메뉴 건너뛰기




Volumn 3, Issue 3, 2012, Pages 115-118

Multiple active centers of multi-subunit RNA polymerases

Author keywords

Active center; Hydrolysis; RNA polymerase; Transcription; Transcription factor

Indexed keywords

DNA DIRECTED RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE III; MAGNESIUM ION; MICROCIN J25; PHOSPHODIESTERASE; RNA POLYMERASE; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DKSA; TRANSCRIPTION FACTOR GFH1; TRANSCRIPTION FACTOR GRE; TRANSCRIPTION FACTOR GREA; TRANSCRIPTION FACTOR GREB; TRANSCRIPTION FACTOR RNK; TRANSCRIPTION FACTOR TRAR; UNCLASSIFIED DRUG;

EID: 84862643594     PISSN: 21541264     EISSN: 21541272     Source Type: Journal    
DOI: 10.4161/trns.19887     Document Type: Article
Times cited : (11)

References (28)
  • 1
    • 0032518374 scopus 로고    scopus 로고
    • A mechanism for all polymerases
    • PMID:9440683
    • Steitz TA. A mechanism for all polymerases. Nature 1998; 391:231-232. PMID:9440683; http://dx.doi.org/10.1038/34542.
    • (1998) Nature , vol.391 , pp. 231-232
    • Steitz, T.A.1
  • 2
    • 33746634704 scopus 로고    scopus 로고
    • Transcript-assisted transcriptional proofreading
    • PMID:16873663
    • Zenkin N, Yuzenkova Y, Severinov K. Transcript-assisted transcriptional proofreading. Science 2006; 313:518-520. PMID:16873663; http://dx.doi.org/10.1126/science.1127422.
    • (2006) Science , vol.313 , pp. 518-520
    • Zenkin, N.1    Yuzenkova, Y.2    Severinov, K.3
  • 3
    • 0027536870 scopus 로고
    • Transcript cleavage factors from E. Coli
    • PMID:8431948
    • Borukhov S, Sagitov V, Goldfarb A. Transcript cleavage factors from E. coli. Cell 1993; 72:459-466. PMID:8431948; http://dx.doi.org/10.1016/0092-8674(93)90121-6.
    • (1993) Cell , vol.72 , pp. 459-466
    • Borukhov, S.1    Sagitov, V.2    Goldfarb, A.3
  • 4
    • 24044497229 scopus 로고    scopus 로고
    • Structural basis of transcription inhibition by antibiotic streptolydigin
    • PMID:16167380
    • Temiakov D, Zenkin N, Vassylyeva MN, Perederina A, Tahirov TH, Kashkina E, et al. Structural basis of transcription inhibition by antibiotic streptolydigin. Mol Cell 2005; 19:655-666. PMID:16167380; http://dx.doi.org/10.1016/j.molcel.2005.07.020.
    • (2005) Mol Cell , vol.19 , pp. 655-666
    • Temiakov, D.1    Zenkin, N.2    Vassylyeva, M.N.3    Perederina, A.4    Tahirov, T.H.5    Kashkina, E.6
  • 5
    • 34447513771 scopus 로고    scopus 로고
    • Structural basis for substrate loading in bacterial RNA polymerase
    • PMID:17581591
    • Vassylyev DG, Vassylyeva MN, Zhang J, Palangat M, Artsimovitch I, Landick R. Structural basis for substrate loading in bacterial RNA polymerase. Nature 2007; 448:163-168. PMID:17581591; http://dx.doi.org/10.1038/nature05931.
    • (2007) Nature , vol.448 , pp. 163-168
    • Vassylyev, D.G.1    Vassylyeva, M.N.2    Zhang, J.3    Palangat, M.4    Artsimovitch, I.5    Landick, R.6
  • 6
    • 33751235874 scopus 로고    scopus 로고
    • Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
    • PMID:17129781
    • Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell 2006; 127:941-954. PMID:17129781; http://dx.doi.org/10.1016/j.cell.2006.11.023.
    • (2006) Cell , vol.127 , pp. 941-954
    • Wang, D.1    Bushnell, D.A.2    Westover, K.D.3    Kaplan, C.D.4    Kornberg, R.D.5
