Genomic consequences of genetic rescue in an insular population of bighorn sheep (Ovis canadensis)

Molecular Ecology

Volumn 21, Issue 7, 2012, Pages 1583-1596

  Miller, J M ^a   Poissant, J ^a   Hogg, J T ^b   Coltman, D W ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b Montana Conservation Science Institute   (United States)

Author keywords

genomic clines; intraspecific hybridization; introgression; longevity; reproductive success

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; CHROMOSOME MAP; ENVIRONMENTAL PROTECTION; FEMALE; GENETIC LINKAGE; GENETIC SELECTION; GENETICS; GENOTYPE; INBREEDING; INHERITANCE; MALE; METHODOLOGY; REPRODUCTIVE FITNESS; SHEEP; UNITED STATES;

ALLELES; ANIMALS; CHROMOSOME MAPPING; CONSERVATION OF NATURAL RESOURCES; FEMALE; GENETIC FITNESS; GENETIC LINKAGE; GENOTYPE; INBREEDING; INHERITANCE PATTERNS; MALE; MICROSATELLITE REPEATS; MONTANA; SELECTION, GENETIC; SHEEP, BIGHORN;

BISON; OVIS ARIES; OVIS CANADENSIS;

EID: 84862777367     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05427.x     Document Type: Article

References (47)

