Pulsed ESR dipolar spectroscopy for distance measurements in immobilized spin labeled proteins in liquid solution

Journal of the American Chemical Society

Volumn 134, Issue 24, 2012, Pages 9950-9952

  Yang, Zhongyu ^a   Liu, Yangping ^b   Borbat, Peter ^c   Zweier, Jay L ^b   Freed, Jack H ^c   Hubbell, Wayne L ^a  

^a JULES STEIN EYE INSTITUTE   (United States)

^b OHIO STATE UNIVERSITY   (United States)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYOGENIC TEMPERATURES; CYSTEINE RESIDUES; DIPOLAR INTERACTION; DISTANCE DISTRIBUTIONS; DISULFIDE LINKAGES; DOUBLE QUANTUM COHERENCES; ELECTRON-SPIN RELAXATION; FROZEN SOLUTIONS; INTERSPIN DISTANCES; LIQUID SOLUTION; PULSED ELECTRON; PULSED ESR; SITE-DIRECTED SPIN LABELING; SOLID SUPPORTS; SPIN LABEL; SPIN-LABELED PROTEINS; T4 LYSOZYME;

AMINO ACIDS; GEL PERMEATION CHROMATOGRAPHY; LIQUIDS; PARAMAGNETIC RESONANCE; QUANTUM THEORY;

ELECTRON SPIN RESONANCE SPECTROSCOPY;

AMINO ACID; CYSTEINE; DISULFIDE; LYSOZYME; SEPHAROSE; TRIARYLMETHYL; UNCLASSIFIED DRUG;

AMINO ACID SYNTHESIS; ARTICLE; DISULFIDE BOND; ELECTRON SPIN RESONANCE; MOLECULAR INTERACTION; PROTEIN IMMOBILIZATION; PULSED ELECTRON SPIN RESONANCE DIPOLAR SPECTROSCOPY; SPIN LABELING;

BACTERIOPHAGE T4; CYSTEINE; ELECTRON SPIN RESONANCE SPECTROSCOPY; IMMOBILIZED PROTEINS; MODELS, MOLECULAR; MURAMIDASE; SOLUTIONS; SPIN LABELS; WATER;

EID: 84862542770     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja303791p     Document Type: Article

References (36)

