A two-stage model for lipid modulation of the activity of integral membrane proteins

PLoS ONE

Volumn 7, Issue 6, 2012, Pages

  Dodes Traian, Martín M ^a   Cattoni, Diego I ^a,b   Levi, Valeria ^a   González Flecha, F Luis ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b CENTRE DE BIOCHIMIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

8 ANILINO 1 NAPHTHALENESULFONIC ACID; ADENOSINE TRIPHOSPHATASE (CALCIUM); AMPHOPHILE; MEMBRANE PROTEIN; PHOSPHOLIPID;

ADSORPTION KINETICS; ARTICLE; BINDING AFFINITY; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME STRUCTURE; FLUORESCENCE SPECTROSCOPY; HUMAN; HUMAN CELL; HYDROPHOBICITY; MICELLE; MOLECULAR MECHANICS; MOLECULAR MODEL; PROTEIN DOMAIN; PROTEIN LIPID INTERACTION; SIGNAL TRANSDUCTION;

ALGORITHMS; ENZYME ACTIVATION; HUMANS; MEMBRANE PROTEINS; MICELLES; MODELS, MOLECULAR; PHOSPHOLIPIDS; PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASES;

EID: 84862577500     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0039255     Document Type: Article

References (47)

1. Singer SJ, Nicolson GL, (1972) The fluid mosaic model of the structure of cell membranes. Science 175: 720-731.
2. Phillips R, Ursell T, Wiggins P, Sens P, (2009) Emerging roles for lipids in shaping membrane-protein function. Nature 459: 379-385.
3. Lee AG, (2011) Biological membranes: the importance of molecular detail. Trends in Biochemical Sciences 36: 493-500.
4. Adamian L, Naveed H, Liang J, (2011) Lipid-binding surfaces of membrane proteins: Evidence from evolutionary and structural analysis. Biochim Biophys Acta 1808: 1092-1102.
5. Hunte C, Richers S, (2008) Lipids and membrane protein structures. Curr Op Struct Biol 18: 406-411.
6. Jost PC, Griffith OH, Capaldi RA, Vanderkooi G, (1973) Evidence for boundary lipid in membranes. Proc Nat Acad Sci USA 70: 480-484.
7. Marsh D, (2008) Electron spin resonance in membrane research: Protein-lipid interactions. Methods 46: 83-96.
8. Jost PC, Griffith OH, (1980) The lipid-protein interface in biological membranes. Ann N Y Acad Sci 348: 391-407.
9. Lee AG, (2004) How lipids affect the activities of integral membrane proteins. Biochim Biophys Acta 1666: 62-87.
10. Strehler EE, James P, Fischer R, Heim R, Vorherr T, et al. (1990) Peptide sequence analysis and molecular cloning reveal two calcium pump isoforms in the human erythrocyte membrane. J Biol Chem 265: 2835-2842.
11. 2++ ATPase of animal cells: structure, function and regulation. Arch Biochem Biophys 476: 65-74.
12. Castello PR, Caride AJ, González Flecha FL, Fernández HN, Rossi JP, et al. (1994) Identification of transmembrane domains of the red cell calcium pump with a new photoactivatable phospholipidic probe. Biochem Biophys Res Commun 201: 194-200.
13. Castello PR, González Flecha FL, Caride AJ, Fernández HN, Delfino JM, et al. (1997) The membrane topology of the amino-terminal domain of the red cell calcium pump. Protein Sci 6: 1708-1717.
14. 2++-ATPase in ghost membranes and after purification. Mol Cell Biochem 99: 75-81.
15. Carafoli E, (1994) Biogenesis: plasma membrane calcium ATPase: 15 years of work on the purified enzyme. FASEB J 8: 993-1002.
16. Levi V, Rossi JP, Echarte MM, Castello PR, González Flecha FL, (2000) Thermal stability of the plasma membrane calcium pump. Quantitative analysis of its dependence on lipid-protein interactions. J Membr Biol 173: 215-225.
17. 2++-ATPase activity. Cell Calcium 39: 209-216.
18. 2+)-activated ATPase of erythrocyte membranes. Arch Biochem Biophys 179: 578-583.
19. 2++- ATPase. J Biol Chem 256: 8588-8592.
20. 2++-ATPase by ATP and acidic phospholipids. J Biol Chem 278: 22265-22271.
21. Garber Cohen IP, Castello PR, González Flecha FL, (2010) Ice-induced partial unfolding and aggregation of an integral membrane protein. Biochim Biophys Acta 1798: 2040-2047.
22. Levi V, Rossi JP, Castello PR, González Flecha FL, (2002) Structural significance of the plasma membrane calcium pump oligomerization. Biophys J 82: 437-446.