1. Beh KJ, Hulme DJ, Callaghan MJ, et al. (2002) A genome scan for quantitative trait loci affecting resistance to Trichostrongylus colubriformis in sheep. Animal Genetics, 33, 97-106. (Pubitemid 34293984)
2. Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B (Methodological), 57, 289-300.
3. Bouzat J, Johnson J, Toepfer J, et al. (2009) Beyond the beneficial effects of translocations as an effective tool for the genetic restoration of isolated populations. Conservation Genetics, 10, 191-201.
4. Buerkle CA, (2005) Maximum-likelihood estimation of a hybrid index based on molecular markers. Molecular Ecology Notes, 5, 684-687. (Pubitemid 41716886)
5. Carling MD, Brumfield RT, (2008) Haldane's rule in an avian system: using cline theory and divergence population genetics to test for differential introgression of mitochndrial, autosomal, and sex-linked loci accross the passerina bunting hybrid zone. Evolution, 62, 2600-2615.
6. Carneiro M, Blanco-Aguiar JA, Villafuerte R, et al. (2010) Speciation in the European rabbit (Oryctolagus cuniculus): islands of differentiation on the X chromosome and autosomes. Evolution, 64, 3443-3460.
7. Cavanagh CR, Jonas E, Hobbs M, et al. (2010) Mapping Quantitative Trait Loci (QTL) in sheep. III. QTL for carcass composition traits derived from CT scans and aligned with a meta-assembly for sheep and cattle carcass QTL. Genetics, Selection, Evolution, 42, doi: 10.1186/1297-9686-42-36.
8. Coltman DW, Festa-Bianchet M, Jorgenson JT, Strobeck C, (2002) Age-dependent sexual selection in bighorn rams. Proceedings of the Royal Society B-Biological Sciences, 269, 165-172. (Pubitemid 34107160)
9. Crnokrak P, Roff DA, (1999) Inbreeding depression in the wild. Heredity, 83, 260-270. (Pubitemid 29498795)
10. Edmands S, (2007) Between a rock and a hard place: evaluating the relative risks of inbreeding and outbreeding for conservation and management. Molecular Ecology, 16, 463-475. (Pubitemid 46161073)
11. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620. (Pubitemid 40886055)
12. Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587. (Pubitemid 37102217)
13. Festa-Bianchet M, (1989) Individual differences, parasites, and the costs of reproduction for bighorn ewes (Ovis canadensis). Journal of Animal Ecology, 58, 785-795. (Pubitemid 20421145)
14. Festa-Bianchet M, Jorgenson JT, Berube CH, Portier C, Wishart WD, (1997) Body mass and survival of bighorn sheep. Canadian Journal of Zoology-Revue Canadienne De Zoologie, 75, 1372-1379. (Pubitemid 27461830)
15. Fitzpatrick B, Johnson J, Kump DK, et al. (2009) Rapid fixation of non-native alleles revealed by genome-wide SNP analysis of hybrid tiger salamanders. BMC Evolutionary Biology, 9, 176.
16. Fitzpatrick BM, Johnson JR, Kump DK, et al. (2010) Rapid spread of invasive genes into a threatened native species. Proceedings of the National Academy of Sciences of the United States of America, 107, 3606-3610.
17. Forbes SH, Hogg JT, (1999) Assessing population structure at high levels of differentiation: microsatellite comparisons of bighorn sheep and large carnivores. Animal Conservation, 2, 223-233. (Pubitemid 129500969)
18. Frankham R, (2005) Genetics and extinction. Biological Conservation, 126, 131-140. (Pubitemid 41113239)
19. Gaillard JM, Festa-Bianchet M, Delorme D, Jorgenson JT, (2000) Body mass and individual fitness in female ungulates: bigger is not always better. Proceedings of the Royal Society B: Biological Sciences, 267, 471-477. (Pubitemid 30148213)
20. Geraldes A, Ferrand N, Nachman MW, (2006) Contrasting patterns of introgression at X-linked loci across the hybrid zone between subspecies of the European rabbit (Oryctolagus cuniculus). Genetics, 173, 919-933. (Pubitemid 43945907)
21. Gompert Z, Buerkle CA, (2009) A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Molecular Ecology, 18, 1207-1224.
22. Gompert Z, Buerkle CA, (2010) INTROGRESS: a software package for mapping components of isolation in hybrids. Molecular Ecology Resources, 10, 378-384.
23. Gutierrez-Gil B, Pérez J, Álvarez L, et al. (2009) Quantitative trait loci for resistance to trichostrongylid infection in Spanish Churra sheep. Genetics, Selection, Evolution, 41, doi:.
24. Hedrick P, Fredrickson R, (2010) Genetic rescue guidelines with examples from Mexican wolves and Florida panthers. Conservation Genetics, 11, 615-626.
25. Hogg JT, Forbes SH, Steele BM, Luikart G, (2006) Genetic rescue of an insular population of large mammals. Proceedings of the Royal Society B: Biological Sciences, 273, 1491-1499. (Pubitemid 47308737)
26. Hu Z, Fritz ER, Reecy JM, (2007) AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic Acids Research, 35 (suppl 1), D604-D609. (Pubitemid 46056278)
27. Jensen-Seaman MI, Furey TS, Payseur BA, et al. (2004) Comparative recombination rates in the rat, mouse, and human genomes. Genome Research, 14, 528-538. (Pubitemid 38500223)
28. Johnson WE, Onorato DP, Roelke ME, et al. (2010) Genetic restoration of the Florida panther. Science, 329, 1641-1645.
29. Kong A, Gudbjartsson DF, Sainz J, et al. (2002) A high-resolution recombination map of the human genome. Nature Genetics, 31, 241-247.
30. Lexer C, Buerkle CA, Joseph JA, Heinze B, Fay MF, (2006) Admixture in European Populus hybrid zones makes feasible the mapping of loci that contribute to reproductive isolation and trait differences. Heredity, 98, 74-84. (Pubitemid 46173896)
31. Lexer C, Joseph JA, van Loo M, et al. (2010) Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating. Genetics, 186, 699-712.
32. Lynch M, (1991) The genetic interpretation of inbreeding depression and outbreeding depression. Evolution, 45, 622-629.
33. Madsen T, Shine R, Olsson M, Wittzell H, (1999) Restoration of an inbred adder population. Nature, 402, 34-35.
34. Miller JM, Poissant J, Kijas J, Coltman DW, Consortium TISG, (2011) A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep. Molecular Ecology Resources, 11, 314-322.
35. Nolte AW, Gompert Z, Buerkle CA, (2009) Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations. Molecular Ecology, 18, 2615-2627.
36. Opdam P, Wascher D, (2004) Climate change meets habitat fragmentation: linking landscape and biogeographical scale levels in research and conservation. Biological Conservation, 117, 285-297. (Pubitemid 38362123)
37. Payseur BA, Krenz JG, Nachman MW, (2004) Differential patterns of introgression across the X chromosome in a hybrid zone between two species of house mice. Evolution, 58, 2064-2078. (Pubitemid 39348506)
38. Pelletier F, Page KA, Ostiguy T, Festa-Bianchet M, (2005) Fecal counts of lungworm larvae and reproductive effort in bighorn sheep, Ovis canadensis. Oikos, 110, 473-480. (Pubitemid 41296764)
39. Poissant J, Wilson AJ, Festa-Bianchet M, Hogg JT, Coltman DW, (2008) Quantitative genetics and sex-specific selection on sexually dimorphic traits in bighorn sheep. Proceedings of the Royal Society B-Biological Sciences, 275, 623-628. (Pubitemid 351198027)
40. Poissant J, Shafer ABA, Davis CS, et al. (2009) Genome-wide cross-amplification of domestic sheep microsatellites in bighorn sheep and mountain goats. Molecular Ecology Resources, 9, 1121-1126.
41. Poissant J, Hogg JT, Davis CS, et al. (2010) Genetic linkage map of a wild genome: genomic structure, recombination and sexual dimorphism in bighorn sheep. BMC Genomics, 11, doi:.
42. Poissant J, Davis CS, Malenfant R, Hogg JT, Coltman DW, (in press) QTL mapping for sexually dimorphic fitness-related traits in wild bighorn sheep. Heredity, doi:.
43. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. (Pubitemid 30397141)
44. Raadsma HW, Thomson PC, Zenger KR, et al. (2009) Mapping quantitative trait loci (QTL) in sheep. I. A new male framework linkage map and QTL for growth rate and body weight. Genetics, Selection, Evolution, 41, doi:.
45. Tallmon DA, Luikart G, Waples RS, (2004) The alluring simplicity and complex reality of genetic rescue. Trends in Ecology & Evolution, 19, 489-496. (Pubitemid 39151669)
46. Teeter KC, Thibodeau LM, Gompert Z, et al. (2009) The variable genomic architecture of isolation between hybridizing species of house mice. Evolution, 64, 472-485.
47. Zhu X, Luke A, Cooper R, et al. (2005) Admixture mapping for hypertension loci with genome-scan markers. Nature Genetics, 37, 177-181.