Transcriptional analysis of the Escherichia coli ColV-Ia plasmid pS88 during growth in human serum and urine

BMC Microbiology

Volumn 12, Issue , 2012, Pages

  Lematre, Chloé ^a,b   Bidet, Philippe ^a,b   Bingen, Edouard ^a,b   Bonacorsi, Stéphane ^a,b  

^a UNIVERSITÉ PARIS DESCARTES   (France)

^b HÔPITAL ROBERT DEBRÉ   (France)

Author keywords

Escherichia coli; Iron; Plasmid; RNA; Siderophore; Transcriptome; Virulence

Indexed keywords

BACTERIAL PROTEIN; RNA; TRANSCRIPTOME;

ARTICLE; BACTERIAL GROWTH; BLOOD ANALYSIS; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; HUMAN; MENINGITIS; NONHUMAN; OPEN READING FRAME; PLASMID; PROTEIN FUNCTION; RNA EXTRACTION; UPREGULATION; URINALYSIS; VIRULENCE;

BACTERIOCIN PLASMIDS; CHILD, PRESCHOOL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HUMANS; INFANT; SERUM; TRANSCRIPTION, GENETIC; TRANSCRIPTOME; URINE; VIRULENCE FACTORS;

ESCHERICHIA COLI; LURIA;

EID: 84862490180     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-12-115     Document Type: Article

References (48)

