Sequestrate species of Agaricus and Macrolepiota from Australia: New species and combinations and their position in a calibrated phylogeny

Mycologia

Volumn 104, Issue 2, 2012, Pages 496-520

  Lebel, Teresa ^a   Syme, Anna ^a  

^a ROYAL BOTANIC GARDENS MELBOURNE   (Australia)

Author keywords

Agaricaceae; Endoptychum; Nomenclature; Taxonomy; Timing of evolution

Indexed keywords

FUNGAL DNA; FUNGAL RNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; RNA 28S;

AGE; GENETIC ANALYSIS; MOLECULAR ANALYSIS; MUSHROOM; NEW SPECIES; NOMENCLATURE; PHYLOGENY; TAXONOMY; TEMPORAL PERIOD;

AGARICALES; AGARICUS; ARTICLE; AUSTRALIA; CHEMISTRY; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; EVOLUTION; FRUITING BODY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; TIME;

AGARICALES; AGARICUS; AUSTRALIA; BASE SEQUENCE; BIOLOGICAL EVOLUTION; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FRUITING BODIES, FUNGAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, FUNGAL; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA; TIME FACTORS;

AGARICACEAE; AGARICALES; AGARICUS; BARCHERIA; CHLOROPHYLLUM; ENDOPTYCHUM; MACROLEPIOTA;

EID: 84862332031     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-092     Document Type: Article

References (68)

