Erratum to Development of Vascular Tissue and Stress Inducible Hybrid-Synthetic Promoters Through Dof-1 Motifs Rearrangement (Cell Biochem Biophys, (2012), 63, (235-245), 10.1007/s12013-012-9359-9);Development of Vascular Tissue and Stress Inducible Hybrid-Synthetic Promoters Through Dof-1 Motifs Rearrangement

Cell Biochemistry and Biophysics

Volumn 63, Issue 3, 2012, Pages 235-245

  Ranjan, Rajiv ^a   Dey, Nrisingha ^a  

^a INSTITUTE OF LIFE SCIENCES   (India)

Author keywords

CLSM; Figwort mosaic virus (FMV); GUS; Hybrid synthetic promoter; qRT PCR

Indexed keywords

CAULIFLOWER MOSAIC VIRUS; CAULIMOVIRUS; FIGWORT MOSAIC VIRUS; NICOTIANA TABACUM;

EID: 84862255563     PISSN: 10859195     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12013-012-9488-1     Document Type: Erratum

References (49)

1. Kay, R., Chan, A., Daly, M., & Mcpherson, J. (1987). Duplication of CaMV 35S promoter creates a strong enhancer for plant genes. Science, 236(5), 1299-1302.
2. Bhullar, S., Chakravarthy, S., Advani, V., Datta, S., Pental, D., & Burma, P. K. (2003). Strategies for development of functionally equivalent promoters with minimum sequence homology for transgene expression in plants: cis-Elements in a novel DNA context versus domain swapping. Plant Physiology, 132, 988-998.
3. Ni, M., Cui, D., Einstein, J., Narasimhulu, S., Vergara, C. E., & Gelvin, S. B. (1995). Strength and tissue specificity of chimeric promoters derived from the octopine and mannopine synthase genes. The Plant Journal, 7, 661-676.
4. Kumar, D., Patro, S., Ranjan, R., Sahoo, D., Maiti, I. B., & Dey, N. (2011). Development of useful recombinant promoter and its expression analysis in different plant cells using confocal laser scanning microscopy. PLoS ONE, 6(9), e24627. doi: 10. 1371/journal. pone. 0024627.
5. Ranjan, R., Patro, S., Pradhan, B., Kumar, A., Maiti, I. B., & Dey, N. (2012). Development and functional analysis of novel genetic promoters using DNA shuffling, hybridization and a combination thereof. PLoS ONE, 7(3), e31931. doi: 10. 1371/journal. pone. 0031931.
6. Ranjan, R., Patro, S., Kumari, S., Kumar, D., Maiti, I. B., & Dey, N. (2011). Efficient chimeric promoters derived from full-length and sub-genomic transcript promoters of Figwort mosaic virus (FMV). Journal of Biotechnology, 152, 58-62.
7. de Boer, H. A., Comstock, L. J., & Vasser, M. (1983). The tac promoter: A functional hybrid derived from the trp and lac promoters. Proceedings of the National academy of Sciences of the United States of America, 80(1), 21-25.
8. Gurr, S. J., & Rushton, P. J. (2005). Engineering plants with increased disease resistance: How are we going to express it? Trends in Biotechnology, 23, 283-290.
9. Rushton, P. J., Reinstadler, A., Lipka, V., Lippok, B., & Somssich, I. E. (2002). Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. Plant Cell, 14, 749-762.
10. Mehrotra, R., & Mehrotra, S. (2010). Promoter activation by ACGT in response to salicylic and abscisic acids is differentially regulated by the spacing between two copies of the motif. Journal of Plant Physiology, 167, 1214-1218.
11. Mehrotra, R., Gupta, G., Sethi, R., Bhalothia, P., Kumar, N., & Mehrotra, S. (2011). Designer promoter: An artwork of cis engineering. Plant Molecular Biology, 75, 527-536.
12. Venter, M. (2007). Synthetic promoters: Genetic control through cis engineering. Trends in Plant Science, 12, 118-124.
13. Maiti, I. B., Gowda, S., Kiernan, J., Ghosh, S. K., & Shepherd, R. J. (1997). Promoter/leader deletion analysis and plant expression vectors with Figwort mosaic virus (FMV) full-length transcript (Flt) promoter containing single and double enhancer domains. Transgenic Research, 6, 143-156.