1. Borbat, P. P.; Freed, J. H. Methods Enzymol. 2007, 423, 52
2. Milov, A. D.; Ponomarev, A. B.; Tsvetkov, Y. D. Chem. Phys. Lett. 1984, 110, 67
3. Pannier, M.; Veit, S.; Godt, A.; Jeschke, G.; Spiess, H. W. J. Magn. Reson. 2000, 142, 331
4. Saxena, S.; Freed, J. J. Chem. Phys. 1997, 107, 1317
5. Borbat, P. P.; Mchaourab, H. S.; Freed, J. H. J. Am. Chem. Soc. 2002, 124, 5304
6. Chiang, Y.-W.; Borbat, P.; Freed, J. H. J. Magn. Reson. 2005, 172, 279
7. Todd, A. P.; Cong, J.; Levinthal, F.; Levinthal, C.; Hubbell, W. L. Proteins: Struct., Funct., Bioinf. 1989, 6, 294
8. Fleissner, M. R.; Brustad, E. M.; Kálai, T.; Altenbach, C.; Cascio, D.; Peters, F. B.; Hideg, K.; Peuker, S.; Schultz, P. G.; Hubbell, W. L. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 21637
9. Becker, J.; Saxena, S. Chem. Phys. Lett. 2005, 414, 248
10. Raitsimring, A. M.; Gunanathan, C.; Potapov, A.; Efremenko, I.; Martin, J. M. L.; Milstein, D.; Goldfarb, D. J. Am. Chem. Soc. 2007, 129, 14138
11. Roessler, M. M.; King, M. S.; Robinson, A. J.; Armstrong, F. A.; Harmer, J.; Hirst, J. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 1930
12. Yang, Z.; Kurpiewski, M. R.; Ji, M.; Townsend, J. E.; Mehta, P.; Jen-Jacobson, L.; Saxena, S. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, E993
13. Altenbach, C.; Kusnetzow, A. K.; Ernst, O. P.; Hofmann, K. P.; Hubbell, W. L. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 7439
14. Joseph, B.; Jeschke, G.; Goetz, B. A.; Locher, K. P.; Bordignon, E. J. Biol. Chem. 2011, 286, 41008
15. Nicklisch, S. C. T.; Wunnicke, D.; Borovykh, I. V.; Morbach, S.; Klare, J. P.; Steinhoff, H. J.; Krämer, R. Biochim. Biophys. Acta, Biomembr. 2011, 1818, 359
16. Feldmann, E. A.; Ni, S.; Sahu, I. D.; Mishler, C. H.; Risser, D. D.; Murakami, J. L.; Tom, S. K.; McCarrick, R. M.; Lorigan, G. A.; Tolbert, B. S.; Callahan, S. M.; Kennedy, M. A. Biochemistry 2011, 50, 9212
17. Kuo, W.; Herrick, D. Z.; Cafiso, D. S. Biochemistry 2011, 50, 2633
18. Swanson, M. A.; Kathirvelu, V.; Majtan, T.; Frerman, F. E.; Eaton, G. R.; Eaton, S. S. Protein Sci. 2011, 20, 610
19. Smirnova, I.; Kasho, V.; Kaback, H. R. Biochemistry 2011, 50, 9684
20. Georgieva, E. R.; Ramlall, T. F.; Borbat, P. P.; Freed, J. H.; Eliezer, D. J. Biol. Chem. 2010, 285, 28261
21. Bhatnagar, J.; Borbat, P. P.; Pollard, A. M.; Bilwes, A. M.; Freed, J. H.; Crane, B. R. Biochemistry 2010, 49, 3824
22. Stone, K. M.; Townsend, J. E.; Sarver, J.; Sapienza, P. J.; Saxena, S.; Jen-Jacobson, L. Angew. Chem., Int. Ed. 2008, 47, 1
23. Sen, K. I.; Logan, T. M.; Fajer, P. G. Biochemistry 2007, 46, 11639
24. Banham, J. E.; Timmel, C. R.; Abbott, R. J. M.; Lea, S. M.; Jeschke, G. Angew. Chem., Int. Ed. 2006, 45, 1058
25. Van Eps, N.; Preininger, A. M.; Alexander, N.; Kaya, A. I.; Meier, S.; Meiler, J.; Hamm, H. E.; Hubbell, W. L. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 9420
26. Jao, C. C.; Hegde, B. G.; Gallop, J. L.; Hegde, P. B.; McMahon, H. T.; Haworth, I. S.; Langen, R. J. Biol. Chem. 2010, 285, 20164
27. López, C. J.; Fleissner, M. R.; Guo, Z.; Kusnetzow, A. K.; Hubbell, W. L. Protein Sci. 2009, 18, 1637
28. Georgieva, E. R.; Roy, A. S.; Grigoryants, V. M.; Borbat, P. P.; Earle, K. A.; Scholes, C. P.; Freed, J. H. J. Magn. Reson. 2012, 216, 69
29. Dhimitruka, I.; Velayutham, M.; Bobko, A. A.; Khramtsov, V. V.; Villamena, F. A.; Hadad, C. M.; Zweier, J. L. Bioorg. Med. Chem. Lett. 2007, 17, 6801
30. Liu, Y.; Villamena, F. A.; Sun, J.; Xu, Y.; Dhimitruka, I.; Zweier, J. L. J. Org. Chem. 2008, 73, 1490
31. Owenius, R.; Eaton, G. R.; Eaton, S. S. J. Magn. Reson. 2005, 172, 168
32. Fielding, A.; Carl, P.; Eaton, G.; Eaton, S. Appl. Magn. Reson. 2005, 28, 231
33. Grassetti, D. R.; Murray, J. F., Jr. Arch. Biochem. Biophys. 1967, 119, 41
34. Langen, R.; Cai, K.; Altenbach, C.; Khorana, H. G.; Hubbell, W. L. Biochemistry 1999, 38, 7918
35. Riplinger, C.; Kao, J. P. Y.; Rosen, G. M.; Kathirvelu, V.; Eaton, G. R.; Eaton, S. S.; Kutateladze, A.; Neese, F. J. Am. Chem. Soc. 2009, 131, 10092
36. Seo, M.-H.; Han, J.; Jin, Z.; Lee, D.; Park, H.-S.; Kim, H.-S. Anal. Chem. 2011, 83, 2841