Proper regeneration from in vitro cultured Arabidopsis thaliana requires the microRNA-directed action of an auxin response factor

Plant Journal

Volumn 71, Issue 1, 2012, Pages 14-22

  Qiao, Meng ^a   Zhao, Zhongjuan ^a   Song, Yuguang ^a   Liu, Zhenhua ^a   Cao, Lingxue ^a   Yu, Yanchong ^a   Li, Shuo ^a   Xiang, Fengning ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

Arabidopsis thaliana; ARF10; in vitro culture; miR160; miRNA; shoot regeneration

Indexed keywords

ARABIDOPSIS THALIANA; ARF10; IN-VITRO; MIR160; MIRNA; SHOOT REGENERATION;

CELL CULTURE; GENE EXPRESSION;

PLANTS (BOTANY);

ARABIDOPSIS PROTEIN; ARF10 PROTEIN, ARABIDOPSIS; INDOLEACETIC ACID DERIVATIVE; MICRORNA; PLANT RNA; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLANT; REGENERATION; TISSUE CULTURE TECHNIQUE; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT SHOOTS; PLANTS, GENETICALLY MODIFIED; REGENERATION; RNA, PLANT; TISSUE CULTURE TECHNIQUES; TRANSCRIPTION FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84862533871     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2012.04944.x     Document Type: Article

References (37)

