메뉴 건너뛰기




Volumn 21, Issue 8, 2012, Pages 3518-3530

3D+t morphological processing: Applications to embryogenesis image analysis

Author keywords

3D+t mathematical morphology; in vivo light microscopy; spatio temporal structuring elements; zebrafish embryogenesis

Indexed keywords

DATA SETS; HUMAN INTERVENTION; IMAGE SEQUENCE; IN-VIVO; MICROSCOPY TECHNIQUE; MORPHOLOGICAL PROCESSING; SEMI-AUTOMATIC ALGORITHMS; SPATIO-TEMPORAL; STRUCTURING ELEMENT; TEMPORAL DIMENSIONS; ZEBRAFISH;

EID: 84862261702     PISSN: 10577149     EISSN: None     Source Type: Journal    
DOI: 10.1109/TIP.2012.2197007     Document Type: Article
Times cited : (15)

References (54)
  • 1
    • 66649123370 scopus 로고    scopus 로고
    • Microscopic marvels: Seeing the system
    • A. Abbott, "Microscopic marvels: Seeing the system," Nature, vol. 459, no. 7247, pp. 630-631, 2009.
    • (2009) Nature , vol.459 , Issue.7247 , pp. 630-631
    • Abbott, A.1
  • 3
    • 82455199079 scopus 로고    scopus 로고
    • Image analysis for understanding embryo development: A bridge from microscopy to biological insights
    • Sep
    • M. A. Luengo-Oroz, M. J. Ledesma-Carbayo, N. Peyriéras, and A. Santos, "Image analysis for understanding embryo development: A bridge from microscopy to biological insights," Current Opinion Genet. Develop., vol. 21, no. 5, pp. 630-637, Sep. 2011.
    • (2011) Current Opinion Genet. Develop , vol.21 , Issue.5 , pp. 630-637
    • Luengo-Oroz, M.A.1    Ledesma-Carbayo, M.J.2    Peyriéras, N.3    Santos, A.4
  • 5
    • 0036527963 scopus 로고    scopus 로고
    • Zebrafish as a cancer model system
    • DOI 10.1016/S1535-6108(02)00052-1
    • J. Amatruda, J. L. Shepard, H. M. Stern, and L. I. Zon, "Zebrafish as a cancer model system," Cancer Cell, vol. 1, no. 3, pp. 229-231, 2002. (Pubitemid 41039146)
    • (2002) Cancer Cell , vol.1 , Issue.3 , pp. 229-231
    • Amatruda, J.F.1    Shepard, J.L.2    Stern, H.M.3    Zon, L.I.4
  • 6
    • 0242580739 scopus 로고    scopus 로고
    • Digitizing life at the level of the cell: High-performance laser-scanning microscopy and image analysis for in toto imaging of development
    • DOI 10.1016/j.mod.2003.07.005
    • S. Megason and S. E. Fraser, "Digitizing life at the level of the cell: High-performance laser-scanning microscopy and image analysis for in toto imaging of development," Mech. Develop., vol. 120, no. 11, pp. 1407-1420, 2003. (Pubitemid 37421171)
    • (2003) Mechanisms of Development , vol.120 , Issue.11 , pp. 1407-1420
    • Megason, S.G.1    Fraser, S.E.2
  • 7
    • 56449123775 scopus 로고    scopus 로고
    • Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy
    • P. Keller, A. D. Schmidt, J. Wittbrodt, and E. H. K. Stelzer, "Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy," Science, vol. 322, no. 5904, pp. 1065-1069, 2008.
    • (2008) Science , vol.322 , Issue.5904 , pp. 1065-1069
    • Keller, P.1    Schmidt, A.D.2    Wittbrodt, J.3    Stelzer, E.H.K.4
  • 10
    • 0025342635 scopus 로고
    • Two-photon laser scanning fluorescence microscopy
    • W. Denk and J. H. Strickler, "Two-photon laser scanning fluorescence microscopy," Science, vol. 248, no. 4951, pp. 73-76, 1990.
    • (1990) Science , vol.248 , Issue.4951 , pp. 73-76
    • Denk, W.1    Strickler, J.H.2
  • 11
    • 1942519262 scopus 로고    scopus 로고
    • Higher harmonic generation microscopy for developmental biology
    • C. K. Sun, S. W. Chu, S. Y. Chen, T. H. Tsai, T. M. Liu, C. Y. Lin, and H. J. Tsai, "Higher harmonic generation microscopy for developmental biology," J. Struct. Biol., vol. 147, no. 1, pp. 19-30, 2004.
    • (2004) J. Struct. Biol , vol.147 , Issue.1 , pp. 19-30
    • Sun, C.K.1    Chu, S.W.2    Chen, S.Y.3    Tsai, T.H.4    Liu, T.M.5    Lin, C.Y.6    Tsai, H.J.7
  • 12
    • 85032751638 scopus 로고    scopus 로고
    • Tracking in molecular bioimaging
    • May