1. Combined Multilocus Sequence Typing and O Serogrouping Distinguishes Escherichia coli Subtypes Associated with Infant Urosepsis and/or Meningitis. Bidet P, Mahjoub-Messai F, Blanco J, Blanco J, Dehem M, Aujard Y, Bingen E, Bonacorsi S, J Infect Dis 2007 196 297 303 10.1086/518897 17570118 (Pubitemid 47047470)
2. Molecular analysis and experimental virulence of french and north american Escherichia coli neonatal meningitis isolates; Identification of new virulent clone. Bonacorsi S, Clermont O, Houdouin V, Cordevant C, Brahimi N, Marecat A, Tinsley C, Nassif X, Lange M, Bingen E, J Infect Dis 2003 187 1895 1906 10.1086/375347 12792866 (Pubitemid 36724488)
3. The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Peigne C, Bidet P, Mahjoub-Messai F, Plainvert C, Barbe V, Medigue C, Frapy E, Nassif X, Denamur E, Bingen E, et al. Infect Immun 2009 77 6 2272 2284 10.1128/IAI.01333-08 19307211
4. DNA sequence of a ColV plasmid and prevalence of selected plasmid-encoded virulence genes among avian Escherichia coli strains. Johnson TJ, Siek KE, Johnson SJ, Nolan LK, J Bacteriol 2006 188 2 745 758 10.1128/JB.188.2.745-758. 2006 16385064 (Pubitemid 43100561)
5. Escherichia coli isolates causing bacteremia via gut translocation and urinary tract infection in young infants exhibit different virulence genotypes. Mahjoub-Messai F, Bidet P, Caro V, Diancourt L, Biran V, Aujard Y, Bingen E, Bonacorsi S, J Infect Dis 2011 203 12 1844 1849 10.1093/infdis/jir189 21550999
6. Characterization of the contribution to virulence of three large plasmids of avian pathogenic Escherichia coli chi7122 (O78:K80:H9). Mellata MAK, Mo H, Curtiss R, Infect Immun 2010 78 4 1528 1541 10.1128/IAI.00981-09 20086082
7. Specific roles of the iroBCDEN genes in virulence of an avian pathogenic Escherichia coli O78 strain and in production of salmochelins. Caza M, Lepine F, Milot S, Dozois CM, Infect Immun 2008 76 8 3539 3549 Epub 2008 Jun 3539 10.1128/IAI.00455-08 18541653
8. Aerobactin and other virulence factor genes among strains of Escherichia coli causing urosepsis: association with patient characteristics. Johnson JR, Moseley SL, Roberts PL, Stamm WE, Infect Immun 1988 56 2 405 412 2892793 (Pubitemid 18040505)
9. A SitABCD homologue from an avian pathogenic Escherichia coli strain mediates transport of iron and manganese and resistance to hydrogen peroxide. Sabri M, Leveille S, Dozois CM, Microbiology 2006 152 Pt 3 745 758 16514154
10. Cloning and DNA sequence of plasmid determinant iss, coding for increased serum survival and surface exclusion, which has homology with lambda DNA. Chuba PJ, Leon MA, Banerjee A, Palchaudhuri S, Mol Gen Genet 1989 216 2-3 287 292 2546040
11. Complement resistance, as determined by viable count and flow cytometric methods, and its association with the presence of iss and the virulence of avian Escherichia coli. Nolan LK, Giddings CW, Horne SM, Doetkott C, Gibbs PS, Wooley RE, Foley SL, Avian Dis 2002 46 2 386 392 10.1637/0005-2086(2002)046[0386: CRADBV]2.0.CO;2 12061648 (Pubitemid 34572972)
12. Identification of OmpT as the protease that hydrolyzes the antimicrobial peptide protamine before it enters growing cells of Escherichia coli. Stumpe S, Schmid R, Stephens DL, Georgiou G, Bakker EP, J Bacteriol 1998 180 15 4002 4006 9683502 (Pubitemid 28361601)
13. Detection of a novel virulence gene and a Salmonella virulence homologue among Escherichia coli isolated from broiler chickens. Morales C, Lee MD, Hofacre C, Maurer JJ, Foodborne Pathog Dis 2004 1 3 160 165 15992275
14. Escherichia coli global gene expression in urine from women with urinary tract infection. Hagan EC, Lloyd AL, Rasko DA, Faerber GJ, Mobley HL, PLoS 2010 6 11 1001187
15. Global gene expression profiling of the asymptomatic bacteriuria Escherichia coli strain 83972 in the human urinary tract. Roos V, Klemm P, Infect Immun 2006 74 6 3565 3575 10.1128/IAI.01959-05 16714589 (Pubitemid 43794548)
16. Transcriptome of uropathogenic Escherichia coli during urinary tract infection. Snyder JA, Haugen BJ, Buckles EL, Lockatell CV, Johnson DE, Donnenberg MS, Welch RA, Mobley HL, Infect Immun 2004 72 11 6373 6381 10.1128/IAI.72.11.6373-6381.2004 15501767 (Pubitemid 39425418)
17. Host imprints on bacterial genomes - rapid, divergent evolution in individual patients. Zdziarski J, Brzuszkiewicz E, Wullt B, Liesegang H, Biran D, Voigt B, Gronberg-Hernandez J, Ragnarsdottir B, Hecker M, Ron EZ, et al. PLoS Pathog 2010 6 8 1001078 10.1371/journal.ppat.1001078 20865122
18. Clinical outcome and bacterial characteristics of 99 Escherichia coli meningitis in young infants. Houdouin V, Bonacorsi S, Bidet P, de La Rocque F, Cohen R, Aujard Y, Bingen E, Arch Pediatr 2008 15 Suppl 3 138 S147 19268244
19. Dynamics of Escherichia coli infection and meningitis in infant rats. Bortolussi R, Ferrieri P, Wannamaker LW, Infect Immun 1978 22 2 480 485 365760 (Pubitemid 9052623)
20. Neonatal Escherichia coli septicemia-bacterial counts in blood. Dietzman DE, Fischer GW, Schoenknecht FD, J Pediatr 1974 85 1 128 130 10.1016/S0022-3476(74)80308-2 4604810
21. Pathogenesis of neonatal Escherichia coli meningitis: induction of bacteremia and meningitis in infant rats fed Escherichia coli K1. Glode MP, Sutton A, Moxon ER, Robbins JB, Infect Immun 1977 16 1 75 80 326679 (Pubitemid 8086697)
22. Quantitative determination of serum iron in human blood by high-performance capillary electrophoresis. Che P, Xu J, Shi H, Ma Y, J Chromatogr B Biomed Appl 1995 669 1 45 51 10.1016/0378-4347(95)00041-G 7581886
