 2000, 22:367-376.
38. Stulemeijer I., Stratmann J., Matthieu H.A. The tomato MAP kinases LeMPK1, 2 and-3 are activated during the Cf-4/Avr4-induced HR and have distinct phosphorylation specificities. Plant Physiol. 2007, 144:1481-1494.
39. Takahashi Y., Soyano T., Kosetsu K., Sasabe M., Machida Y. HINKEL kinesin, ANP MAPKKKs and MKK6/ANQ MAPKK, which phosphorylates and activates MPK4 MAPK, constitute a pathway that is required for cytokinesis in Arabidopsis thaliana. Plant Cell Physiol. 2010, 51:1766-1776.
40. Teige M., et al. The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol. Cell 2004, 15:141-152.
41. Tena G., Asai T., Chiu W.L., Sheen J. Plant mitogen-activated protein kinase signaling cascades. Curr. Opin. Plant Biol. 2001, 4:392-400.
42. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
43. Voronin V., Touraev A., Kieft H., van Lammeren A.A., Heberle-Bors E., Wilson C. Temporal and tissue-specific expression of the tobacco ntf4 MAP kinase. Plant Mol. Biol. 2001, 45:679-689.
44. Voronin V., et al. The MAP kinase kinase NtMEK2 is involved in tobacco pollen germination. FEBS Lett. 2004, 560:86-90.
45. Wilson C., Voronin V., Touraev A., Vicente O., Heberle-Bors E. A developmentally regulated MAP kinase activated by hydration in tobacco pollen. Plant Cell 1997, 2093-2110.
46. Zeng Q.N., Chen J.G., Ellis B.E. AtMPK4 is required for male-specific meiotic cytokinesis in Arabidopsis. Plant J. 2011, 67:895-906.
47. Zhang S., Klessig D.F. MAPK cascades in plant defense signaling. Trends Plant Sci. 2001, 6:520-527.
48. Zhang T., Liu Y., Yang T., Zhang L., Xu S., Xue L. Diverse signals converge at MAPK cascades in plant. Plant Physiol. Biochem. 2006, 44:274-283.