Spindles and active vortices in a model of confined filament-motor mixtures

BMC Biophysics

Volumn 4, Issue 1, 2011, Pages

  Head, David A ^a,b,c   Briels, WJ ^b   Gompper, Gerhard ^a  

^a FORSCHUNGSZENTRUM JÜLICH   (Germany)

^b UNIVERSITY OF TWENTE   (Netherlands)

^c UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

SCHIZOSACCHAROMYCETACEAE;

EID: 84862203842     PISSN: 20461682     EISSN: None     Source Type: Journal    
DOI: 10.1186/2046-1682-4-18     Document Type: Article

References (34)

1. Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P. Molecular Biology of the Cell. Garland Science 2007, 5.
2. Bray D. Cell Movements: From Molecules to Motility. Garland Science 2000, 2.
3. Mizuno D, Tardin C, Schmidt CF, Mackintosh F. Nonequilibrium mechanics of active cytoskeletal networks. Science 2007, 315(5810):370-373. 10.1126/science.1134404, 17234946.
4. Carazo-Salas RE, Nurse P. Self-organization of inter-phase microtubule arrays in fission yeast. Nature Cell Biology 2006, 8(10):1102-1107. 10.1038/ncb1479, 16998477.
5. Daga RR, Lee KG, Bratman S, Salas-Pino S, Chang F. Self-organization of microtubule bundles in anu-cleate fission yeast cells. Nature Cell Biology 2006, 8(10):1108-1113. 10.1038/ncb1480, 16998476.
6. Haase SB, Lew DJ. Microtubule Organization: Cell Shape Is Destiny. Current Biology 2007, 17(7):R249-R251. 10.1016/j.cub.2007.02.003, 17407755.
7. Verde F, Berrez J, Antony C, Karsenti E. Taxol-Induced Microtubule Asters In Mitotic Extracts Of Xenopus Eggs - Requirement For Phosphory-lated Factors And Cytoplasmic Dynein. Journal Of Cell Biology 1991, 112(6):1177-1187. 10.1083/jcb.112.6.1177, 2288889, 1671864.
8. Heald R, Tournebize R, Blank T, Sandaltzopoulos R, Becker P, Hyman A, Karsenti E. Self-organization of microtubules into bipolar spindles around artificial chromosomes in Xenopus egg extracts. Nature 1996, 382:420. 10.1038/382420a0, 8684481.
9. Hentrich C, Surrey T. Microtubule organization by the antagonistic mitotic motors kinesin-5 and kinesin-14. The Journal of Cell Biology 2010, 189(3):465-480. 10.1083/jcb.200910125, 2867311, 20439998.
10. Terenna CR, Makushok T, Velve-Casquillas G, Baigl D, Chen Y, Bornens M, Paoletti A, Piel M, Tran PT. Physical Mechanisms Redirecting Cell Polarity and Cell Shape in Fission Yeast. Current Biology 2008, 18(22):1748-1753. 10.1016/j.cub.2008.09.047, 2997722, 19026544.
11. Pinot M, Chesnel F, Kubiak J, Arnal I, Nedelec F, Gueroui Z. Effects of Confinement on the Self-Organization of Microtubules and Motors. Current Biology 2009, 19:954-960. 10.1016/j.cub.2009.04.027, 19427215.
12. Voituriez R, Joanny JF, Prost J. Spontaneous flow transition in active polar gels. Europhysics Letters (EPL) 2005, 70(3):404-410.
13. Cates ME, Fielding SM, Marenduzzo D, Orlandini E, Yeomans JM. Shearing Active Gels Close to the Isotropic-Nematic Transition. Physical Review Letters 2008, 101(6):068102.
14. Giomi L, Liverpool TB, Marchetti MC. Sheared active fluids: Thickening, thinning, and vanishing viscosity. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) 2010, 81(5):051908.
15. N'ed'elec F, Surrey T, Maggs A, Leibler S. Self-organization of microtubules and motors. Nature 1997, 389(6648):305-308. 10.1038/38532, 9305848.
16. Surrey T, Nédélec F, Leibler S, Karsenti E. Physical Properties Determining Self-Organization of Motors and Microtubules. Science 2001, 292(5519):1167-1171. 10.1126/science.1059758, 11349149.
17. Kruse K, Joanny JF, Julicher F, Prost J, Sekimoto K. Asters, vortices, and rotating spirals in active gels of polar filaments. Physical Review Letters 2004, 92(7):078101.
18. Elgeti J, Cates ME, Marenduzzo D. Defect hydrodynamics in 2D polar active fluids. Soft Matter 2011, 7(7):3177.
19. Head DA, Gompper G, Briels WJ. Microscopic basis for pattern formation and anomalous transport in two-dimensional active gels. Soft Matter 2011, 7:3116-3126.
20. Liverpool TB, Marchetta MC. Instabilities of isotropic solutions of active polar filaments. Phys Rev Lett 2004, 90:138102.
21. Ziebert F, Zimmermann W. Nonlinear competition between asters and stripes in filament-motor systems. Euro Phys J E 2005, 18:41.
22. Kraikivski P, Lipowsky R, Kierfeld J. Enhanced Ordering of Interacting Filaments by Molecular Motors. Physical Review Letters 2006, 96(25):258103.
23. Schaller V, Weber C, Semmrich C, Frey E, Bausch AR. Polar patterns of driven filaments. Nature 2010, 467(7311):73-77. 10.1038/nature09312, 20811454.
24. Schaller V, Weber C, Frey E, Bausch AR. Polar pattern formation: hydrodynamic coupling of driven filaments. Soft Matter 2011, 7(7):3213-3218.
25. Head DA, Mizuno D. Nonlocal fluctuation correlations in active gels. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) 2010, 81(4):041910.
26. Czirok A, BenJacob E, Cohen I, Vicsek T. Formation of complex bacterial colonies via self-generated vortices. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) 1996, 54(2):1791-1801.
27. Ramaswamy S. The Mechanics and Statistics of Active Matter. Annual Review of Condensed Matter Physics 2010, 1:323-345.
28. Toner J, Tu Y. Flocks, herds, and schools: A quantitative theory of flocking. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) 1998, 58(4):4828-4858.
29. Allen MP, Tildesley DJ. Computer Simulation of Liquids. 1989, Oxford University Press, USA.
30. Doi M, Edwards SF. The Theory of Polymer Dynamics (International Series of Monographs on Physics) 1988, Oxford University Press, USA.
31. Spurrier JD. Comm Stats - Thy Mech 1984, 13:1635.
32. D'Agostino RB, Stephens MA, . (Eds) Goodness-of-fit-techniques (Statistics: a Series of Textbooks and Monographs). Dekker 1986, 68. 1, (Eds).
33. Howard J. Mechanics of Motor Proteins and the Cy-toskeleton 2001, Sinauer, USA.
34. Soares e Silva M, Alvarado J, Nguyen J, Georgoulia N, Mulder B, Koenderink GH. Self-organized patterns of actin filaments in cell-sized confinement. Soft Matter 2011, 7(22):10631-10641.