-
1
-
-
51149123030
-
Usability and usefulness in bioinformatics: Evaluating a tool for querying and analyzing protein interactions based on scientists' actual research questions
-
Seattle, Washington, USA
-
Mirel, B. (2007) Usability and usefulness in bioinformatics: evaluating a tool for querying and analyzing protein interactions based on scientists' actual research questions. In: Professional Communication Conference, IEEE International. The Crowne Plaza Seattle Hotel, Seattle, Washington, USA, 1-8.
-
(2007)
Professional Communication Conference, IEEE International. The Crowne Plaza Seattle Hotel
, pp. 1-8
-
-
Mirel, B.1
-
2
-
-
77951970370
-
The future of annotation/biocuration
-
April 2012, date last accessed)
-
Bairoch, A. (2009) The future of annotation/biocuration. Nature Precedings. http://precedings.nature.com/documents/3092/version/1 (13 April 2012, date last accessed).
-
(2009)
Nature Precedings.
, vol.13
-
-
Bairoch, A.1
-
3
-
-
0035755351
-
Integrating genotype and phenotype information: An overview of the PharmGKB project
-
Klein, T. E., Chang, J. T., Cho, M. K. et al. (2001) Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenomics J., 1, 167-170. (Pubitemid 33756654)
-
(2001)
Pharmacogenomics Journal
, vol.1
, Issue.3
, pp. 167-170
-
-
Klein, T.E.1
-
4
-
-
54549125821
-
PharmGKB: Understanding the effects of individual genetic variants
-
Sangkuhl, K., Berlin, D. S., Altman, R. B. et al. (2008) PharmGKB: understanding the effects of individual genetic variants. Drug Metabolism Rev., 40, 539-551.
-
(2008)
Drug Metabolism Rev.
, vol.40
, pp. 539-551
-
-
Sangkuhl, K.1
Berlin, D.S.2
Altman, R.B.3
-
5
-
-
82755166898
-
From pharmacogenomic knowledge acquisition to clinical applications: The PharmGKB as a clinical pharmacogenomic biomarker resource
-
McDonagh, E. M., Whirl-Carrillo, M., Garten, Y. et al. (2011) From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource. Biomarkers Med, 5, 795-806.
-
(2011)
Biomarkers Med
, vol.5
, pp. 795-806
-
-
McDonagh, E.M.1
Whirl-Carrillo, M.2
Garten, Y.3
-
6
-
-
51049105083
-
OntoGene in biocreative II
-
Rinaldi, F., Kappeler, T., Kaljurand, K. et al. (2008) OntoGene in BioCreative I I. Genome Biol., 9(Suppl 2), S13.
-
(2008)
Genome Biol.
, vol.9
, Issue.SUPPL. 2
-
-
Rinaldi, F.1
Kappeler, T.2
Kaljurand, K.3
-
7
-
-
77955450675
-
OntoGene in biocreative I I.5
-
Rinaldi, F., Schneider, G., Kaljurand, K. et al. (2010) OntoGene in BioCreative I I.5. IEEE/ACM Trans. Computa. Biol. Bioinfor., 7, 472-480.
-
(2010)
IEEE/ACM Trans. Computa. Biol. Bioinfor.
, vol.7
, pp. 472-480
-
-
Rinaldi, F.1
Schneider, G.2
Kaljurand, K.3
-
8
-
-
80053414674
-
Detection of interaction articles and experimental methods in biomedical literature
-
Schneider, G., Clematide, S. and Rinaldi, F. (2011) Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinformatics, 12(Suppl 8), S13.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.SUPPL. 8
-
-
Schneider, G.1
Clematide, S.2
Rinaldi, F.3
-
9
-
-
84949749640
-
Assessment of ner solutions against the first and second calbc silver standard corpus
-
Rebholz-Schuhmann, D., Yepes, A., Li, C. et al. (2011) Assessment of ner solutions against the first and second calbc silver standard corpus. J. Biomed. Semantics, 2(Suppl 5), S11.