    • E. Meijering, I. Smal, and G. Danuser, "Tracking in molecular bioimaging," IEEE Signal Process. Mag., vol. 23, no. 3, pp. 46-53, May 2006.
    • (2006) IEEE Signal Process. Mag , vol.23 , Issue.3 , pp. 46-53
    • Meijering, E.1    Smal, I.2    Danuser, G.3
  • 13
    • 77955572596 scopus 로고    scopus 로고
    • 3-D early embryogenesis image filtering by nonlinear partial differential equations
    • Apr
    • Z. Krivá, K. Mikula, N. Peyriéras, B. Rizzi, A. Sarti, and O. Stasová, "3-D early embryogenesis image filtering by nonlinear partial differential equations," Med. Image Anal., vol. 14, no. 4, pp. 510-526, Apr. 2010.
    • (2010) Med. Image Anal , vol.14 , Issue.4 , pp. 510-526
    • Krivá, Z.1    Mikula, K.2    Peyriéras, N.3    Rizzi, B.4    Sarti, A.5    Stasová, O.6
  • 14
    • 20644455532 scopus 로고    scopus 로고
    • Image restoration for confocal microscopy: Improving the limits of deconvolution, with application to the visualization of the mammalian hearing organ
    • J. B. de Monvel, S. L. Calvez, and M. Ulfendahl, "Image restoration for confocal microscopy: Improving the limits of deconvolution, with application to the visualization of the mammalian hearing organ," Biophys. J., vol. 80, no. 5, pp. 2455-2470, 2001. (Pubitemid 32402007)
    • (2001) Biophysical Journal , vol.80 , Issue.5 , pp. 2455-2470
    • De Monvel, J.B.1    Le Calvez, S.2    Ulfendahl, M.3
  • 16
    • 0036721668 scopus 로고    scopus 로고
    • Extraction of spots in biological images using multiscale products
    • DOI 10.1016/S0031-3203(01)00127-3, PII S0031320301001273
    • J. Olivo-Marin, "Extraction of spots in biological images using multiscale products," Pattern Recognit., vol. 35, no. 9, pp. 1989-1996, Sep. 2002. (Pubitemid 34776311)
    • (2002) Pattern Recognition , vol.35 , Issue.9 , pp. 1989-1996
    • Olivo-Marin, J.-C.1
  • 17
    • 43649100336 scopus 로고    scopus 로고
    • Counting number of cells and cell segmentation using advection-diffusion equations
    • P. Frolkovic, K. Mikula, N. Peyriéras, and A. Sarti, "Counting number of cells and cell segmentation using advection-diffusion equations," Kybernetika-Praha, vol. 43, no. 6, pp. 817-829, 2007.
    • (2007) Kybernetika-Praha , vol.43 , Issue.6 , pp. 817-829
    • Frolkovic, P.1    Mikula, K.2    Peyriéras, N.3    Sarti, A.4
  • 20
    • 26444456033 scopus 로고    scopus 로고
    • Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces
    • DOI 10.1109/TIP.2005.852790
    • A. Dufour, V. Shinin, S. Tajbakhsh, N. Guillen-Aghion, J. C. Olivo- Marin, and C. Zimmer, "Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces," IEEE Trans. Image Process., vol. 14, no. 9, pp. 1396-1410, Sep. 2005. (Pubitemid 41430901)
    • (2005) IEEE Transactions on Image Processing , vol.14 , Issue.9 , pp. 1396-1410
    • Dufour, A.1    Shinin, V.2    Tajbakhsh, S.3    Guillen-Aghion, N.4    Olivo-Marin, J.-C.5    Zimmer, C.6
  • 21
    • 0036826342 scopus 로고    scopus 로고
    • Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: A tool for cell-based drug testing
    • Oct
    • C. Zimmer, E. Labruyere, V. Meas-Yedid, N. Guillen, and J.-C. Olivo- Marin, "Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: A tool for cell-based drug testing," IEEE Trans. Med. Imag., vol. 21, no. 10, pp. 1212-1221, Oct. 2002.
    • (2002) IEEE Trans. Med. Imag , vol.21 , Issue.10 , pp. 1212-1221
    • Zimmer, C.1    Labruyere, E.2    Meas-Yedid, V.3    Guillen, N.4    Olivo- Marin, J.-C.5
  • 22
    • 1942470024 scopus 로고    scopus 로고
    • Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images
    • E. Meijering, M. Jacob, J. C. Sarria, P. Steiner, H. Hirling, and M. Unser, "Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images," Cytometry A, vol. 58, no. 2, pp. 167-176, 2004. (Pubitemid 38509178)
    • (2004) Cytometry Part A , vol.58 , Issue.2 , pp. 167-176
    • Meijering, E.1    Jacob, M.2    Sarria, J.-C.F.3    Steiner, P.4    Hirling, H.5    Unser, M.6
  • 26
