메뉴 건너뛰기




Volumn 75, Issue 13, 2012, Pages 4176-4183

SIR: Deterministic protein inference from peptides assigned to MS data

Author keywords

Computational proteomics; Database dependent search; Protein inference

Indexed keywords

PEPTIDE DERIVATIVE;

EID: 84862659627     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.05.010     Document Type: Article
Times cited : (26)

References (15)
  • 1
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii A.I., Keller A., Kolker E., Aebersold R. A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 2003, 75(17):4646-4658.
    • (2003) Anal Chem , vol.75 , Issue.17 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 2
    • 0036104289 scopus 로고    scopus 로고
    • Investigation of the influence of charge derivatization on the fragmentation of multiply protonated peptides
    • Sonsmann G., Romer A., Schomburg D. Investigation of the influence of charge derivatization on the fragmentation of multiply protonated peptides. J Am Soc Mass Spectrom 2002, 13(1):47-58.
    • (2002) J Am Soc Mass Spectrom , vol.13 , Issue.1 , pp. 47-58
    • Sonsmann, G.1    Romer, A.2    Schomburg, D.3
  • 3
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins D.N., Pappin D.J., Creasy D.M., Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20(18):3551-3567.
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 4
    • 0036470450 scopus 로고    scopus 로고
    • What does it mean to identify a protein in proteomics?
    • Rappsilber J., Mann M. What does it mean to identify a protein in proteomics?. Trends Biochem Sci 2002, 27(2):74-78.
    • (2002) Trends Biochem Sci , vol.27 , Issue.2 , pp. 74-78
    • Rappsilber, J.1    Mann, M.2
  • 5
    • 27644555055 scopus 로고    scopus 로고
    • Interpretation of shotgun proteomic data: the protein inference problem
    • Nesvizhskii A.I., Aebersold R. Interpretation of shotgun proteomic data: the protein inference problem. Mol Cell Proteomics 2005, 4(10):1419-1440.
    • (2005) Mol Cell Proteomics , vol.4 , Issue.10 , pp. 1419-1440
    • Nesvizhskii, A.I.1    Aebersold, R.2
  • 6
    • 38349166945 scopus 로고    scopus 로고
    • A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry
    • Shen C., Wang Z., Shankar G., Zhang X., Li L. A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry. Bioinformatics 2008, 24(2):202-208.
    • (2008) Bioinformatics , vol.24 , Issue.2 , pp. 202-208
    • Shen, C.1    Wang, Z.2    Shankar, G.3    Zhang, X.4    Li, L.5
  • 7
    • 77955463487 scopus 로고    scopus 로고
    • Protein and gene model inference based on statistical modeling in k-partite graphs
    • Gerster S., Qeli E., Ahrens C.H., Bühlmann P. Protein and gene model inference based on statistical modeling in k-partite graphs. Proc Natl Acad Sci U S A 2010, 107(27):12101-12106.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.27 , pp. 12101-12106
    • Gerster, S.1    Qeli, E.2    Ahrens, C.H.3    Bühlmann, P.4
  • 8
    • 70349213754 scopus 로고    scopus 로고
    • A Bayesian approach to protein inference problem in shotgun proteomics
    • Li Y.F., Arnold R.J., Li Y., Radivojac P., Sheng Q., Tang H. A Bayesian approach to protein inference problem in shotgun proteomics. J Comput Biol 2009, 16(8):1183-1193.
    • (2009) J Comput Biol , vol.16 , Issue.8 , pp. 1183-1193
    • Li, Y.F.1    Arnold, R.J.2    Li, Y.3    Radivojac, P.4    Sheng, Q.5    Tang, H.6
  • 9
    • 77954502710 scopus 로고    scopus 로고
    • PeptideClassifier for protein inference and targeted quantitative proteomics
    • Qeli E., Ahrens C.H. PeptideClassifier for protein inference and targeted quantitative proteomics. Nat Biotechnol 2010, 28(7):647-650.
    • (2010) Nat Biotechnol , vol.28 , Issue.7 , pp. 647-650
    • Qeli, E.1    Ahrens, C.H.2
  • 12
    • 33746298724 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of post-translational modifications of human histones
    • Beck H.C., Nielsen E.C., Matthiesen R., Jensen L.H., Sehested M., Finn P., et al. Quantitative proteomic analysis of post-translational modifications of human histones. Mol Cell Proteomics 2006, 5(7):1314-1325.
    • (2006) Mol Cell Proteomics , vol.5 , Issue.7 , pp. 1314-1325
    • Beck, H.C.1    Nielsen, E.C.2    Matthiesen, R.3    Jensen, L.H.4    Sehested, M.5    Finn, P.6
  • 13
    • 29144535689 scopus 로고    scopus 로고
    • VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins
    • Matthiesen R., Trelle M.B., Højrup P., Bunkenborg J., Jensen O.N. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins. J Proteome Res 2005, 4(6):2338-2347.
    • (2005) J Proteome Res , vol.4 , Issue.6 , pp. 2338-2347
    • Matthiesen, R.1    Trelle, M.B.2    Højrup, P.3    Bunkenborg, J.4    Jensen, O.N.5
  • 14
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48(3):443-453.
    • (1970) J Mol Biol , vol.48 , Issue.3 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 15


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.