1. Barker WR. 2005. Standardizing informal names in Australian publications. Aust Syst Bot Newslett 122:11.
2. Bas C. 1991. A short introduction to the ecology, taxonomy and nomenclature of the genus Agaricus. In: van Griensven LJLD, ed. Genetics and breeding of Agaricus. Proceedings of the 1st International Seminar on Mushroom Science, Pudoc Wageningen. p 21-24.
3. Berkeley MJ. 1845. Decades of fungi. Dec III-VII. Australian fungi. London J Bot 4:42-73.
4. Berkeley MJ. 1859. Fungi. In: Hooker JD. The botany of the Antarctic voyage of H.M. discovery ships Erebus and Terror, in the years 1839-1843 Part III. Flora Tasmaniae. Vol. 2 Monocotyledones and Acotyledones. London: Lovell Reeve, 241-282.
5. Candusso M, Lanzoni G. 1990. Lepiota s.l. Fungi Europaei 4. Sareno, Italy: Giovanna Biella. 743 p.
6. Chang Y-S, Kantvilas G. 1993. A catalogue of Leonard Rodway's collection of fungi I. Hymenomycetes and Gasteromycetes. Tasmanian Herbarium Occasional Publication No. 4. Hobart: Tasmanian Museum and Art Gallery. 43 p.
7. Cooke MC. 1889. New Australian fungi. Grevillea 18:1-8.
8. Corda ACJ. 1854. Icones fungorum. Vol. 6. Prague: Libraria Friderici Ehrlich. 91 p.
9. Crisp M, Cook L, Steane D. 2004. Radiation of the Australian flora: What can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philos Trans Roy Soc London B 359:1551-1571, doi:10.1098/rstb.2004.1528
10. Cunningham GH. 1935. The Gasteromycetes of Australasia XVII, Some new species of Hymenogastraceae. Proc Linn Soc New South Wales 60:119-120.
11. Cunningham GH. 1979. The Gasteromycetes of Australia and New Zealand. Band 67. Vaduz: Cramer. 236 p.
12. Czernajew BM. 1845. Nouveaux cryptogames de l'Ukraine et quelques mots sur la flore de ce pays. Bull Soc Imp Natl Moscou 18(2, III):148.
13. Danks M, Lebel T, Vernes K. 2010. Cort short on a mountaintop-Eight new species of sequestrate Cortinarius from sub-alpine Australia and affinities to sections within the genus. Persoonia 24:106-126, doi:10.3767/003158510X512711
14. Ding ZQ, Huang SZ. 2003. Characteristics and high-yield culture technique of Macrolepiota procera. Edible Fungi 4:33.
15. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A. 2006. Relaxed phylogenetics and dating with confidence. PLoS biology 4:e88, doi:10.1371/journal.pbio.0040088
16. Drummond AJ, Rambaut A. 2007. BEAST: bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214, doi:10.1186/1471-2148-7-214
17. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797, doi:10.1093/nar/gkh340
18. Fries EM. 1836-1838. Epicrisis systematis mycologici. Uppsala, Sweden: Typographia Academica. 610 p.
19. Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity of basidiomycetes: application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118, doi:10.1111/j.1365-294X.1993.tb00005.x
20. Ge ZW, Yang ZL, Vellinga EC. 2010. The genus Macrolepiota (Agaricaceae, Basidiomycota) in China. Fungal Divers 45:81-98, doi:10.1007/s13225-010-0062-0
21. Geml J. 2004. Evolution in action: molecular evidence for recent emergence of secotioid genera Endoptychum, Gyrophragmium and Longula from Agaricus ancestors. Acta Microbio Immunol Hungarica 51:97-108, doi:10.1556/AMicr.51.2004.1-2.7
22. Geml J, Geiser DM, Royse DJ. 2004. Molecular evolution of Agaricus species based on ITS and LSU rDNA sequences. Mycol Prog 3:157-176, doi:10.1007/ s11557-006-0086-8
23. Geml J, Laursen GA, Nusbaum HC, Taylor DL. 2007. Two new species of Agaricus from the Subantarctic. Mycotaxon 100:193-208.
24. Geml J, Laursen GA, Taylor DL. 2008. Molecular diversity assessment of arctic and boreal Agaricus taxa. Mycologia 100:577-589, doi:10.3852/07-042R1
25. Grgurinovic CA. 1997. Larger fungi of South Australia. Adekaude: Botanic Gardens and State Herbarium. [725] p.
26. Gube M. 2009. Ontogeny and phylogeny of gasteroid members of Agaricaceae (Basidiomycetes). [doctoral dissertation]. Jena, Germany: Friedrich-Schiller-Universitat. [145] p.
27. Heckman DS, Geiser DM, Eidell BR, Stauffer RL, Kardos NL, Hedges SB. 2001. Molecular evidence for the early colonization of land by fungi and plants. Science 293: 1129-1133, doi:10.1126/science.1061457
28. Hibbett DS. 2004. Trends in morphological evolution in Homobasidiomycetes inferred using maximum likelihood: a comparison of binary and multistate approaches. Syst Biol 53:889-903, doi:10.1080/10635150490522610
29. Ho SYM. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. J Avian Biol 38: 409-414.
30. Hollos L. 1903. Magyarország Gasteromycetái (Gasteromycetes Hungariae). Franklin Társulat, Budapest. 248 p.
31. Hopple JS, Vilgalys R. 1999. Phylogenetic relationshjps among coprinoid taxa and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups and monophyly. Mol Phylog Evol 13:1-19, doi:10.1006/mpev.1999.0634
32. Jülich W. 1982. Higher taxa of Basidiomycetes. Bibliotheca Mycol 85:1-485.
33. Kerrigan RW, Callac P, Guinberteau J, Challen MP, Parra LA. 2006. Agaricus section Xanthodermatei: a phylogenetic reconstruction with commentary on taxa. Mycologia 97:1318-1341.
34. Kirk PM, Cannon PF, MinterDW, Stalpers JA. 2008. Dictionary of the Fungi. 10th ed. Wallingford, UK: CABI. 771 p.