14. Bhattacharyya, S., Dey, N., & Maiti, I. B. (2002). Analysis of cis-sequence of subgenomic transcript promoter from the Figwort mosaic virus and comparison of promoter activity with the Cauliflower mosaic virus promoters in monocot and dicot cells. Virus Research, 90, 47-62.
15. Odell, J. T., Nagy, F., & Chua, N. H. (1985). Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature, 313, 810-812.
16. Benfey, P. N., & Chua, N. H. (1990). The cauliflower mosaic virus 35S promoter: Combinatorial regulation of transcription in plants. Science, 250, 959-966.
17. Benfey, P. N., Ren, L., & Chua, N. H. (1990). Combinatorial and synergistic properties of CaMV 35S enhancer subdomains. EMBO Journal, 9, 1685-1696.
18. Gardner, R. C., Howarth, A. J., Hahn, A. J., Brown-Leudi, P., Shepherd, R. J., & Messing, J. (1981). The complete nucleotide sequence of an infectious clone of cauliflower mosaic virus by M13mp7 shortgun sequencing. Nucleic Acids Research, 9, 2871-2888.
19. Hull, R., Sadler, J., & Longstaff, M. (1986). The sequence of carnation etched ring viral DNA: Comparison with cauliflower mosaic virus and retrovirus. EMBO Journal, 5, 3083-3090.
20. Yanagisawa, S., & Sheen, J. (1998). Involvement of maize DOF Zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell, 10, 75-89.
21. Yanagisawa, S., & Schmidt, R. J. (1999). Diversity and similarity among recognition sequences of transcription factors. Plant Journal, 17, 209-214.
22. Yanagisawa, S. (2002). The Dof family of plant transcription factor. Trends in Plant Science, 7, 555-560.
23. Yanagisawa, S. (2004). Dof domain proteins: Plant-specific transcription factors associated with diverse phenomena unique to plants. Plant and Cell Physiology, 45, 386-391.
24. Konoshi, M., & Yanagisawa, S. (2007). Sequential activation of two Dof transcription factor gene promoters during vascular development in Arabidopsis thaliana. Plant Physiology and Biochemistry, 45, 623-629.
25. Dey, N., & Maiti, I. B. (1999). Structure and promoter/leader deletion analysis of mirabilis mosaic virus (MMV) full length transcript promoter in transgenic plants. Plant Molecular Biology, 40, 771-782.
26. Sahoo, D. K., Ranjan, R., Kumar, D., Kumar, A., Sahoo, B. S., Raha, S., et al. (2009). An alternative method of promoter assessment by confocal laser scanning microscopy. Journal of Virological Methods, 161, 114-121.
27. Schardl, C. L., Byrd, A. D., Benzion, G., Altschuler, M. A., Hildebrand, D. F., & Hunt, A. G. (1987). Design and construction of a versatile system for the expression of foreign genes in plants. Gene, 61, 1-11.
28. -{increment}{increment}CT method. Method, 25, 402-408.
29. Pfaffl, M. W. (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research, 29, 2002-2007.
30. Santamaria, M., Thomson, C. J., Read, N. D., & Loake, G. J. (2001). The promoter of a basic PR1-like gene, AtPRB1, from Arabidopsis establishes an organ-specific expression pattern and responsiveness to ethylene and methyl jasmonate. Plant Molecular Biology, 47, 641-652.
31. Jupin, I., & Chua, N. H. (1996). Activation of the CaMV as-1 cis-element by salicylic acid: Differential DNA-binding of a factor related to TGA1a. EMBO Journal, 15(1996), 5679-5689.
32. Jefferson, R. A., Kavanagh, T. A., & Bevan, M. W. (1987). GUS fusions: Beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO Journal, 6, 3901-3907.
33. Bradford, M. M. (1976). A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry, 72, 248-254.
34. Bhasin, M., Zhang, H., Reinherz, E., Reche, L., & Pedro, A. (2005). Prediction of methylated CpGs in DNA sequences using a support vector machine. FEBS Letters, 579, 4302-4308.