1. Allen, R.S., Li, J., Stahle, M.I., Dubroué, A., Gubler, F., and, Millar, A.A., (2007) Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proc. Natl Acad. Sci. USA, 104, 16371-16376. (Pubitemid 350099411)
2. Bäurle, I., and, Laux, T., (2005) Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell, 17, 2271-2280. (Pubitemid 41672946)
3. Che, P., Lall, S., Nettleton, D., and, Howell, S.H., (2006) Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol. 141, 620-637. (Pubitemid 43974556)
4. Chen, X., (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303, 2022-2025. (Pubitemid 38393278)
5. Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
6. Cooper, B., Clarke, J.D., Budworth, P., et al. (2003) A network of rice genes associated with stress response and seed development. Proc. Natl Acad. Sci. USA, 100, 4945-4950. (Pubitemid 36457833)
7. Daimon, Y., Takabe, K., and, Tasaka, M., (2003) The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli. Plant Cell Physiol. 44, 113-121. (Pubitemid 36280705)
8. Gamborg, O.J., Miller, R.A., and, Ojima, K., (1968) Nutrient requirement of suspension cultures of soybean root cells. Exp. Cell Res. 50, 151-158.
9. Green, K.A., Prigge, M.J., Katzman, R.B., and, Clark, S.E., (2005) CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant cell, 17, 691-704. (Pubitemid 43138214)
10. Gross-Hardt, R., and, Laux, T., (2003) Stem cell regulation in the shoot meristem. J. Cell Sci. 116, 1659-1666. (Pubitemid 36582153)
11. Hibara, K., Takada, S., and, Tasaka, M., (2003) CUC1 gene activates the expression of SAM-related genes to induce adventitious shoot formation. Plant J. 36, 687-696. (Pubitemid 37496495)
12. Howell, S.H., Lall, S., and, Che, P., (2003) Cytokinin and shoot development. Trend Plant Sci. 8, 453-459.
13. Jones-Rhoades, M.W., Bartel, D.P., and, Bartel, B., (2006) MicroRNAs and their regulatory roles in plants. Annu. Rev. Plant Biol. 57, 19-53. (Pubitemid 44061017)
14. Juarez, M.T., Kul, J.S., Thomas, J., Heller, B.A., and, Timmermans, M.C.P., (2004) microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature, 428, 84-88. (Pubitemid 38332362)
15. Jung, J.H., and, Park, C.M., (2007) MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta, 225, 1327-1338.
16. Kim, J., Jung, J.H., Reyes, J.L., et al. (2005) microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J. 42, 84-94.
17. Laufs, P., Peaucelle, A., Morin, H., and, Traas, J., (2004) MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development, 131, 4311-4322. (Pubitemid 39276198)
18. Laux, T., Mayer, K.F., Berger, J., and, Jürgens, G., (1996) The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development, 122, 87-96. (Pubitemid 26038421)
19. Liu, P.P., Montgomery, T.A., Fahlgren, N., Kasschau, K.D., Nonogaki, H., and, Carrington, J.C., (2007) Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J. 52, 133-146. (Pubitemid 47476166)
20. Liu, X., Huang, J., Wang, Y., Khanna, K., Xie, Z., Owen, H.A., and, Zhao, D., (2010) The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression. Plant J. 62, 416-428.
21. Luo, Y.H., Zhou, H., Li, Y., Chen, J.Y., Yang, J.H., Chen, Y.Q., and, Qu, L.H., (2006) Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett. 580, 5111-5116. (Pubitemid 44332385)
22. Mallanna, S.K., and, Rizzino, A., (2010) Emerging roles of microRNAs in the control of embryonic stem cells and the generation of induced pluripotent stem cells. Dev Biol. 344, 16-25.
23. Mayer, K.F., Schoof, H., Haecker, A., Lenhard, M., Jürgens, G., and, Laux, T., (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell, 95, 805-815. (Pubitemid 29014460)
24. Montgomery, T.A., Howell, M.D., Cuperus, J.T., Li, D., Hansen, J.E., Alexander, A.L., Chapman, E.J., Fahlgren, N., Allen, E., and, Carrington, J.C., (2008) Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell, 133, 128-141.
25. Murashige, T., and, Skoog, F., (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
26. Palatnik, J.F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J.C., and, Weigel, D., (2003) Control of leaf morphogenesis by microRNAs. Nature, 425, 257-263. (Pubitemid 37158395)
27. Pruss, G.J., Nester, E.W., and, Vance, V., (2008) Infiltration with Agrobacterium tumefaciens induces host defense and development-dependent responses in the infiltrated zone. Mol. Plant Microbe Interact. 21, 1528-1538.
28. Raman, S., Greb, T., Peaucelle, A., Blein, T., Laufs, P., and, Theres, K., (2008) Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana. Plant J. 55, 65-76. (Pubitemid 351990933)
29. Schoof, H., Lenhard, M., Haecker, A., Mayer, K.F., Jürgens, G., and, Laux, T., (2000) The stem cell population of Arabidopsis shoot meristems is maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell, 100, 635-644.
30. Seo, P.J., Xiang, F.N., Qiao, M., Park, J.Y., Lee, Y.N., Kim, S.G., Lee, Y.H., Park, W.J., and, Park, C.M., (2009) The MYB96 transcription factor mediates abscisic acid signaling during drought stress response in Arabidopsis. Plant Physiol. 151, 275-289.
31. Souer, E., van Houwelingen, A., Kloos, D., Mol, J., and, Koes, R., (1996) The NO APICAL MERISTEM gene of petunia is required for pattern formation in embryos and flowers and expressed at meristem and primordial boundaries. Cell, 85, 159-170. (Pubitemid 26118159)
32. Sunkar, R., Chinnusamy, V., Zhu, J., and, Zhu, J.K., (2007) Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci. 12, 301-309. (Pubitemid 47031665)
33. Takada, S., Hibara, K., Ishida, T., and, Tasaka, M., (2001) The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. Development, 128, 1127-1135. (Pubitemid 32401428)
34. Vidal, E.A., Araus, V., Lu, C., Parry, G., Green, P.J., Coruzzi, G.M., and, Gutiérrez, R.A., (2010) Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 107, 4477-4482.
35. Wu, M.F., Tian, Q., and, Reed, J.W., (2006) Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development, 133, 4211-4218. (Pubitemid 44830665)
36. Wu, G., Park, M.Y., Conway, S.R., Wang, J.W., Weigel, D., and, Poethig, R.S., (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell, 138, 750-759.
37. Zhao, Q., Fisher, R., and, Auer, C., (2002) Developmental phases and STM expression during Arabidopsis shoot organogenesis. Plant Growth Reg. 37, 223-231. (Pubitemid 35337424)