  • 7
    • 77449093660 scopus 로고    scopus 로고
    • Role of the RNA polymerase trigger loop in catalysis and pausing
    • PMID:19966797
    • Zhang J, Palangat M, Landick R. Role of the RNA polymerase trigger loop in catalysis and pausing. Nat Struct Mol Biol 2010; 17:99-104. PMID:19966797; http://dx.doi.org/10.1038/nsmb.1732.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 99-104
    • Zhang, J.1    Palangat, M.2    Landick, R.3
  • 9
    • 77957678214 scopus 로고    scopus 로고
    • RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription
    • PMID:20798057
    • Huang X, Wang D, Weiss DR, Bushnell DA, Kornberg RD, Levitt M. RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proc Natl Acad Sci USA 2010; 107:15745-15750. PMID:20798057; http://dx.doi.org/10.1073/pnas.1009898107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 15745-15750
    • Huang, X.1    Wang, D.2    Weiss, D.R.3    Bushnell, D.A.4    Kornberg, R.D.5    Levitt, M.6
  • 10
    • 77954655593 scopus 로고    scopus 로고
    • Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis
    • PMID:20534498
    • Yuzenkova Y, Zenkin N. Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. Proc Natl Acad Sci USA 2010; 107:10878-10883. PMID:20534498; http://dx.doi.org/10.1073/pnas.0914424107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 10878-10883
    • Yuzenkova, Y.1    Zenkin, N.2
  • 11
    • 78650310283 scopus 로고    scopus 로고
    • Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
    • PMID:21124318
    • Tagami S, Sekine S, Kumarevel T, Hino N, Murayama Y, Kamegamori S, et al. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein. Nature 2010; 468:978-982; PMID:21124318; http://dx.doi.org/10.1038/nature09573.
    • (2010) Nature , vol.468 , pp. 978-982
    • Tagami, S.1    Sekine, S.2    Kumarevel, T.3    Hino, N.4    Murayama, Y.5    Kamegamori, S.6
  • 12
    • 30344459408 scopus 로고    scopus 로고
    • Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage
    • PMID:16337964
    • Lamour V, Hogan BP, Erie DA, Darst SA. Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage. J Mol Biol 2006; 356:179-188; PMID:16337964; http://dx.doi.org/10.1016/j.jmb.2005.10.083.
    • (2006) J Mol Biol , vol.356 , pp. 179-188
    • Lamour, V.1    Hogan, B.P.2    Erie, D.A.3    Darst, S.A.4
  • 13
    • 33646773242 scopus 로고    scopus 로고
    • PH-dependent conformational switch activates the inhibitor of transcription elongation
    • PMID:16628221
    • Laptenko O, Kim SS, Lee J, Starodubtseva M, Cava F, Berenguer J, et al. pH-dependent conformational switch activates the inhibitor of transcription elongation. EMBO J 2006; 25:2131-2141; PMID:16628221; http://dx.doi.org/10.1038/sj.emboj.7601094.
    • (2006) EMBO J , vol.25 , pp. 2131-2141
    • Laptenko, O.1    Kim, S.S.2    Lee, J.3    Starodubtseva, M.4    Cava, F.5    Berenguer, J.6
  • 14
    • 79961184265 scopus 로고    scopus 로고
    • Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
    • PMID:21266474
    • Roghanian M, Yuzenkova Y, Zenkin N. Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre. Nucleic Acids Res 2011; 39:4352-4359; PMID:21266474; http://dx.doi.org/10.1093/nar/gkq1359.
    • (2011) Nucleic Acids Res , vol.39 , pp. 4352-4359
    • Roghanian, M.1    Yuzenkova, Y.2    Zenkin, N.3
  • 15