35. Pradhan, S., Urwin, N. A. R., Jenkins, G. I., & Adams, R. L. P. (1999). Effects of CWG methylation on expression of plant genes. Biochemical Journal, 341, 473-476.
36. Bhattacharyya-Pakrasi, M., Pen, J., Elmer, J. S., Laco, G., Shen, P., Kaniewska, M. B., et al. (1993). Specificity of a promoter from the Rice tungro bacilliform virus for expression in phloem tissues. Plant Journal, 4, 71-79.
37. Medberry, S. L., Lockhart, B. E. L., & Olszewski, N. E. (1992). The Commelina yellow mottle virus promoter is a strong promoter in vascular and reproductive tissues. Plant Cell, 4, 185-192.
38. Hasegawa, A., Verver, J., Shimada, A., Saito, M., Goldbach, R., van Kammen, A., et al. (1989). The complete sequence of soybean chlorotic mottle virus DNA and the identification of a novel promoter. Nucleic Acids Research, 17, 9993-10013.
39. Gowda, S., Wu, F. C., Herman, H. B., & Shepherd, R. J. (1989). Gene VI of Figwort mosaic virus (caulimovirus group) functions in posttranscriptional expression of genes on the full-length RNA transcript. Proceedings of the National academy of Sciences of the United States of America, 86, 9203-9207.
40. Sanger, M., Daubert, S., & Goodman, R. M. (1990). Characteristics of a strong promoter from Figwort mosaic virus: comparison with the analogous 35S promoter from Cauliflower mosaic virus and the regulated mannopine synthase promoter. Plant Molecular Biology, 14, 433-443.
41. Verdaguer, B., de Kochko, A., Beachy, R. N., & Fauquet, C. (1996). Isolation and expression in transgenic tobacco and rice plants, of the cassava vein mosaic virus (CVMV) promoter. Plant Molecular Biology, 31, 1129-1139.
42. Maiti, I. B., & Shepherd, R. J. (1998). Isolation and expression analysis of peanut chlorotic streak caulimovirus (PClSV) fulllength transcript (FLt) promoter in transgenic plants. Biochemical and Biophysical Research Communications, 244, 440-444.
43. Kang, H. G., Foley, R. C., Onate, S. L., Lin, C., & Singh, K. B. (2003). Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain protein inducible by salicylic acid. The Plant Journal, 35, 362-372.
44. Cai, M., Wei, J., Xianghua, L., Caiguo, X., & Shiping, W. (2007). A rice promoter containing both novel positive and negative cis-elements for regulation of green tissue specific gene expression in transgenic plants. Plant Biotechnol, 5, 664-674.
45. Gago, J., Pettenati, J. G., & Gallego, P. P. (2011). Vascular-specific expression of GUS and GFP reporter genes in transgenic grapevine (Vitis vinifera L. cv. Albariño) conferred by the EgCCR promoter of Eucalyptus gunnii. Plant Physiology and Biochemistry, 49, 413-419.
46. Kang, H. G., & Singh, K. B. (2000). Characterization of salicylic acid-responsive Arabidopsis Dof domain proteins: Over expression of OBP3 leads to growth defects. Plant Journal, 21, 329-339.
47. Diaz, I., Vicente-Carbajosa, J., Abraham, Z., Martinez, M., Isabel-La Moneda, I., & Carbonedro, P. (2002). The GAMYB protein from barely interacts with DOF transcription factor BPBF and activates endosperm-specific genes during seed development. Plant Journal, 29, 453-464.
48. Isabel-Lamoneda, I., Diaz, I., Martinez, M., Mena, M., & Carbonedro, P. (2003). SAD: A new DOF protein from barely that activates transcription of cathepsin B-like thiol protease gene in the aleurone of germinating seeds. Plant Journal, 33, 329-340.
49. Mena, M., Cejudo, F. J., Isabel-Lamoneda, I., & Carbonedro, P. (2002). A role for the DOF transcription factor BPBF in the regulation of gibberellins-responsive genes in barley aleurone. Plant Physiology, 130, 111-119.