    • 70349109216 scopus 로고    scopus 로고
    • Quantitative imaging of collective cell migration during drosophila gastrulation: Multiphoton microscopy and computational analysis
    • W. Supatto, A. McMahon, S. E. Fraser, and A. Stathopoulos, "Quantitative imaging of collective cell migration during drosophila gastrulation: Multiphoton microscopy and computational analysis," Nature Protocols, vol. 4, no. 10, pp. 1397-1412, 2009.
    • (2009) Nature Protocols , vol.4 , Issue.10 , pp. 1397-1412
    • Supatto, W.1    McMahon, A.2    Fraser, S.E.3    Stathopoulos, A.4
  • 27
    • 26444459812 scopus 로고    scopus 로고
    • Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume
    • DOI 10.1109/TIP.2005.852794
    • S. Bonneau, M. Dahan, and L. D. Cohen, "Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume," IEEE Trans. Image Process., vol. 14, no. 9, pp. 1384-1395, Sep. 2005. (Pubitemid 41430900)
    • (2005) IEEE Transactions on Image Processing , vol.14 , Issue.9 , pp. 1384-1395
    • Bonneau, S.1    Dahan, M.2    Cohen, L.D.3
  • 28
    • 40449102461 scopus 로고    scopus 로고
    • 4-D segmentation of cardiac data using active surfaces with spatiotemporal shape priors
    • Jan
    • A. Abufadel, T. Yezzi, and R. W. Schafer, "4-D segmentation of cardiac data using active surfaces with spatiotemporal shape priors," Appl. Pattern Recognit., vol. 91, pp. 77-100, Jan. 2008.
    • (2008) Appl. Pattern Recognit , vol.91 , pp. 77-100
    • Abufadel, A.1    Yezzi, T.2    Schafer, R.W.3
  • 29
    • 10844239822 scopus 로고    scopus 로고
    • 4D deformable models with temporal constraints: Application to 4D cardiac image segmentation
    • DOI 10.1016/j.media.2004.06.025, PII S1361841504000623
    • J. Montagnat and H. Delingette, "4-D deformable models with temporal constraints: Application to 4-D cardiac image segmentation," Med. Image Anal., vol. 9, no. 1, pp. 87-100, 2005. (Pubitemid 40003896)
    • (2005) Medical Image Analysis , vol.9 , Issue.1 , pp. 87-100
    • Montagnat, J.1    Delingette, H.2
  • 33
    • 0018297760 scopus 로고
    • Iterative image transformations for an automatic screening of cervical smears
    • F. Meyer, "Iterative image transformations for an automatic screening of cervical smears," J. Histochem. Cytochem., vol. 27, no. 1, pp. 128-135, 1979.
    • (1979) J. Histochem. Cytochem , vol.27 , Issue.1 , pp. 128-135
    • Meyer, F.1
  • 34
    • 34249002246 scopus 로고    scopus 로고
    • Application of mathematical morphology to the quantification of in vitro endothelial cell organization into tubular-like structures
    • DOI 10.1170/T784
    • J. Angulo and S. Matou, "Application of mathematical morphology to the quantification of in vitro endothelial cell organization into tubularlike structures," Cellular Molecular Biol., vol. 53, no. 2, pp. 22-35, 2007. (Pubitemid 46799957)
    • (2007) Cellular and Molecular Biology , vol.53 , Issue.2 , pp. 22-35
    • Angulo, J.1    Matou, S.2
  • 35
    • 66149185683 scopus 로고    scopus 로고
    • Cyclic mathematical morphology in polar-logarithmic representation
    • May
    • M. Luengo-Oroz and J. Angulo, "Cyclic mathematical morphology in polar-logarithmic representation," IEEE Trans. Image Process., vol. 18, no. 5, pp. 1090-1096, May 2009.
    • (2009) IEEE Trans. Image Process , vol.18 , Issue.5 , pp. 1090-1096
    • Luengo-Oroz, M.1    Angulo, J.2
  • 36
    • 0348134935 scopus 로고    scopus 로고
    • A Hybrid 3D Watershed Algorithm Incorporating Gradient Cues and Object Models for Automatic Segmentation of Nuclei in Confocal Image Stacks
    • G. Lin, U. Adiga, K. Olson, J. F. Guzowski, C. A. Barnes, and B. Roysam, "A hybrid 3-D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks," Cytometry A, vol. 56, no. 1, pp. 23-36, 2003. (Pubitemid 37522503)
    • (2003) Cytometry Part A , vol.56 , Issue.1 , pp. 23-36
    • Lin, G.1    Adiga, U.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 38