23. Tanford C, (1980) The Hydrophobic Effect: John Wiley & Sons. 234 p.
24. Ladokhin AS, Fernández-Vidal M, White SH, (2010) CD spectroscopy of peptides and proteins bound to large unilamellar vesicles. J Membr Biol 236: 247-253.
25. Cattoni DI, González Flecha FL, Argüello JM, (2008) Thermal stability of CopA, a polytopic membrane protein from the hyperthermophile Archaeoglobus fulgidus. Arch Biochem Biophys 471: 198-206.
26. Roman EA, Santos J, González Flecha FL, (2012) The use of circular dichroism methods to monitor unfolding transitions in peptides, globular and membrane proteins. In: Rodgers DS, editors. pp. 217-254 editor. Circular Dichroism: Theory and Spectroscopy. New York: Nova Publishers.
27. Yau WM, Wimley WC, Gawrisch K, White SH, (1998) The preference of tryptophan for membrane interfaces. Biochemistry 37: 14713-14718.
28. Levi V, Rossi JPFC, Castello PR, González Flecha FL, (2000) Oligomerization of the plasma membrane calcium pump involves two regions with different thermal stability. FEBS Letters 483: 99-103.
29. Kozachkov L, Padan E, (2011) Site-directed tryptophan fluorescence reveals two essential conformational changes in the Na+/H+ antiporter NhaA. Proc Nat Acad Sci USA 108: 15769-15774.
30. Cattoni DI, Kaufman SB, González Flecha FL, (2009) Kinetics and thermodynamics of the interaction of 1-anilino-naphthalene-8-sulfonate with proteins. Biochim Biophys Acta 1794: 1700-1708.
31. Daniel E, Weber G, (1966) Cooperative effects in binding by bovine serum albumin. I. The binding of 1-anilino-8-naphthalenesulfonate. Fluorimetric titrations. Biochemistry 5: 1893-1900.
32. Roman EA, Argüello JM, González Flecha FL, (2010) Reversible unfolding of a thermophilic membrane protein in phospholipid/detergent mixed micelles. J Mol Biol 397: 550-559.
33. Marsh D, (2008) Protein modulation of lipids, and vice-versa, in membranes. Biochim Biophys Acta 1778: 1545-1575.
34. Atkins P, de Paula J, (2006) Physical Chemistry. New York: WH Freeman and Company.
35. Levi V, Rossi JP, Castello PR, González Flecha FL, (2003) Quantitative analysis of membrane protein-amphiphile interactions using resonance energy transfer. Anal Biochem 317: 171-179.
36. Loura LM, Prieto M, Fernandes F, (2010) Quantification of protein-lipid selectivity using FRET. Eur Biophys J 39: 565-578.
37. Reed LJ, Berkson J, (1928) The application of the logistic function to experimental data. J Phys Chem 33: 760-779.
38. O'Keeffe AH, East JM, Lee AG, (2000) Selectivity in lipid binding to the bacterial outer membrane protein OmpF. Biophys J 79: 2066-2074.
39. Sanders CR, Mittendorf KF, (2011) Tolerance to changes in membrane lipid composition as a selected trait of membrane proteins. Biochemistry 50: 7858-7867.
40. Walsh JP, Bell RM, (1986) sn-1,2-Diacylglycerol kinase of Escherichia coli. Structural and kinetic analysis of the lipid cofactor dependence. J Biol Chem 261: 15062-15069.
41. González Flecha FL, Castello PR, Gagliardino JJ, Rossi JP, (1999) Molecular characterization of the glycated plasma membrane calcium pump. J Membr Biol 171: 25-34.
42. Levi V, Villamil Giraldo AM, Castello PR, Rossi JP, González Flecha FL, (2008) Effects of phosphatidylethanolamine glycation on lipid-protein interactions and membrane protein thermal stability. Biochem J 416: 145-152.
43. Schägger H, (2006) Tricine-SDS-PAGE. Nat Protoc 1: 16-22.
44. Strop P, Brunger AT, (2005) Refractive index-based determination of detergent concentration and its application to the study of membrane proteins. Protein Sci 14: 2207-2211.
45. Lanzetta PA, Alvarez LJ, Reinach PS, Candia OA, (1979) An improved assay for nanomole amounts of inorganic phosphate. Anal Biochem 100: 95-97.
46. Tummino PJ, Gafni A, (1993) Determination of the aggregation number of detergent micelles using steady-state fluorescence quenching. Biophys J 64: 1580-1587.
47. Seber GAF, C.J W, (1989) Nonlinear Regression. New York: John Wiley and Sons.