-
1
-
-
0031024440
-
Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: A molecule for phylogenetic and enzymological investigation
-
DOI 10.1016/S0378-1097(96)00417-X, PII S037810979600417X
-
Watson, G. M., and Tabita, F. R. (1997) Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation. FEMS Microbiol. Lett. 146, 13-22 (Pubitemid 27041736)
-
(1997)
FEMS Microbiology Letters
, vol.146
, Issue.1
, pp. 13-22
-
-
Watson, G.M.F.1
Tabita, F.R.2
-
2
-
-
0031752797
-
Something from almost nothing: Carbon dioxide fixation in chemoautotrophs
-
DOI 10.1146/annurev.micro.52.1.191
-
Shively, J. M., van Keulen, G., and Meijer, W. G. (1998) Something from almost nothing: Carbon dioxide fixation in chemoautotrophs. Annu. Rev. Microbiol. 52, 191-230 (Pubitemid 28481192)
-
(1998)
Annual Review of Microbiology
, vol.52
, pp. 191-230
-
-
Shively, J.M.1
Van Keulen, G.2
Meijer, W.G.3
-
3
-
-
34547636898
-
New roads lead to Rubisco in Archaebacteria
-
DOI 10.1002/bies.20616
-
Mueller-Cajar, O., and Badger, M. (2007) New roads lead to Rubisco in archaebacteria. BioEssays 29, 722-724 (Pubitemid 47204277)
-
(2007)
BioEssays
, vol.29
, Issue.8
, pp. 722-724
-
-
Mueller-Cajar, O.1
Badger, M.R.2
-
4
-
-
0033582465
-
Presence of a structurally novel type ribulose-bisphosphate carboxylase/oxygenase in the hyperthermophilic archaeon, Pyrococcus kodakaraensis KOD1
-
Ezaki, S., Maeda, N., Kishimoto, T., Atomi, H., and Imanaka, T. (1999) Presence of a structurally novel type ribulose-bisphosphate carboxylase/ oxygenase in the hyperthermophilic archaeon, Pyrococcus kodakaraensis KOD1. J. Biol. Chem. 274, 5078-5082
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 5078-5082
-
-
Ezaki, S.1
Maeda, N.2
Kishimoto, T.3
Atomi, H.4
Imanaka, T.5
-
5
-
-
33847157932
-
Archaeal type III RuBisCOs function in a pathway for AMP metabolism
-
DOI 10.1126/science.1135999
-
Sato, T., Atomi, H., and Imanaka, T. (2007) Archaeal type III RuBisCOs function in a pathway for AMP metabolism. Science 315, 1003-1006 (Pubitemid 46281191)
-
(2007)
Science
, vol.315
, Issue.5814
, pp. 1003-1006
-
-
Sato, T.1
Atomi, H.2
Imanaka, T.3
-
6
-
-
0032584201
-
Archaeal translation initiation revisited: The initiation factor 2 and eukaryotic initiation factor 2B α-β-δ subunit families
-
DOI 10.1073/pnas.95.7.3726
-
Kyrpides, N. C., and Woese, C. R. (1998) Archaeal translation initiation revisited: The initiation factor 2 and eukaryotic initiation factor 2B α-β-δ subunit families. Proc. Natl. Acad. Sci. U.S.A. 95, 3726-3730 (Pubitemid 28173196)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.7
, pp. 3726-3730
-
-
Kyrpides, N.C.1
Woese, C.R.2
-
7
-
-
0028582139
-
The guanine nucleotide-exchange factor, eIF-2B
-
Price, N., and Proud, C. (1994) The guanine nucleotide-exchange factor, eIF-2B. Biochimie 76, 748-760
-
(1994)
Biochimie
, vol.76
, pp. 748-760
-
-
Price, N.1
Proud, C.2
-
8
-
-
0141993683
-
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO
-
DOI 10.1126/science.1086997
-
Ashida, H., Saito, Y., Kojima, C., Kobayashi, K., Ogasawara, N., and Yokota, A. (2003) A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO. Science 302, 286-290 (Pubitemid 37248759)
-
(2003)
Science
, vol.302
, Issue.5643
, pp. 286-290
-
-
Ashida, H.1
Saito, Y.2
Kojima, C.3
Kobayashi, K.4
Ogasawara, N.5
Yokota, A.6
-
9
-
-
36148948989
-
Enzymatic characterization of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis
-
DOI 10.1271/bbb.70209
-
Saito, Y., Ashida, H., Kojima, C., Tamura, H., Matsumura, H., Kai, Y., and Yokota, A. (2007) Enzymatic characterization of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis. Biosci. Biotechnol. Biochem. 71, 2021-2028 (Pubitemid 350113139)
-
(2007)
Bioscience, Biotechnology and Biochemistry
, vol.71
, Issue.8
, pp. 2021-2028
-
-
Saito, Y.1
Ashida, H.2
Kojima, C.3
Tamura, H.4
Matsumura, H.5
Kai, Y.6
Yokota, A.7
-
10
-
-
70449257873
-
The mechanism of the triosephosphate isomerase reaction
-
Rieder, S. V., and Rose, I. A. (1959) The mechanism of the triosephosphate isomerase reaction. J. Biol. Chem. 234, 1007-1010
-
(1959)
