Fluorescence in situ hybridization for microRNA detection in archived oral cancer tissues

Journal of Oncology

Volumn , Issue , 2012, Pages

  Shi, Zonggao ^a   Johnson, Jeffrey J ^a   Stack, M Sharon ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN; DIGOXIGENIN; LOCKED NUCLEIC ACID; MICRORNA; OLIGONUCLEOTIDE;

ARTICLE; CANCER DIAGNOSIS; CANCER PROGNOSIS; CANCER TISSUE; CARCINOGENESIS; CLINICAL ARTICLE; CONTROLLED STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; MOUTH SQUAMOUS CELL CARCINOMA;

EID: 84862287053     PISSN: 16878450     EISSN: 16878469     Source Type: Journal    
DOI: 10.1155/2012/903581     Document Type: Article

References (25)

1. Nilsen T. W., Mechanisms of microRNA-mediated gene regulation in animal cells Trends in Genetics 2007 23 5 243 249 (Pubitemid 46628981)
2. Long D., Lee R., Williams P., Chan C. Y., Ambros V., Ding Y., Potent effect of target structure on microRNA function Nature Structural and Molecular Biology 2007 14 4 287 294 (Pubitemid 46608348)
3. Gaur A., Jewell D. A., Liang Y., Ridzon D., Moore J. H., Chen C., Ambros V. R., Israel M. A., Characterization of microRNA expression levels and their biological correlates in human cancer cell lines Cancer Research 2007 67 6 2456 2468 (Pubitemid 46548930)
4. Zhang L., Yang N., Coukos G., MicroRNA in human cancer: one step forward in diagnosis and treatment Advances in Experimental Medicine and Biology 2008 622 69 78
5. Shen J., Liu N., Todd W., Diagnosis of lung cancer in individuals with solitary pulmonary nodules by plasma microRNA biomarkers BMC Cancer 2011 11 374
6. Thompson R. C., Deo M., Turner D. L., Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probes Methods 2007 43 2 153 161 (Pubitemid 47419362)
7. John H. A., Birnstiel M. L., Jones K. W., RNA-DNA hybrids at the cytological level Nature 1969 223 5206 582 587
8. Pardue M. L., Gall J. G., Molecular hybridization of radioactive DNA to the DNA of cytological preparations Proceedings of the National Academy of Sciences of the United States of America 1969 64 2 600 604
9. Ghosh S., Koblinski J., Johnson J., Liu Y., Ericsson A., Davis J. W., Shi Z., Ravosa M. J., Crawford S., Frazier S., Stack M. S., Urinary-type plasminogen activator receptor/ 3 1 integrin signaling, altered gene expression, and oral tumor progression Molecular Cancer Research 2010 8 2 145 158
10. Klopfleisch R., Weiss A. T., Gruber A. D., Excavation of a buried treasureDNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues Histology and Histopathology 2011 26 6 797 810
11. Liu A., Tetzlaff M. T., VanBelle P., Elder D., Feldman M., Tobias J. W., Sepulveda A. R., Xu X., MicroRNA expression profiling outperforms mRNA expression profiling in formalin-fixed paraffin-embedded tissues International Journal of Clinical and Experimental Pathology 2009 2 6 519 527
12. Glud M., Klausen M., Gniadecki R., Rossing M., Hastrup N., Nielsen F. C., Drzewiecki K. T., MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling Journal of Investigative Dermatology 2009 129 5 1219 1224
13. Wang D., Zhu L., Jiang D., Ma X., Zhou Y., Cheng J., Direct detection of 16S rRna using oligonucleotide microarrays assisted by base stacking hybridization and tyramide signal amplification Journal of Biochemical and Biophysical Methods 2004 59 2 109 120 (Pubitemid 38639916)
14. Weir E. E., Pretlow T. G., Pitts A., Williams E. E., A more sensitive and specific histochemical peroxidase stain for the localization of cellular antigen by the enzyme antibody conjugate method Journal of Histochemistry and Cytochemistry 1974 22 12 1135 1140
15. Muhlegger K., Huber E., von der Eltz H., Ruger R., Kessler C., Non-radioactive labeling and detection of nucleic acids. IV. Synthesis and properties of digoxigenin-modified 2′; -deoxyuridine- 5′; -triphosphates and a photoactivatable analog of digoxigenin (photodigoxigenin) Biological Chemistry Hoppe-Seyler 1990 371 10 953 965 (Pubitemid 20337932)
16. Arnold N., Seibl R., Kessler C., Wienberg J., Nonradioactive in situ hybridization with digoxigenin labeled DNA probes Biotechnic and Histochemistry 1992 67 3 59 67
17. Darby I. A., Bisucci T., Desmoulire A., Hewitson T. D., In situ hybridization using cRNA probes: isotopic and nonisotopic detection methods Methods in Molecular Biology 2006 326 17 31
18. Vester B., Wengel J., LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA Biochemistry 2004 43 42 13233 13241 (Pubitemid 39391124)
19. Stenvang J., Silahtaroglu A. N., Lindow M., Elmen J., Kauppinen S., The utility of LNA in microRNA-based cancer diagnostics and therapeutics Seminars in Cancer Biology 2008 18 2 89 102
20. McKay J. A., Murray G. I., Keith W. N., McLeod H. L., Amplification of fluorescent in situ hybridisation signals in formalin fixed paraffin wax embedded sections of colon tumour using biotinylated tyramide Journal of Clinical Pathology 1997 50 6 322 325 (Pubitemid 28057243)
21. Bobrow M. N., Litt G. J., Shaughnessy K. J., Mayer P. C., Conlon J., The use of catalyzed reporter deposition as a means of signal amplification in a variety of formats Journal of Immunological Methods 1992 150 1-2 145 149
22. Schmidt B. F., Chao J., Zhu Z., DeBiasio R. L., Fisher G., Signal amplification in the detection of single-copy DNA and RNA by enzyme-catalyzed deposition (CARD) of the novel fluorescent reporter substrate Cy3.29-tyramide Journal of Histochemistry and Cytochemistry 1997 45 3 365 373 (Pubitemid 27120592)
23. Urdea M. S., Branched DNA signal amplification: does bDNA represent post-PCR amplification technology? Bio/Technology 1994 12 9 926 928
24. Collins M. L., Irvine B., Tyner D., Fine E., Zayati C., Chang C. A., Horn T., Ahle D., Detmer J., Shen L. P., Kolberg J., Bushnell S., Urdea M. S., Ho D. D., A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml Nucleic Acids Research 1997 25 15 2979 2984 (Pubitemid 27331389)
25. Andreasen D., Fog J. U., Biggs W., Salomon J., Dahslveen I. K., Baker A., Mouritzen P., Improved microRNA quantification in total RNA from clinical samples Methods 2010 50 4 S6 S9