23. Association of carboxylesterase B electrophoretic pattern with presence and expression of urovirulence factor determinants and antimicrobial resistance among strains of Escherichia coli that cause urosepsis. Johnson JR, Goullet P, Picard B, Moseley SL, Roberts PL, Stamm WE, Infect Immun 1991 59 7 2311 2315 1675626
24. Identification of genes in an extraintestinal isolate of Escherichia coliwith increased expression after exposure to human urine. Russo TA, Carlino UB, Mong A, Jodush ST, Infect Immun 1999 67 10 5306 5314 10496910 (Pubitemid 29455306)
25. Ongoing horizontal and vertical transmission of virulence genes and papA alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia. Johnson JR, O'Bryan TT, Kuskowski M, Maslow JN, Infect Immun 2001 69 9 5363 5374 10.1128/IAI.69.9.5363-5374.2001 11500406 (Pubitemid 32786468)
26. Contribution of the Shigella flexneri Sit, Iuc, and Feo iron acquisition systems to iron acquisition in vitro and in cultured cells. Runyen-Janecky LJ, Reeves SA, Gonzales EG, Payne SM, Infect Immun 2003 71 4 1919 1928 10.1128/IAI.71.4.1919-1928.2003 12654809 (Pubitemid 36368724)
27. Salmonella typhimurium encodes a putative iron transport system within the centisome 63 pathogenicity island. Zhou D, Hardt WD, Galan JE, Infect Immun 1999 67 4 1974 1981 10085045 (Pubitemid 29144424)
28. Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum reveals adaptive responses to systemic infection. Li G, Tivendale KA, Liu P, Feng Y, Wannemuehler Y, Cai W, Mangiamele P, Johnson TJ, Constantinidou C, Penn CW, et al. Infect Immun 2011 79 5 1951 1960 10.1128/IAI.01230-10 21357721
29. Characterization of the cvaA and cvi promoters of the colicin V export system: iron-dependent transcription of cvaA is modulated by downstream sequences. Boyer AE, Tai PC, J Bacteriol 1998 180 7 1662 1672 9537361 (Pubitemid 28173043)
30. Iron-regulated synthesis and uptake of colicin V. Chehade H, Braun V, FEMS Microbiol 1988 Lett. 52 177 182
31. Genetic analysis of an MDR-like export system: the secretion of colicin V. Gilson L, Mahanty HK, Kolter R, EMBO J 1990 9 12 3875 3884 2249654
32. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ, Nucleic Acids Res 1997 25 17 3389 3402 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
33. The shikimate pathway. Herrmann KM, Weaver LM, Annu Rev Plant Physiol Plant Mol Biol 1999 50 473 503 10.1146/annurev.arplant.50.1.473 15012217 (Pubitemid 30342930)
34. Molecular mechanism of regulation of siderophore-mediated iron assimilation. Bagg A, Neilands JB, Microbiol Rev 1987 51 4 509 518 2963952 (Pubitemid 18019283)
35. Operator sequences of the aerobactin operon of plasmid ColV-K30 binding the ferric uptake regulation (fur) repressor. de Lorenzo V, Wee S, Herrero M, Neilands JB, J Bacteriol 1987 169 6 2624 2630 3294800 (Pubitemid 17104324)
36. The structure of salmochelins: C-glucosylated enterobactins of Salmonella enterica. Bister BBD, Nicholson GJ, Valdebenito M, Schneider K, Winkelmann G, Hantke K, Süssmuth RD, Biometals 2004 17 4 471 481 15259369 (Pubitemid 38870181)
37. The selC-associated SHI-2 pathogenicity island of Shigella flexneri. Moss JE, Cardozo TJ, Zychlinsky A, Groisman EA, Mol Microbiol 1999 33 1 74 83 10.1046/j.1365-2958.1999.01449.x 10411725 (Pubitemid 29304190)
38. Complete DNA sequence of a ColBM plasmid from avian pathogenic Escherichia coli suggests that it evolved from closely related ColV virulence plasmids. Johnson TJ, Johnson SJ, Nolan LK, J Bacteriol 2006 188 16 5975 5983 10.1128/JB.00204-06 16885466 (Pubitemid 44384106)
39. Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis. Rodriguez-Siek KE, Giddings CW, Doetkott C, Johnson TJ, Fakhr MK, Nolan LK, Microbiology 2005 151 Pt 6 2097 2110 15942016 (Pubitemid 40909051)
40. Mutational and transcriptional analyses of an avian pathogenic Escherichia coli ColV plasmid. Skyberg JA, Johnson TJ, Nolan LK, BMC Microbiol 2008 8 24 10.1186/1471-2180-8-24 18230176 (Pubitemid 351432868)
41. Detection and identification by PCR of a highly virulent phylogenetic subgroup among extraintestinal pathogenic Escherichia coli B2 Strains. Bidet P, Metais A, Mahjoub-Messai F, Durand L, Dehem M, Aujard Y, Bingen E, Nassif X, Bonacorsi S, Appl Environ Microbiol 2007 73 7 2373 2377 10.1128/AEM.02341-06 17293507 (Pubitemid 46649536)
42. A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7. Plainvert C, Bidet P, Peigne C, Barbe V, Medigue C, Denamur E, Bingen E, Bonacorsi S, J Bacteriol 2007 189 23 8528 8536 10.1128/JB.01013-07 17905975 (Pubitemid 350210022)
43. The siderophore receptor IroN, but not the high-pathogenicity island or the hemin receptor ChuA, contributes to the bacteremic step of Escherichia coli neonatal meningitis. Negre VL, Bonacorsi S, Schubert S, Bidet P, Nassif X, Bingen E, Infect Immun 2004 72 2 1216 1220 10.1128/IAI.72.2.1216-1220.2004 14742579 (Pubitemid 38166714)
44. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F, Genome Biol 2002 3 7 esearch0034 12184808
45. Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species. Le Gall T, Darlu P, Escobar-Paramo P, Picard B, Denamur E, Genome Res 2005 15 2 260 268 10.1101/gr.2405905 15687289 (Pubitemid 40309390)
46. Primer3 on the WWW for general users and for biologist programmers. Rozen S, Skaletsky H, Bioinformatics Methods and Protocols: Methods in Molecular Biology Humana Press, Totowa, NJ, Krawetz S, Misener S, 2000 365 386
47. Analyzing real-time PCR data by the comparative C(T) method. Schmittgen TD, Livak KJ, Nat Protoc 2008 3 6 1101 1108 10.1038/nprot.2008.73 18546601 (Pubitemid 351818697)
48. Housekeeping genes as internal standards: use and limits. Thellin O, Zorzi W, Lakaye B, De Borman B, Coumans B, Hennen G, Grisar T, Igout A, Heinen E, J Biotechnol 1999 75 2-3 291 295 10617337 (Pubitemid 29486627)