J. Biol. Chem.
, vol.234
, pp. 1007-1010
-
-
Rieder, S.V.1
Rose, I.A.2
-
11
-
-
0001444830
-
On the mechanism of action of phosphoglucose isomerase and phosphomannose isomerase
-
Topper, Y. J. (1957) On the mechanism of action of phosphoglucose isomerase and phosphomannose isomerase. J. Biol. Chem. 225, 419-425
-
(1957)
J. Biol. Chem.
, vol.225
, pp. 419-425
-
-
Topper, Y.J.1
-
12
-
-
0037224131
-
Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle
-
DOI 10.1016/S0969-2126(02)00933-4, PII S0969212602009334
-
Zhang, R., Andersson, C. E., Savchenko, A., Skarina, T., Evdokimova, E., Beasley, S., Arrowsmith, C. H., Edwards, A. M., Joachimiak, A., and Mowbray, S. L. (2003) Structure of Escherichia coli ribose-5-phosphate isomerase. A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Structure 11, 31-42 (Pubitemid 36074966)
-
(2003)
Structure
, vol.11
, Issue.1
, pp. 31-42
-
-
Zhang, R.-G.1
Andersson, C.E.2
Savchenko, A.3
Skarina, T.4
Evdokimova, E.5
Beasley, S.6
Arrowsmith, C.H.7
Edwards, A.M.8
Joachimiak, A.9
Mowbray, S.L.10
-
13
-
-
0025974544
-
A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 Å Streptomyces rubiginosus structures with xylitol and D-xylose
-
Whitlow, M., Howard, A. J., Finzel, B. C., Poulos, T. L., Winborne, E., and Gilliland, G. L. (1991) A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 Å Streptomyces rubiginosus structures with xylitol and D-xylose. Proteins 9, 153-173
-
(1991)
Proteins
, vol.9
, pp. 153-173
-
-
Whitlow, M.1
Howard, A.J.2
Finzel, B.C.3
Poulos, T.L.4
Winborne, E.5
Gilliland, G.L.6
-
14
-
-
0015935336
-
Catalytic reactions of phosphoglucose isomerase with cyclic forms of glucose 6-phosphate and fructose 6-phosphate
-
Schray, K. J., Benkovic, S. J., Benkovic, P. A., and Rose, I. A. (1973) Catalytic reactions of phosphoglucose isomerase with cyclic forms of glucose 6-phosphate and fructose 6-phosphate. J. Biol. Chem. 248, 2219-2224
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 2219-2224
-
-
Schray, K.J.1
Benkovic, S.J.2
Benkovic, P.A.3
Rose, I.A.4
-
15
-
-
1542782483
-
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi)
-
Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., and Miyano, M. (2003) Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi). J. Biol. Chem. 278, 49183-49190
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 49183-49190
-
-
Hamada, K.1
Ago, H.2
Sugahara, M.3
Nodake, Y.4
Kuramitsu, S.5
Miyano, M.6
-
16
-
-
0025320312
-
Mechanism for aldoseketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift
-
Collyer, C. A., Henrick, K., and Blow, D. M. (1990) Mechanism for aldoseketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift. J. Mol. Biol. 212, 211-235
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 211-235
-
-
Collyer, C.A.1
Henrick, K.2
Blow, D.M.3
-
17
-
-
37549009871
-
Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism
-
Tamura, H., Saito, Y., Ashida, H., Inoue, T., Kai, Y., Yokota, A., and Matsumura, H. (2008) Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism. Protein Sci. 17, 126-135
-
(2008)
Protein Sci.