    • 44449103640 scopus 로고    scopus 로고
    • The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin
    • PMID:18538653
    • Kaplan CD, Larsson KM, Kornberg RD. The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. Mol Cell 2008; 30:547-556; PMID:18538653; http://dx.doi.org/10.1016/j.molcel.2008.04.023.
    • (2008) Mol Cell , vol.30 , pp. 547-556
    • Kaplan, C.D.1    Larsson, K.M.2    Kornberg, R.D.3
  • 16
    • 79952440464 scopus 로고    scopus 로고
    • Structural basis of RNA polymerase II backtracking, arrest and reactivation
    • PMID:21346759
    • Cheung AC, Cramer P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 2011; 471:249-253; PMID:21346759; http://dx.doi.org/10.1038/nature09785.
    • (2011) Nature , vol.471 , pp. 249-253
    • Cheung, A.C.1    Cramer, P.2
  • 17
    • 49249119067 scopus 로고    scopus 로고
    • Identification and characterization of two trypanosome TFIIS proteins exhibiting particular domain architectures and differential nuclear localizations
    • PMID:18627464
    • Uzureau P, Daniels JP, Walgraffe D, Wickstead B, Pays E, Gull K, et al. Identification and characterization of two trypanosome TFIIS proteins exhibiting particular domain architectures and differential nuclear localizations. Mol Microbiol 2008; 69:1121-1136; PMID:18627464.
    • (2008) Mol Microbiol , vol.69 , pp. 1121-1136
    • Uzureau, P.1    Daniels, J.P.2    Walgraffe, D.3    Wickstead, B.4    Pays, E.5    Gull, K.6
  • 18
    • 47549116548 scopus 로고    scopus 로고
    • Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription
    • PMID:18628399
    • Ghavi-Helm Y, Michaut M, Acker J, Aude JC, Thuriaux P, Werner M, et al. Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription. Genes Dev 2008; 22:1934-1947; PMID:18628399; http://dx.doi.org/10.1101/gad.471908.
    • (2008) Genes Dev , vol.22 , pp. 1934-1947
    • Ghavi-Helm, Y.1    Michaut, M.2    Acker, J.3    Aude, J.C.4    Thuriaux, P.5    Werner, M.6
  • 19
    • 2042475439 scopus 로고    scopus 로고
    • Structural basis for transcription regulation by alarmone ppGpp
    • PMID:15109491
    • Artsimovitch I, Patlan V, Sekine S, Vassylyeva MN, Hosaka T, Ochi K, et al. Structural basis for transcription regulation by alarmone ppGpp. Cell 2004; 117:299-310; PMID:15109491; http://dx.doi.org/10.1016/S0092-8674(04)00401-5.
    • (2004) Cell , vol.117 , pp. 299-310
    • Artsimovitch, I.1    Patlan, V.2    Sekine, S.3    Vassylyeva, M.N.4    Hosaka, T.5    Ochi, K.6
  • 21
    • 2942635581 scopus 로고    scopus 로고
    • Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25
    • PMID:15200953
    • Adelman K, Yuzenkova J, La Porta A, Zenkin N, Lee J, Lis JT, et al. Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Mol Cell 2004; 14:753-762; PMID:15200953; http://dx.doi.org/10.1016/j.molcel.2004.05.017.
    • (2004) Mol Cell , vol.14 , pp. 753-762
    • Adelman, K.1    Yuzenkova, J.2    la Porta, A.3    Zenkin, N.4    Lee, J.5    Lis, J.T.6
  • 22
    • 33846604629 scopus 로고    scopus 로고
    • Effects of DksA, GreA and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase
    • PMID:17207814
    • Rutherford ST, Lemke JJ, Vrentas CE, Gaal T, Ross W, Gourse RL. Effects of DksA, GreA and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase. J Mol Biol 2007; 366:1243-1257; PMID:17207814; http://dx.doi.org/10.1016/j.jmb.2006.12.013.
