-
1
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C, (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
2
-
-
0030777303
-
CATH-a hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, et al. (1997) CATH-a hierarchic classification of protein domain structures. Structure 5: 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
-
3
-
-
44349134514
-
SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
-
Kurgan L, Cios K, Chen K, (2008) SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences. BMC Bioinformatics 9: 226.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 226
-
-
Kurgan, L.1
Cios, K.2
Chen, K.3
-
4
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR, (2005) NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 33: D501-504.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
5
-
-
0001040367
-
An algorithm for protein secondary structure prediction based on class prediction
-
Deleage G, Roux B, (1987) An algorithm for protein secondary structure prediction based on class prediction. Protien Eng 1: 289-294.
-
(1987)
Protien Eng
, vol.1
, pp. 289-294
-
-
Deleage, G.1
Roux, B.2
-
6
-
-
34948846599
-
PreSSAPro: a software for the prediction of secondary structure by amino acid properties
-
Costantini S, Colonna G, Facchiano AM, (2007) PreSSAPro: a software for the prediction of secondary structure by amino acid properties. Comput Biol Chem 31: 389-392.
-
(2007)
Comput Biol Chem
, vol.31
, pp. 389-392
-
-
Costantini, S.1
Colonna, G.2
Facchiano, A.M.3
-
7
-
-
0022631926
-
The folding type of a protein is relevant to the amino acid composition
-
Nakashima H, Nishikawa K, Ooi T, (1986) The folding type of a protein is relevant to the amino acid composition. J Biochem 99: 153-162.
-
(1986)
J Biochem
, vol.99
, pp. 153-162
-
-
Nakashima, H.1
Nishikawa, K.2
Ooi, T.3
-
8
-
-
0029051959
-
A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
-
Chou KC, (1995) A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins 21: 319-344.
-
(1995)
Proteins
, vol.21
, pp. 319-344
-
-
Chou, K.C.1
-
9
-
-
0030955263
-
Understanding the recognition of protein structural classes by amino acid composition
-
Bahar I, Atilgan AR, Jernigan RL, Erman B, (1997) Understanding the recognition of protein structural classes by amino acid composition. Proteins 29: 172-185.
-
(1997)
Proteins
, vol.29
, pp. 172-185
-
-
Bahar, I.1
Atilgan, A.R.2
Jernigan, R.L.3
Erman, B.4
-
10
-
-
0033554601
-
A key driving force in determination of protein structural classes
-
Chou KC, (1999) A key driving force in determination of protein structural classes. Biochem Biophys Res Commun 264: 216-224.
-
(1999)
Biochem Biophys Res Commun
, vol.264
, pp. 216-224
-
-
Chou, K.C.1
-
11
-
-
33845338429
-
Using Bagging classifier to predict protein domain structural class
-
Dong L, Yuan Y, Cai Y, (2006) Using Bagging classifier to predict protein domain structural class. J Biomol Struct Dyn 24: 239-242.
-
(2006)
J Biomol Struct Dyn
, vol.24
, pp. 239-242
-
-
Dong, L.1
Yuan, Y.2
Cai, Y.3
-
12
-
-
0026632379
-
Predicting protein secondary structure content: a tandem neural network approach
-
Muska SM, Kim SH, (1992) Predicting protein secondary structure content: a tandem neural network approach. J Mol Biol 255: 713-727.
-
(1992)
J Mol Biol
, vol.255
, pp. 713-727
-
-
Muska, S.M.1
Kim, S.H.2
-
13
-
-
47549084414
-
Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes
-
Xiao X, Lin WZ, Chou KC, (2008) Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes. J Comput Chem 29: 2018-2024.
-
(2008)
J Comput Chem
, vol.29
, pp. 2018-2024
-
-
Xiao, X.1
Lin, W.Z.2
Chou, K.C.3
-
14
-
-
67650739405
-
Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis
-
Li ZC, Zhou XB, Dai Z, Zou XY, (2009) Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis. Amino Acids 37: 415-425.
-
(2009)
Amino Acids
, vol.37
, pp. 415-425
-
-
Li, Z.C.1
Zhou, X.B.2
Dai, Z.3
Zou, X.Y.4
-
15
-
-
0036051172
-
Prediction of protein structural class by amino acid and polypeptide composition
-
Luo RY, Feng ZP, Liu JK, (2002) Prediction of protein structural class by amino acid and polypeptide composition. Eur J Biochem 269: 4219-4225.