35. Krüger D, Binder M, Fischer M, Kreisel H. 2001. The Lycoperdales. A molecular approach to the systematics of some gasteroid mushrooms. Mycologia 93:947-957, doi:10.2307/3761759
36. Lebel T, Thompson D, Udovicic F. 2004. Descriptions and affinities of a new sequestrate fungus, Barcheria willisiana gen. et sp. nov. (Agaricales) from Australia. Mycol Res 108:206-213, doi:10.1017/S0953756203008736
37. Lebel T, Tonkin JE. 2007. Australasian species of Macowanites are sequestrate species of Russula (Russulaceae, Basidiomycota). Aust Syst Bot 20:355-381, doi:10.1071/ SB07007
38. Lloyd CG. 1918. Mycological notes 55 [Mycol Writings 5:781-796].
39. Maddison WP, Maddison DR. 2010. Mesquite 2.73: a modular system for evolutionary analysis. http://mesquiteproject.org
40. Martin HA. 2006. Cenozoic climatic change and the development of the arid vegetation in Australia. J Arid Environ 66:533-563, doi:10.1016/j.jaridenv.2006.01.009
41. Matheny PB, Aime MC, Bougher NL, Buyck B, Desjardin D, Horak E, Kropp BR, Lodge DJ, Soyton K, Trappe JM, Hibbett DS. 2009. Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J Biogeogr 36:577-592, doi:10.1111/j.1365-2699.2008.02055.x
42. Hibbett DS, Curtis JM, Hofstetter V, Aime MC, Moncalvo J-M, Ge Z-W, Yang Z-L, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2007. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982-995, doi:10.3852/mycologia.98. 982
43. May TW, Milne J, Wood AE, Shingles S, Jones RH, Neish P. Interactive catalogue of Australian fungi. VersionAustralian Biological Resources Study, Canberra/ Royal Botanic Gardens Melbourne. http://www.rbg.vic.gov.au/dbpages/cat/index.php/fungicatalogue
44. Mitchell AD, Bresinsky A. 1999. Phylogenetic relationships of Agaricus species based on ITS-2 and 28S ribosomal DNA sequences. Mycologia 91:811-819, doi:10.2307/ 3761534
45. Moncalvo J-M, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49:278-305, doi:10.1093/sysbio/49.2.278
46. Moncalvo J-M, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin SJW, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clemencon H, Miller OK Jr. One hundred seventeen clades of euagarics. Mol Phylogenet Evol 23:357-400, doi:10.1016/S1055-7903 (02)00027-1
47. Montagne C. 1843. Considérations générales sur la tribu des Podaxinées et fondation du nouveau genre Gyrophragmium, appartenant a' cette tribu. Ann Sci Nat, Bot 20 ser. II:69-91.
48. Moreno G, Esqueda M, Pérez-Silva E, Herrera T, Altés A. Some interesting gasteroid and secotioid fungi from Sonora, Mexico. Persoonia 19:265-280.
49. Nagy LG, Walther G, Hazi J, Vagvolgyi C, Papp T. 2011. Understanding the evolutionary processes of fungal fruiting bodies: correlated evolution and divergence times in the Psathyrellaceae. Syst Biol 60:303-317, doi:10.1093/sysbio/syr005
50. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818, doi:10.1093/bioinformatics/14.9.817
51. Rambaut A. 2009. FigTree 1.3.1 http://tree.bio.ed.ac.uk/software/figtree
52. Redhead SA, Vilgalys R, Moncalvo J-M, Johnson J, Hopple JS. 2001. Coprinus Persoon and the disposition of Coprinus species sensu lato. Taxon 50:203-241, doi:10.2307/1224525
53. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574, doi:10.1093/bioinformatics/ btg180
54. Shear CL. 1902. Mycological notes and new species. Bull Torrey Bot Club 29:449-457, doi:10.2307/2478544
55. Singer R. 1986. The Agaricales in modern taxonomy. 4th ed. Konigstein, Germany: Koeltz Scientific Books. 912 p.
56. Singer R, Smith AH. 1958. Studies on secotiaceous fungi II. Endoptychum depressum. Brittonia 10:216-221, doi:10. 2307/2804952
57. Swofford DL. 2002. PAUP* 4.0: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
58. Thiers B. [continuously updated]. Index herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. http://sweetgum.nybg.org/ih/
59. Thiers B. 1984. The secotioid syndrome. Mycologia 76:1-8, doi:10.2307/3792830
60. Vellinga EC. 2002. New combinations in Chlorophyllum. Mycotaxon 83:415-417.
61. Vellinga EC. 2003. Notes on Chlorophyllum and Macrolepiota (Agaricaceae) in Australia. Aust Syst Bot 16:361-370, doi:10.1071/SB02013
62. Vellinga EC. 2004. Genera in the family Agaricaceae-evidence from nrITS and nrLSU sequences. Mycol Res 108:354- [377,] doi:10.1017/S0953756204009700
63. Vellinga EC, de Kok RPJ, Bruns TD. 2003. Phylogeny and taxonomy of Macrolepiota (Agaricaceae). Mycologia 95:442-456, doi:10.2307/3761886
64. Vellinga EC, Sysouphanthong P, Hyde KE. 2011. The family Agaricaceae: phylogenies and two new white-spored genera. Mycologia 103:510-524, doi:10.3852/10-204
65. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Shinsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322
66. Wilgenbusch JC, Warren DL, Swofford D. 2004. AWTY: A system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. http://ceb.csit.fsu.edu/awty
67. Wilson AW, Binder M, Hibbett DS. 2011. Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis. Evolution 65:1305-1322, doi:10.1111/j.1558-5646.2010.01214.x
68. Wright JE. 1975. Smithiogaster, a new genus of agaricoid Gasteromycetes. Nova Hedwigia 51:359-364.