-
1
-
-
0037329391
-
Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
-
Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255-266
-
(2003)
Mol Biol Evol
, vol.20
, pp. 255-266
-
-
Alfaro, M.E.1
Zoller, S.2
Lutzoni, F.3
-
2
-
-
0002323484
-
Northern pyrenomycetes I. Canadian Eastern Arctic
-
Barr ME. 1959. Northern pyrenomycetes I. Canadian Eastern Arctic. Contrib inst bot úniv Montréal 73:5-103.
-
(1959)
Contrib inst bot úniv Montréal
, vol.73
, pp. 5-103
-
-
Barr, M.E.1
-
3
-
-
0003192165
-
Prodromus to nonlichenized, pyrenomycteous members of class Hymenoascomycetes
-
Barr ME. 1990. Prodromus to nonlichenized, pyrenomycteous members of class Hymenoascomycetes. Mycotaxon 39:43-184.
-
(1990)
Mycotaxon
, vol.39
, pp. 43-184
-
-
Barr, M.E.1
-
4
-
-
21344486470
-
Notes on the Amphisphaeriaceae and related families
-
Barr ME. 1994. Notes on the Amphisphaeriaceae and related families. Mycotaxon 51:191-224.
-
(1994)
Mycotaxon
, vol.51
, pp. 191-224
-
-
Barr, M.E.1
-
5
-
-
0036864471
-
A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences
-
Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN. 2002. A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017-1031
-
(2002)
Mycologia
, vol.94
, pp. 1017-1031
-
-
Castlebury, L.A.1
Rossman, A.Y.2
Jaklitsch, W.J.3
Vasilyeva, L.N.4
-
6
-
-
0038530927
-
Biogeographic relationships between fungi and selected glacial relict plants. The use of hostfungus data as an aid to plant geography on the basis of material from Europe, Greenland and northern Asia
-
Chlebicki A. 2002. Biogeographic relationships between fungi and selected glacial relict plants. The use of hostfungus data as an aid to plant geography on the basis of material from Europe, Greenland and northern Asia. Monogr Bot 90:1-230.
-
(2002)
Monogr Bot
, vol.90
, pp. 1-230
-
-
Chlebicki, A.1
-
7
-
-
57649213842
-
Characterization and phylogenetic relationships of Anisogramma virgultorum and A. anomala in the Diaporthales (Ascomycota)
-
De Silva H, Castlebury LA, Green S, Stone JK. 2009. Characterization and phylogenetic relationships of Anisogramma virgultorum and A. anomala in the Diaporthales (Ascomycota). Mycol Res 113:73-81
-
(2009)
Mycol Res
, vol.113
, pp. 73-81
-
-
De Silva, H.1
Castlebury, L.A.2
Green, S.3
Stone, J.K.4
-
8
-
-
0032731544
-
PCR optimization and troubleshooting, with special reference to the amplification of ribosomal DNA in lichenized fungi
-
Ekman S. 1999. PCR optimization and troubleshooting, with special reference to the amplification of ribosomal DNA in lichenized fungi. Lichenologist 31: 517-531.
-
(1999)
Lichenologist
, vol.31
, pp. 517-531
-
-
Ekman, S.1
-
10
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
-
Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118
-
(1993)
Mol Ecol
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
11
-
-
33746072534
-
Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera
-
Gryzenhout M, Myburg H, Wingfield BD, Wingfield MJ. 2006. Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera. Mycologia 98:239-249
-
(2006)
Mycologia
, vol.98
, pp. 239-249
-
-
Gryzenhout, M.1
Myburg, H.2
Wingfield, B.D.3
Wingfield, M.J.4
-
12
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192.
-
(1993)
Syst Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
13
-
-
1542748497
-
Taxonomic notes on ascomycetes VIII. Microfungi on Cassiope tetragona
-
Holm L. 1975. Taxonomic notes on ascomycetes VIII. Microfungi on Cassiope tetragona. Svensk Bot Tidskr 69: 143-160.
-
(1975)
Svensk Bot Tidskr
, vol.69
, pp. 143-160
-
-
Holm, L.1
-
14
-
-
0002500860
-
Microfungi on Dryas
-
Holm L. 1979. Microfungi on Dryas. Bot Notiser 132:77-92.