    • 77955230548 scopus 로고    scopus 로고
    • 4-D morphological segmentation and the MICCAI LV-segmentation grand challenge
    • L. Marak, J. Cousty, L. Najman, and H. Talbot. (2009). 4-D morphological segmentation and the MICCAI LV-segmentation grand challenge. MIDAS J.[Online]. Available: http://hdl.handle.net/10380/3085
    • (2009) MIDAS J
    • Marak, L.1    Cousty, J.2    Najman, L.3    Talbot, H.4
  • 42
    • 0002774129 scopus 로고
    • Morphological area opening and closing for grayscale images
    • New York: Springer-Verlag
    • L. Vincent, "Morphological area opening and closing for grayscale images," in Shape in Picture Workshop. New York: Springer-Verlag, 1992, pp. 197-208.
    • (1992) Shape in Picture Workshop , pp. 197-208
    • Vincent, L.1
  • 43
    • 28044455885 scopus 로고    scopus 로고
    • Using line segments as structuring elements for sampling-invariant measurements
    • Nov
    • C. L. L. Hendriks and L. J. van Vliet, "Using line segments as structuring elements for sampling-invariant measurements," IEEE Trans. Pattern Anal. Mach. Intell., vol. 27, no. 11, pp. 1826-1831, Nov. 2005.
    • (2005) IEEE Trans. Pattern Anal. Mach. Intell , vol.27 , Issue.11 , pp. 1826-1831
    • Hendriks, C.L.L.1    Van Vliet, L.J.2
  • 46
    • 84856295390 scopus 로고    scopus 로고
    • Image filtering using anisotropic structure tensor for cell membrane enhancement in 3-D microscopy
    • Sep
    • S. Pop, A. Dufour, and J.-C. Olivo-Marin, "Image filtering using anisotropic structure tensor for cell membrane enhancement in 3-D microscopy," in Proc. 18th IEEE Int. Conf. Image Process., Sep. 2011, pp. 2041-2044.
    • (2011) Proc. 18th IEEE Int. Conf. Image Process , pp. 2041-2044
    • Pop, S.1    Dufour, A.2    Olivo-Marin, J.-C.3
  • 47
    • 0027576716 scopus 로고
    • Morphological grayscale reconstruction in image analysis: Applications and efficient algorithms
    • DOI 10.1109/83.217222
    • L. Vincent, "Morphological grayscale reconstruction in image analysis: Applications and efficient algorithms," IEEE Trans. Image Process., vol. 2, no. 2, pp. 176-201, Apr. 1993. (Pubitemid 23692871)
    • (1993) IEEE Transactions on Image Processing , vol.2 , Issue.2 , pp. 176-201
    • Vincent Luc1
  • 48
    • 17444391301 scopus 로고    scopus 로고
    • The viscous watershed transform
    • C. Vachier and F. Meyer, "The viscous watershed transform," J. Math. Image Vis., vol. 22, nos. 2-3, pp. 251-267, 2005.
    • (2005) J. Math. Image Vis , vol.22 , Issue.2-3 , pp. 251-267
    • Vachier, C.1    Meyer, F.2
  • 49
    • 0001803094 scopus 로고
    • A transformation for extracting new descriptors of shape
    • H. Blum, "A transformation for extracting new descriptors of shape," Models Percept. Speech Vis., vol. 19, no. 5, pp. 362-380, 1967.
    • (1967) Models Percept. Speech Vis , vol.19 , Issue.5 , pp. 362-380
    • Blum, H.1
  • 50
    • 84884663627 scopus 로고    scopus 로고
    • Morphological Operations on 3D and 4D Images: From Shape Primitive Detection to Skeletonization
    • P. Jonker, "Morphological operations on 3-D and 4-D images: From shape primitive detection to skeletonization," in Discrete Geometry for Computer Imagery. New York: Springer-Verlag, 2000, pp. 371-391. (Pubitemid 33209886)
    • (2000) Ls , Issue.1953 , pp. 371-391
    • Jonker, P.P.1
  • 53
    • 84870908566 scopus 로고    scopus 로고
    • Label object representation and manipulation with ITK
    • G. Lehmann. (2008). Label object representation and manipulation with ITK. Insight J.[Online]. Available: http://hdl.handle.net/1926/584
    • (2008) Insight J
    • Lehmann, G.1
  • 54
    • 77950966677 scopus 로고    scopus 로고
    • Grayscale morphological attribute operations
    • R. Beare. (2007). Grayscale morphological attribute operations. Insight J. Online]. Available: http://hdl.handle.net/1926/1316
    • (2007) Insight J
    • Beare, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.