-
(2002)
Eur J Biochem
, vol.269
, pp. 4219-4225
-
-
Luo, R.Y.1
Feng, Z.P.2
Liu, J.K.3
-
16
-
-
58849136179
-
Prediction of the protein structural class by specific peptide frequencies
-
Costantini S, Facchiano AM, (2009) Prediction of the protein structural class by specific peptide frequencies. Biochimie 91: 226-229.
-
(2009)
Biochimie
, vol.91
, pp. 226-229
-
-
Costantini, S.1
Facchiano, A.M.2
-
17
-
-
0000520412
-
Prediction of protein (domain) structural classes based on amino-acid index
-
Bu WS, Feng ZP, Zhang Z, Zhang CT, (1999) Prediction of protein (domain) structural classes based on amino-acid index. Eur J Biochem 266: 1043-1049.
-
(1999)
Eur J Biochem
, vol.266
, pp. 1043-1049
-
-
Bu, W.S.1
Feng, Z.P.2
Zhang, Z.3
Zhang, C.T.4
-
18
-
-
33644889341
-
Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor
-
Xiao X, Shao SH, Huang ZD, Chou KC, (2006) Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor. Journal of Computational Chemistry 27: 478-482.
-
(2006)
Journal of Computational Chemistry
, vol.27
, pp. 478-482
-
-
Xiao, X.1
Shao, S.H.2
Huang, Z.D.3
Chou, K.C.4
-
19
-
-
3843117638
-
Predicting protein structural class by functional domain composition
-
Chou KC, Cai YD, (2004) Predicting protein structural class by functional domain composition. Biochem Biophys Res Commun 321: 1007-1009.
-
(2004)
Biochem Biophys Res Commun
, vol.321
, pp. 1007-1009
-
-
Chou, K.C.1
Cai, Y.D.2
-
20
-
-
77957124553
-
Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile
-
Liu TG, Zheng XQ, Wang J, (2010) Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile. Biochimie 92: 1330-1334.
-
(2010)
Biochimie
, vol.92
, pp. 1330-1334
-
-
Liu, T.G.1
Zheng, X.Q.2
Wang, J.3
-
21
-
-
84862773713
-
Accurate prediction of protein structural class using auto covariance transformation of PSI-BLAST profiles
-
Liu T, Geng X, Zheng X, Li R, Wang J, (2011) Accurate prediction of protein structural class using auto covariance transformation of PSI-BLAST profiles. Amino Acids.
-
(2011)
Amino Acids
-
-
Liu, T.1
Geng, X.2
Zheng, X.3
Li, R.4
Wang, J.5
-
22
-
-
75149123557
-
Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
-
Mizianty MJ, Kurgan L, (2009) Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences. BMC Bioinformatics 10: 414.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 414
-
-
Mizianty, M.J.1
Kurgan, L.2
-
23
-
-
77956623830
-
A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
-
Liu T, Jia C, (2010) A high-accuracy protein structural class prediction algorithm using predicted secondary structural information. J Theor Biol 267: 272-275.
-
(2010)
J Theor Biol
, vol.267
, pp. 272-275
-
-
Liu, T.1
Jia, C.2
-
24
-
-
76649141763
-
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
-
Yang JY, Peng ZL, Chen X, (2010) Prediction of protein structural classes for low-homology sequences based on predicted secondary structure. BMC Bioinformatics 11: S9.
-
(2010)
BMC Bioinformatics
, vol.11
-
-
Yang, J.Y.1
Peng, Z.L.2
Chen, X.3
-
25
-
-
62549159517
-
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
-
Yang JY, Peng ZL, Yu ZG, Zhang RJ, Anh V, et al. (2009) Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation. J Theor Biol 257: 618-626.
-
(2009)
J Theor Biol
, vol.257
, pp. 618-626
-
-
Yang, J.Y.1
Peng, Z.L.2
Yu, Z.G.3
Zhang, R.J.4
Anh, V.5
-
26
-
-
22144498433
-
Using supervised fuzzy clustering to predict protein structural classes
-
Shen HB, Yang J, Liu XJ, Chou KC, (2005) Using supervised fuzzy clustering to predict protein structural classes. Biochemical and Biophysical Research Communications 334: 577-581.
