Utility of retrotransposon-derived marker systems for differentiation of presumed clones of the apricot cultivar Velkopavlovická

Scientia Horticulturae

Volumn 143, Issue , 2012, Pages 1-6

  Baránek, Miroslav ^a   Meszáros, Martin ^a   Sochorová, Jana ^a   Čechová, Jana ^a   Raddová, Jana ^a  

^a MENDEL UNIVERSITY IN BRNO   (Czech Republic)

Author keywords

AFLP; Apricot; Clonal differentiation; IPBS; Retrotransposon; SSAP

Indexed keywords

CHEMICAL BINDING; CLONE; CULTIVAR; DNA FINGERPRINTING; FRUIT; GENETIC DIFFERENTIATION; GENETIC MARKER; HYPOTHESIS TESTING; MUTATION; PHENOTYPE; POLYMORPHISM;

CZECH REPUBLIC;

PRUNUS ARMENIACA;

EID: 84862285174     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.05.022     Document Type: Article

References (20)

1. Aranzana M.J., García-Mas J., Carbó J., Arús P. Development and variability of microsatellite markers in peach. Plant Breed. 2002, 121:87-92.
2. Asins M.J., Monforte A.J., Mestre P.F., Carbonell E.A. Citrus and Prunus copia-like retrotransposons. Theor. Appl. Genet. 1999, 99:503-510.
3. Baneh H.D., Mohammadi S.A., Mahmoudzadeh H., de Mattia F., Labra M. Analysis of SSR and AFLP markers to detect genetic diversity among selected clones of grapevine (Vitis vinifera L.) cv. Keshmeshi. S. Afr. J. Enol. Viticult. 2009, 30:38-42.
4. Baránek M., Raddová J., KřiŽan B., Pidra M. Genetic changes in grapevine genome after stress induced by in vitro cultivation, thermotherapy and virus infection, as revealed by AFLP. Genet. Mol. Biol. 2009, 32:834-839.
5. Breto M.P., Ruiz C., Pina J.A. The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Mol. Phylogenet. Evol. 2001, 21:285-293.
6. Chroboková E., Raddová J., Vachůn M., KrŠka B., Pidra M. An analysis of apricot cultivars by random amplified polymorphic DNA and microsatellite primers. Hort. Sci. (Prague) 2011, 38:125-133.
7. Cipriani G., Lot G., Huang H.G., Marrazzo M.T., Peterlunger E., Testolin R. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L.) Basch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 1999, 99:65-72.
8. Filippetti I., Intrieri C., Centinari M., Bucchetti B., Pastore C. Molecular characterization of officially registered Sangiovese clones and of other Sangiovese-like biotypes in Tuscany, Corsica and Emilia-Romagna. Vitis 2005, 44:167-172.
9. Hadonou A.M., Gittins J.R., Hiles E.R., James D.J. Two apple repetitive sequences elements: characterisation and potential use as genetic markers. Euphytica 2003, 131:177-187.
10. Hagen L.S., Chaib J., Fady B., Decroocq V., Bouchet J.P., Lambert P., Audergon J.M. Genomic and cDNA microsatellites from apricot (Prunus armeniaca L.). Mol. Ecol. Notes 2004, 4:742-745.
11. Kalendar R., Antonius K., Smýkal P., Schulman A.H. iPBS: a universal method for DNA fingerprinting and retrotransposon isolation. Theor. Appl. Genet. 2010, 121:1419-1430.
12. Konradi J., Blaich R., Forneck A. Genetic variation among clones and sports of 'Pinot noir' (Vitis vinifera L.). Eur. J. Hortic. Sci. 2007, 72:275-279.
13. Labra M., Imazio S., Grassi F., Rossoni M., Sala F. Vine-1 retrotransposon-based sequence-specific amplified polymorphism for Vitis vinifera L. genotyping. Plant Breed. 2004, 123:180-185.
14. Lopes M.S., Sefc K.M., Laimer M., Machado A.D.C. Identification of microsatellite loci in apricot. Mol. Ecol. Notes 2002, 2:24-26.
15. Messina R., Lain O., Marrazzo M.T., Cipriani G., Testolin R. New set of microsatellite loci isolated in apricot. Mol. Ecol. Notes 2004, 4:432-434.
16. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:5269-5273.
17. Schulman A.H., Flavell A.J., Ellis T.H. The application of LTR retrotransposons as molecular markers in plants. Methods Mol. Biol. 2004, 260:145-173.
18. Sensi E., Vignani R., Scali M., Masi E., Cresti M. DNA fingerprinting and genetic relatedness among cultivated varieties of Olea europaea L. estimated by AFLP analysis. Sci. Hortic. 2003, 97:379-388.
19. Wang F., Tong Z.G., Sun J., Shen Y.Y., Zhou J., Gao Z.H., Zhang Z. Genome-wide detection of Ty1-copia and Ty3-gypsy group retrotransposons in Japanese apricot (Prunus mume Sieb. et Zucc.). Afr. J. Biotechnol. 2010, 9:8583-8596.
20. Wegscheider E., Benjak A., Forneck A. Clonal variation in Pinot noir revealed by S-SAP involving universal retrotransposon-based sequences. Am. J. Enol. Viticult. 2009, 60:104-109.