-
(1979)
Bot Notiser
, vol.132
, pp. 77-92
-
-
Holm, L.1
-
15
-
-
1542433464
-
Microfungi on Cassiope (Harrimanella) hypnoides
-
Holm L, Holm K. 1980. Microfungi on Cassiope (Harrimanella) hypnoides. Norweg J Bot 27:179-184.
-
(1980)
Norweg J Bot
, vol.27
, pp. 179-184
-
-
Holm, L.1
Holm, K.2
-
16
-
-
1542658431
-
Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined
-
Huhndorf SM, Miller AN, Fernández FA. 2004. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96:368-387
-
(2004)
Mycologia
, vol.96
, pp. 368-387
-
-
Huhndorf, S.M.1
Miller, A.N.2
Fernández, F.A.3
-
17
-
-
0003804933
-
-
10th ed. Wallingford, UK: CAB International
-
Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi. 10th ed. Wallingford, UK: CAB International. 784 p.
-
(2008)
Dictionary of the Fungi
, pp. 784
-
-
Kirk, P.M.1
Cannon, P.F.2
Minter, D.W.3
Stalpers, J.A.4
-
18
-
-
80051511738
-
Outline of Ascomycota 2009 Part 1
-
Lumbsch HT, Huhndorf SM. 2009. Outline of Ascomycota 2009 Part 1. Myconet 14:1-42.
-
(2009)
Myconet
, vol.14
, pp. 1-42
-
-
Lumbsch, H.T.1
Huhndorf, S.M.2
-
20
-
-
34250184629
-
Molecular characterization of strawberry pathogen Gnomonia fragrariae and its genetic relatedness to other Gnomonia species and members of Diaporthales
-
Morocko I, Fatehi J. 2007. Molecular characterization of strawberry pathogen Gnomonia fragrariae and its genetic relatedness to other Gnomonia species and members of Diaporthales. Mycol Res 111:603-614
-
(2007)
Mycol Res
, vol.111
, pp. 603-614
-
-
Morocko, I.1
Fatehi, J.2
-
21
-
-
84872753935
-
Über die neue sphaeriale Gattung Cainiella
-
Müller E. 1956. Über die neue sphaeriale Gattung Cainiella. Sydowia 10:118-121.
-
(1956)
Sydowia
, vol.10
, pp. 118-121
-
-
Müller, E.1
-
22
-
-
0002248683
-
Die Gattungen der didymosporen Pyrenomyceten. Beitrage zur Kryptogamenflora der Schweiz
-
Müller E, von Arx JA. 1962. Die Gattungen der didymosporen Pyrenomyceten. Beitrage zur Kryptogamenflora der Schweiz. Sydowia 11:1-922.
-
(1962)
Sydowia
, vol.11
, pp. 1-922
-
-
Müller, E.1
von Arx, J.A.2
-
23
-
-
0003045750
-
Ascomyceten auf Gefässpflanzen der Polterseggenrasen in den Ostalpen
-
Nograsek A. 1990. Ascomyceten auf Gefässpflanzen der Polterseggenrasen in den Ostalpen. Bibliotheca Mycol 133:1-271.