-
(2005)
Biochemical and Biophysical Research Communications
, vol.334
, pp. 577-581
-
-
Shen, H.B.1
Yang, J.2
Liu, X.J.3
Chou, K.C.4
-
27
-
-
0032054085
-
Prediction and classification of domain structural classes
-
Chou KC, Liu WM, Maggiora GM, Zhang CT, (1998) Prediction and classification of domain structural classes. Proteins-Structure Function and Genetics 31: 97-103.
-
(1998)
Proteins-Structure Function and Genetics
, vol.31
, pp. 97-103
-
-
Chou, K.C.1
Liu, W.M.2
Maggiora, G.M.3
Zhang, C.T.4
-
28
-
-
0034141493
-
How good is prediction of protein structural class by the component-coupled method?
-
Wang ZX, Yuan Z, (2000) How good is prediction of protein structural class by the component-coupled method? Proteins-Structure Function and Genetics 38: 165-175.
-
(2000)
Proteins-Structure Function and Genetics
, vol.38
, pp. 165-175
-
-
Wang, Z.X.1
Yuan, Z.2
-
29
-
-
0033809190
-
Prediction of protein structural classes by neural network
-
Cai Y, Zhou G, (2000) Prediction of protein structural classes by neural network. Biochimie 82: 783-785.
-
(2000)
Biochimie
, vol.82
, pp. 783-785
-
-
Cai, Y.1
Zhou, G.2
-
30
-
-
33747182577
-
Classifier ensembles for protein structural class prediction with varying homology
-
Kedarisetti KD, Kurgan L, Dick S, (2006) Classifier ensembles for protein structural class prediction with varying homology. Biochem Biophys Res Commun 348: 981-988.
-
(2006)
Biochem Biophys Res Commun
, vol.348
, pp. 981-988
-
-
Kedarisetti, K.D.1
Kurgan, L.2
Dick, S.3
-
31
-
-
34247094836
-
Prediction of protein structural class for the twilight zone sequences
-
Kurgan L, Chen K, (2007) Prediction of protein structural class for the twilight zone sequences. Biochem Biophys Res Commun 357(2): 453-460.
-
(2007)
Biochem Biophys Res Commun
, vol.357
, Issue.2
, pp. 453-460
-
-
Kurgan, L.1
Chen, K.2
-
32
-
-
2942601555
-
Support vector machines for predicting protein structural class
-
Cai YD, Liu XJ, Xu X, Zhou GP, (2001) Support vector machines for predicting protein structural class. BMC Bioinformatics 2: 3.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 3
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.3
Zhou, G.P.4
-
33
-
-
0037423777
-
Support vector machines for prediction of protein domain structural class
-
Cai YD, Liu XJ, Xu XB, Chou KC, (2003) Support vector machines for prediction of protein domain structural class. J Theor Biol 221: 115-120.
-
(2003)
J Theor Biol
, vol.221
, pp. 115-120
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Chou, K.C.4
-
34
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen CB, (1973) Principles that govern the folding of protein chains. Science 181: 223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
35
-
-
0035874145
-
Multiple linear regression for protein secondary structure prediction
-
Pan XM, (2001) Multiple linear regression for protein secondary structure prediction. Proteins 43: 256-259.
-
(2001)
Proteins
, vol.43
, pp. 256-259
-
-
Pan, X.M.1
-
37
-
-
0033977581
-
The ASTRAL compendium for protein structure and sequence analysis
-
Brenner SE, Koehl P, Levitt M, (2000) The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Res 28: 254-256.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
Koehl, P.2
Levitt, M.3
-
38
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
Baldi P, Brunak S, Chauvin Y, Andersen CA, Nielsen H, (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16: 412-424.
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
-
39
-
-
33748415440
-
Prediction of structural classes for protein sequences and domains-impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
-
Kurgan L, Homaeian L, (2006) Prediction of structural classes for protein sequences and domains-impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy. Pattern Recognition. 39 (12): 2323-2343.
-
(2006)
Pattern Recognition
, vol.39
, Issue.12
, pp. 2323-2343
-
-
Kurgan, L.1
Homaeian, L.2
-
40
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
41
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
|