, vol.17
, pp. 126-135
-
-
Tamura, H.1
Saito, Y.2
Ashida, H.3
Inoue, T.4
Kai, Y.5
Yokota, A.6
Matsumura, H.7
-
18
-
-
0037200077
-
The unique pentagonal structure of an Archaeal Rubisco is essential for its high thermostability
-
DOI 10.1074/jbc.M203117200
-
Maeda, N., Kanai, T., Atomi, H., and Imanaka, T. (2002) The unique pentagonal structure of an archaeal Rubisco is essential for its high thermostability. J. Biol. Chem. 277, 31656-31662 (Pubitemid 34968969)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.35
, pp. 31656-31662
-
-
Maeda, N.1
Kanai, T.2
Atomi, H.3
Imanaka, T.4
-
19
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
21
-
-
0033896691
-
Maximum-likelihood density modification
-
Terwilliger, T. C. (2000) Maximum-likelihood density modification. Acta Crystallogr. D 56, 965-972
-
(2000)
Acta Crystallogr. D
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
22
-
-
0037237545
-
Automated main-chain model building by template matching and iterative fragment extension
-
Terwilliger, T. C. (2003) Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr. D 59, 38-44
-
(2003)
Acta Crystallogr. D
, vol.59
, pp. 38-44
-
-
Terwilliger, T.C.1
-
24
-
-
3543012707
-
Crystallography &NMRsystem: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography &NMRsystem: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
25
-
-
37049014272
-
Version 1.2 of the Crystallography and NMR system
-
Brunger, A. T. (2007) Version 1.2 of the Crystallography and NMR system. Nat. Protoc. 2, 2728-2733
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
26
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
DOI 10.1006/jmbi.1993.1489
-
Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233, 123-138 (Pubitemid 23288916)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
27
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Holm, L.1
Rosenström, P.2
-
28
-
-
4344584575
-
Crystal structure of yeast Ypr118w, a methylthioribose-1-phosphate isomerase related to regulatory eIF2B subunits
-
DOI 10.1074/jbc.M404458200
-
Bumann, M., Djafarzadeh, S., Oberholzer, A. E., Bigler, P., Altmann, M., Trachsel, H., and Baumann, U. (2004) Crystal structure of yeast Ypr118w, a methylthioribose-1-phosphate isomerase related to regulatory eIF2B subunits. J. Biol. Chem. 279, 37087-37094 (Pubitemid 39129059)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.35
, pp. 37087-37094
-
-
Bumann, M.1
Djafarzadeh, S.2
Oberholzer, A.E.3
Bigler, P.4
Altmann, M.5
Trachsel, H.6
Baumann, U.7
-
29
-
-
2942592401
-
Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: A proposed structure of the regulatory subcomplex of eukaryotic IF2B
-
DOI 10.1016/j.bbrc.2004.05.045, PII S0006291X04010150
-
Kakuta, Y., Tahara, M., Maetani, S., Yao, M., Tanaka, I., and Kimura, M. (2004) Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B. Biochem. Biophys. Res. Commun. 319, 725-732 (Pubitemid 38739381)
-
(2004)
Biochemical and Biophysical Research Communications
, vol.319
, Issue.3
, pp. 725-732
-
-
Kakuta, Y.1
Tahara, M.2
Maetani, S.3
Yao, M.4
Tanaka, I.5
Kimura, M.6
-
30
-
-
0017881332
-
The α-helix dipole and the properties of proteins
-
Hol, W. G., van Duijnen, P. T., and Berendsen, H. J. (1978) The α-helix dipole and the properties of proteins. Nature 273, 443-446
-
(1978)
Nature
, vol.273
, pp. 443-446
-
-
Hol, W.G.1
Van Duijnen, P.T.2
Berendsen, H.J.3
-
31
-
-
0032972775
-
Structural motif of phosphate-binding site common to various protein superfamilies: All-against-all structural comparison of protein-mononucleotide complexes
-
Kinoshita, K., Sadanami, K., Kidera, A., and Go, N. (1999) Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein-mononucleotide complexes. Protein Eng. 12, 11-14 (Pubitemid 29050536)
-
(1999)
Protein Engineering
, vol.12
, Issue.1
, pp. 11-14
-
-
Kinoshita, K.1
Sadanami, K.2
Kidera, A.3
Go, N.4
-
32
-
-
0030446158
-
Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase
-
DOI 10.1021/bi9617724
-
Kortemme, T., Darby, N. J., and Creighton, T. E. (1996) Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein-disulfide isomerase. Biochemistry 35, 14503-14511 (Pubitemid 26423709)
-
(1996)
Biochemistry
, vol.35
, Issue.46
, pp. 14503-14511
-
-
Kortemme, T.1
Darby, N.J.2
Creighton, T.E.3
-
34
-
-
10344226653
-
a values in creatine kinase and α1-antitrypsin
-
a values in creatine kinase and α1-antitrypsin. Proteins 57, 799-803
-
(2004)
Proteins
, vol.57
, pp. 799-803
-
-
Naor, M.M.1
Jensen, J.H.2
-
37
-
-
14044268187
-
2O
-
DOI 10.1021/bi047954c
-
O'Donoghue, A. C., Amyes, T. L., and Richard, J. P. (2005) Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of (R)-glyceraldehyde 3-phosphate in D2O. Biochemistry 44, 2610-2621 (Pubitemid 40279565)
-
(2005)
Biochemistry
, vol.44
, Issue.7
, pp. 2610-2621
-
-
O'Donoghue, A.C.1
Amyes, T.L.2
Richard, J.P.3
-
38
-
-
14044276979
-
2O
-
DOI 10.1021/bi047953k
-
O'Donoghue, A. C., Amyes, T. L., and Richard, J. P. (2005) Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of dihydroxyacetone phosphate in D2O. Biochemistry 44, 2622-2631 (Pubitemid 40279566)
-
(2005)
Biochemistry
, vol.44
, Issue.7
, pp. 2622-2631
-
-
O'Donoghue, A.C.1
Amyes, T.L.2
Richard, J.P.3
-
39
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041 (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
40
-
-
36448991500
-
ClustalW and ClustalX
-
version 2.0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., and Higgins, D. G. (2007) ClustalW and ClustalX version 2.0. Bioinformatics 23, 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
41
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
DOI 10.1093/bioinformatics/15.4.305
-
Gouet, P., Courcelle, E., Stuart, D. I., and Métoz, F. (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15, 305-308 (Pubitemid 29213756)
-
(1999)
Bioinformatics
, vol.15
, Issue.4
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
|