-
(2011)
J. Biomed. Semantics
, vol.2
, Issue.SUPPL. 5
-
-
Rebholz-Schuhmann, D.1
Yepes, A.2
Li, C.3
-
10
-
-
84865971332
-
Relation mining experiments in the pharmacogenomics domain
-
in press
-
Rinaldi, F., Schneider, G. and Clematide, S. (2012) Relation mining experiments in the pharmacogenomics domain. J. Biomed. Inform, in press.
-
(2012)
J. Biomed. Inform
-
-
Rinaldi, F.1
Schneider, G.2
Clematide, S.3
-
12
-
-
80053393894
-
Biocreative III interactive task: An overview
-
Arighi, C., Roberts, P., Agarwal, S. et al. (2011) Biocreative III interactive task: an overview. BMC Bioinformatics, 12(Suppl 8), S4.
-
(2011)
BMC Bioinformatics
, Issue.12 SUPPL. 8
-
-
Arighi, C.1
Roberts, P.2
Agarwal, S.3
-
13
-
-
80052774027
-
The gene normalization task in biocreative III
-
Lu, Z., Kao, H.- Y., Wei, C.- H. et al. (2011) The gene normalization task in biocreative II I. BMC Bioinformatics, 12(Suppl 8), S2.
-
(2011)
BMC Bioinformatics
, Issue.12 SUPPL. 8
-
-
Lu, Z.1
Kao H.-, Y.2
Wei C.-, H.3
-
14
-
-
51049088875
-
Overview of the protein-protein interaction annotation extraction task of BioCreative II
-
Krallinger, M., Leitner, F., Rodriguez-Penagos, C. et al. (2008) Overview of the protein-protein interaction annotation extraction task of BioCreative I I. Genome Biol., 9(Suppl 2), S4.
-
(2008)
Genome Biol.
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
Leitner, F.2
Rodriguez-Penagos, C.3
-
15
-
-
77955441742
-
An overview of Biocreative I I.5
-
Leitner, F., Mardis, S. A., Krallinger, M. et al. (2010) An overview of Biocreative I I.5. IEEE/ACM T. Computat. Biol. Bioinform., 7, 385-399.
-
(2010)
IEEE/ACM T. Computat. Biol. Bioinform.
, vol.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.A.2
Krallinger, M.3
-
16
-
-
34547844156
-
Manual curation is not sufficient for annotation of genomic databases
-
DOI 10.1093/bioinformatics/btm229
-
Baumgartner, W. A., Cohen, K. B., Fox, L. M. et al. (2007) Manual curation is not sufficient for annotation of genomic databases. Bioinformatics, 23, i41-i48. (Pubitemid 47244384)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Baumgartner Jr., W.A.1
Cohen, K.B.2
Fox, L.M.3
Acquaah-Mensah, G.4
Hunter, L.5
-
17
-
-
14044254746
-
Textpresso: An ontology-based information retrieval and extraction system for biological literature
-
09
-
Mller, H.- M., Kenny, E. E. and Sternberg, P. W. (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol., 2, e309,09.
-
(2004)
PLoS Biol.
, vol.2
-
-
Mller H.-, M.1
Kenny, E.E.2
Sternberg, P.W.3
-
18
-
-
3042786293
-
A gene network for navigating the literature
-
Hoffmann, R. and Valencia, A. (2004) A gene network for navigating the literature. Nat. Genet., 36, 664.
-
(2004)
Nat. Genet.
, vol.36
, pp. 664
-
-
Hoffmann, R.1
Valencia, A.2
-
19
-
-
13344278672
-
Content-rich biological network constructed by mining pubmed abstracts
-
Chen, H. and Sharp, B. M. (2004) Content-rich biological network constructed by mining pubmed abstracts. BMC Bioinformatics, 5, 147.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 147
-
-
Chen, H.1
Sharp, B.M.2
-
20
-
-
40549106856
-
Assisted curation: Does text mining really help
-
In: Altman, R. B., Dunker, A. K., Hunter, L. et al. (eds) Kohala Coast, Hawaii, USA
-
Alex, B., Grover, C., Haddow, B. et al. (2008) Assisted curation: does text mining really help. In: Altman, R. B., Dunker, A. K., Hunter, L. et al. (eds), BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing. Kohala Coast, Hawaii, US A.