    • (2007) J Mol Biol , vol.366 , pp. 1243-1257
    • Rutherford, S.T.1    Lemke, J.J.2    Vrentas, C.E.3    Gaal, T.4    Ross, W.5    Gourse, R.L.6
  • 23
    • 77952527102 scopus 로고    scopus 로고
    • The transcription factor DksA prevents conflicts between DNA replication and transcription machinery
    • PMID:20478253
    • Tehranchi AK, Blankschien MD, Zhang Y, Halliday JA, Srivatsan A, Peng J, et al. The transcription factor DksA prevents conflicts between DNA replication and transcription machinery. Cell 2010; 141:595-605; PMID:20478253; http://dx.doi.org/10.1016/j.cell.2010.03.036.
    • (2010) Cell , vol.141 , pp. 595-605
    • Tehranchi, A.K.1    Blankschien, M.D.2    Zhang, Y.3    Halliday, J.A.4    Srivatsan, A.5    Peng, J.6
  • 24
    • 84862776860 scopus 로고    scopus 로고
    • Role of the Coiled-Coil Tip of Escherichia coli DksA in Promoter Control
    • PMID:22200485
    • Lee JH, Lennon CW, Ross W, Gourse RL. Role of the Coiled-Coil Tip of Escherichia coli DksA in Promoter Control. J Mol Biol 2012; 416:503-511; PMID:22200485.
    • (2012) J Mol Biol , vol.416 , pp. 503-511
    • Lee, J.H.1    Lennon, C.W.2    Ross, W.3    Gourse, R.L.4
  • 25
    • 59249092262 scopus 로고    scopus 로고
    • TraR, a homolog of a RNAP secondary channel interactor, modulates transcription
    • PMID:19148274
    • Blankschien MD, Potrykus K, Grace E, Choudhary A, Vinella D, Cashel M, et al. TraR, a homolog of a RNAP secondary channel interactor, modulates transcription. PLoS Genet 2009; 5:1000345; PMID:19148274; http://dx.doi.org/10.1371/journal.pgen.1000345.
    • (2009) PLoS Genet , vol.5 , pp. 1000345
    • Blankschien, M.D.1    Potrykus, K.2    Grace, E.3    Choudhary, A.4    Vinella, D.5    Cashel, M.6
  • 26
    • 84860380221 scopus 로고    scopus 로고
    • Transcription initiation factor DksA has diverse effects on RNA chain elongation
    • PMID:22210857
    • Furman R, Sevostyanova A, Artsimovitch I. Transcription initiation factor DksA has diverse effects on RNA chain elongation. Nucleic Acids Res 2011; PMID:22210857; http://dx.doi.org/10.1093/nar/gkr1273.
    • (2011) Nucleic Acids Res
    • Furman, R.1    Sevostyanova, A.2    Artsimovitch, I.3
  • 27
    • 1842533240 scopus 로고    scopus 로고
    • The arginine finger of bacteriophage T7 gene 4 helicase: Role in energy coupling
    • PMID:15070725
    • Crampton DJ, Guo S, Johnson DE, Richardson CC. The arginine finger of bacteriophage T7 gene 4 helicase: role in energy coupling. Proc Natl Acad Sci USA 2004; 101:4373-4378; PMID:15070725; http://dx.doi.org/10.1073/pnas.0400968101.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4373-4378
    • Crampton, D.J.1    Guo, S.2    Johnson, D.E.3    Richardson, C.C.4
  • 28
    • 77950535099 scopus 로고    scopus 로고
    • Unravelling the mechanism of dual-specificity GAPs
    • PMID:20186121
    • Sot B, Kötting C, Deaconescu D, Suveyzdis Y, Gerwert K, Wittinghofer A. Unravelling the mechanism of dual-specificity GAPs. EMBO J 2010; 29:1205-1214; PMID:20186121; http://dx.doi.org/10.1038/emboj.2010.20.
    • (2010) EMBO J , vol.29 , pp. 1205-1214
    • Sot, B.1    Kötting, C.2    Deaconescu, D.3    Suveyzdis, Y.4    Gerwert, K.5    Wittinghofer, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.