-
(1990)
Bibliotheca Mycol
, vol.133
, pp. 1-271
-
-
Nograsek, A.1
-
24
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
25
-
-
0000179255
-
Molecular systematics of the Hypocreales-a teleomorph gene phylogeny and the status of their anamorphs
-
Rehner SA, Samuels GL. 1995. Molecular systematics of the Hypocreales-a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 73:816-823
-
(1995)
Can J Bot
, vol.73
, pp. 816-823
-
-
Rehner, S.A.1
Samuels, G.L.2
-
26
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-157
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-2157
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
27
-
-
34249699154
-
A review of the phylogeny and biology of the Diaporthales
-
Rossman AY, Farr DF, Castlebury LA. 2007. A review of the phylogeny and biology of the Diaporthales. Mycoscience 48:135-144
-
(2007)
Mycoscience
, vol.48
, pp. 135-144
-
-
Rossman, A.Y.1
Farr, D.F.2
Castlebury, L.A.3
-
28
-
-
67749119915
-
The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits
-
Schoch CL, Sung GH, Lopez-Giraldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lucking R, Budel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW. 2009. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224-239
-
(2009)
Syst Biol
, vol.58
, pp. 224-239
-
-
Schoch, C.L.1
Sung, G.H.2
Lopez-Giraldez, F.3
Townsend, J.P.4
Miadlikowska, J.5
Hofstetter, V.6
Robbertse, B.7
Matheny, P.B.8
Kauff, F.9
Wang, Z.10
Gueidan, C.11
Andrie, R.M.12
Trippe, K.13
Ciufetti, L.M.14
Wynns, A.15
Fraker, E.16
Hodkinson, B.P.17
Bonito, G.18
Groenewald, J.Z.19
Arzanlou, M.20
de Hoog, G.S.21
Crous, P.W.22
Hewitt, D.23
Pfister, D.H.24
Peterson, K.25
Gryzenhout, M.26
Wingfield, M.J.27
Aptroot, A.28
Suh, S.O.29
Blackwell, M.30
Hillis, D.M.31
Griffith, G.W.32
Castlebury, L.A.33
Rossman, A.Y.34
Lumbsch, H.T.35
Lucking, R.36
Budel, B.37
Rauhut, A.38
Diederich, P.39
Ertz, D.40
Geiser, D.M.41
Hosaka, K.42
Inderbitzin, P.43
Kohlmeyer, J.44
Volkmann-Kohlmeyer, B.45
Mostert, L.46
O'Donnell, K.47
Sipman, H.48
Rogers, J.D.49
Shoemaker, R.A.50
Sugiyama, J.51
Summerbell, R.C.52
Untereiner, W.53
Johnston, P.R.54
Stenroos, S.55
Zuccaro, A.56
Dyer, P.S.57
Crittenden, P.D.58
Cole, M.S.59
Hansen, K.60
Trappe, J.M.61
Yahr, R.62
Lutzoni, F.63
Spatafora, J.W.64
more..
-
29
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
30
-
-
34247558477
-
A five-gene phylogeny of Pezizomycotina
-
Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Budel B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL. 2006. A five-gene phylogeny of Pezizomycotina. Mycologia 98:1018-1028
-
(2006)
Mycologia
, vol.98
, pp. 1018-1028
-
-
Spatafora, J.W.1
Sung, G.H.2
Johnson, D.3
Hesse, C.4
O'Rourke, B.5
Serdani, M.6
Spotts, R.7
Lutzoni, F.8
Hofstetter, V.9
Miadlikowska, J.10
Reeb, V.11
Gueidan, C.12
Fraker, E.13
Lumbsch, T.14
Lücking, R.15
Schmitt, I.16
Hosaka, K.17
Aptroot, A.18
Roux, C.19
Miller, A.N.20
Geiser, D.M.21
Hafellner, J.22
Hestmark, G.23
Arnold, A.E.24
Budel, B.25
Rauhut, A.26
Hewitt, D.27
Untereiner, W.A.28
Cole, M.S.29
Scheidegger, C.30
Schultz, M.31
Sipman, H.32
Schoch, C.L.33
more..
-
34
-
-
0025374564
-
Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species
-
Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
-
(1990)
J Bacteriol
, vol.172
, pp. 4238-4246
-
-
Vilgalys, R.1
Hester, M.2
-
35
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. New York: Academic Press
-
White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
-
(1990)
PCR protocols: a guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.W.4
-
36
-
-
0034769806
-
Primers for amplification of mtSSU rDNA and a phylogenetic study of Botryosphaeria and associated anamorphic fungi
-
Zhou S, Stanosz GR. 2001. Primers for amplification of mtSSU rDNA and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycol Res 105:1033-1044
-
(2001)
Mycol Res
, vol.105
, pp. 1033-1044
-
-
Zhou, S.1
Stanosz, G.R.2
-
37
-
-
0032714017
-
PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes
-
Zoller S, Scheidegger C, Sperisen C. 1999. PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31:511-516.
-
(1999)
Lichenologist
, vol.31
, pp. 511-516
-
-
Zoller, S.1
Scheidegger, C.2
Sperisen, C.3
|