-
(2008)
BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing
-
-
Alex, B.1
Grover, C.2
Haddow, B.3
-
21
-
-
42549103568
-
Natural language processing in aid of flybase curators
-
Karamanis, N., Seal, R., Lewin, I. et al. (2008) Natural language processing in aid of flybase curators. BMC Bioinformatics, 9, 193.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 193
-
-
Karamanis, N.1
Seal, R.2
Lewin, I.3
-
22
-
-
36348936987
-
Integrating natural language processing with flybase curation. Grand Wailea, Maui, Hawaii
-
Karamanis, N., Lewin, I., Seal, R. et al. (2007) Integrating natural language processing with flybase curation. Grand Wailea, Maui, Hawaii. In: Pacific Symposium on Biocomputing, 245-256.
-
(2007)
Pacific Symposium on Biocomputing
, pp. 245-256
-
-
Karamanis, N.1
Lewin, I.2
Seal, R.3
-
23
-
-
85075638626
-
The second release of the RASP system
-
Sydney, Australia
-
Briscoe, T., Carroll, J. and Watson, R. (2006) The second release of the RASP system. In: Proceedings of the COLING/ACL 2006 Interactive Presentation SessionsJuly. Association for Computational Linguistics, Sydney, Australia, pp. 77-80.
-
(2006)
Proceedings of the COLING/ACL 2006 Interactive Presentation SessionsJuly. Association for Computational Linguistics
, pp. 77-80
-
-
Briscoe, T.1
Carroll, J.2
Watson, R.3
-
24
-
-
40549141170
-
Intrinsic evaluation of text mining tools may not predict performance on realistic tasks. Fairmont Orchid
-
Caporaso, J. G., Deshpande, N., Fink, J. L. et al. (2008) Intrinsic evaluation of text mining tools may not predict performance on realistic tasks. Fairmont Orchid, Big Island of Hawaii. Pacific Symposium on Biocomputing, 13, 640-651.
-
(2008)
Big Island of Hawaii. Pacific Symposium on Biocomputing
, vol.13
, pp. 640-651
-
-
Caporaso, J.G.1
Deshpande, N.2
Fink, J.L.3
-
25
-
-
58549107557
-
Textpresso for neuroscience: Searching the full text of thousands of neuroscience research papers
-
Mller, H. M., Rangarajan, A., Teal, T. K. et al. (2008) Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers. Neuroinformatics, 6, 195-20.
-
(2008)
Neuroinformatics
, vol.6
, pp. 195-20
-
-
Mller, H.M.1
Rangarajan, A.2
Teal, T.K.3
-
26
-
-
63049114009
-
Pharmspresso: A text mining tool for extraction of pharmacogenomic concepts and relationships from full text
-
Garten, Y. and Altman, R. (2009) Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. BMC Bioinformatics, 10(Suppl 2), S6.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 2
-
-
Garten, Y.1
Altman, R.2
-
27
-
-
78149321695
-
Recent progress in automatically extracting information from the pharmacogenomic literature
-
Garten, Y., Coulet, A. and Altman, R. B. (2010) Recent progress in automatically extracting information from the pharmacogenomic literature. Pharmacogenomics, 11, 1467-1489.
-
(2010)
Pharmacogenomics
, Issue.11
, pp. 1467-1489
-
-
Garten, Y.1
Coulet, A.2
Altman, R.B.3
-
28
-
-
82755183234
-
Integration and publication of heterogeneous text-mined relationships on the semantic web
-
Coulet, A., Garten, Y., Dumontier, M. et al. (2011) Integration and publication of heterogeneous text-mined relationships on the semantic web. J. Biomed. Semantics, 2(Suppl 2), S10.
-
(2011)
J. Biomed. Semantics
, vol.2
, Issue.SUPPL. 2
-
-
Coulet, A.1
Garten, Y.2
Dumontier, M.3
|