-
1
-
-
0032911560
-
Reconstruction of phylogenetic relationships
-
B-Rao C, Majumdar KC. Reconstruction of phylogenetic relationships. J Biosci 1999, 24:121-137.
-
(1999)
J Biosci
, vol.24
, pp. 121-137
-
-
B-Rao, C.1
Majumdar, K.C.2
-
2
-
-
33846498263
-
-
Sage, Thousand Oaks (CA), Salkind NJ
-
Abdi H. Metric multidimensional scaling 2007, 598-605. Sage, Thousand Oaks (CA), Salkind NJ.
-
(2007)
Metric multidimensional scaling
, pp. 598-605
-
-
Abdi, H.1
-
4
-
-
0014185876
-
A comparison of some methods of cluster analysis
-
10.2307/2528417, 6080200
-
Gower JC. A comparison of some methods of cluster analysis. Biometrics 1967, 23:623-637. 10.2307/2528417, 6080200.
-
(1967)
Biometrics
, vol.23
, pp. 623-637
-
-
Gower, J.C.1
-
6
-
-
77952039847
-
Sequence embedding for fast construction of guide trees for multiple sequence alignment
-
10.1186/1748-7188-5-21, 2893182, 20470396
-
Blackshields G, Sievers F, Shi W, Wilm A, Higgins DG. Sequence embedding for fast construction of guide trees for multiple sequence alignment. Algorithms Mol Biol 2010, 5:21. 10.1186/1748-7188-5-21, 2893182, 20470396.
-
(2010)
Algorithms Mol Biol
, vol.5
, pp. 21
-
-
Blackshields, G.1
Sievers, F.2
Shi, W.3
Wilm, A.4
Higgins, D.G.5
-
7
-
-
0032103864
-
Map-like representation of phylogenetic relationships: Application to tilapiine fish
-
B-Rao C, Majumbar K. Map-like representation of phylogenetic relationships: Application to tilapiine fish. J Fish Biol 1998, 52:1199-1217.
-
(1998)
J Fish Biol
, vol.52
, pp. 1199-1217
-
-
B-Rao, C.1
Majumbar, K.2
-
8
-
-
0026547387
-
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets
-
Higgins DG. Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets. Comput Appl Biosci 1992, 8:15-22.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 15-22
-
-
Higgins, D.G.1
-
9
-
-
79955526038
-
Multidimensional scaling reveals the main evolutionary pathways of class A G-protein-coupled receptors
-
10.1371/journal.pone.0019094, 3081337, 21544207
-
Pelé J, Abdi H, Moreau M, Thybert D, Chabbert M. Multidimensional scaling reveals the main evolutionary pathways of class A G-protein-coupled receptors. PLoS One 2011, 6:e19094. 10.1371/journal.pone.0019094, 3081337, 21544207.
-
(2011)
PLoS One
, vol.6
-
-
Pelé, J.1
Abdi, H.2
Moreau, M.3
Thybert, D.4
Chabbert, M.5
-
10
-
-
78650845114
-
A complete analysis of HA and NA genes of influenza A viruses
-
10.1371/journal.pone.0014454, 3012125, 21209922
-
Shi W, Lei F, Zhu C, Sievers F, Higgins DG. A complete analysis of HA and NA genes of influenza A viruses. PLoS One 2010, 5:e14454. 10.1371/journal.pone.0014454, 3012125, 21209922.
-
(2010)
PLoS One
, vol.5
-
-
Shi, W.1
Lei, F.2
Zhu, C.3
Sievers, F.4
Higgins, D.G.5
-
11
-
-
0023048745
-
A use for principal coordinate analysis in the comparison of protein sequences
-
10.1016/0006-291X(86)90705-9, 3022735
-
Woolley KJ, Athalye M. A use for principal coordinate analysis in the comparison of protein sequences. Biochem Biophys Res Commun 1986, 140:808-813. 10.1016/0006-291X(86)90705-9, 3022735.
-
(1986)
Biochem Biophys Res Commun
, vol.140
, pp. 808-813
-
-
Woolley, K.J.1
Athalye, M.2
-
12
-
-
44349104257
-
The out-of-sample problem for classical multidimensional scaling
-
10.1016/j.csda.2008.02.031, 22794144
-
Trosset MW, Pribe CE. The out-of-sample problem for classical multidimensional scaling. Computational statistics & data analysis 2008, 52:4635-4642. 10.1016/j.csda.2008.02.031, 22794144.
-
(2008)
Computational statistics & data analysis
, vol.52
, pp. 4635-4642
-
-
Trosset, M.W.1
Pribe, C.E.2
-
13
-
-
0000457927
-
Adding a Point to Vector Diagrams in Multivariate Analysis
-
Gower JC. Adding a Point to Vector Diagrams in Multivariate Analysis. Biometrika 1968, 55:582-585.
-
(1968)
Biometrika
, vol.55
, pp. 582-585
-
-
Gower, J.C.1
-
15
-
-
20744439107
-
MADE4: an R package for multivariate analysis of gene expression data
-
10.1093/bioinformatics/bti394, 15797915
-
Culhane AC, Thioulouse J, Perriere G, Higgins DG. MADE4: an R package for multivariate analysis of gene expression data. Bioinformatics 2005, 21:2789-2790. 10.1093/bioinformatics/bti394, 15797915.
-
(2005)
Bioinformatics
, vol.21
, pp. 2789-2790
-
-
Culhane, A.C.1
Thioulouse, J.2
Perriere, G.3
Higgins, D.G.4
-
16
-
-
44349095887
-
Adegenet: a R package for the multivariate analysis of genetic markers
-
10.1093/bioinformatics/btn129, 18397895
-
Jombart T. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 2008, 24:1403-1405. 10.1093/bioinformatics/btn129, 18397895.
-
(2008)
Bioinformatics
, vol.24
, pp. 1403-1405
-
-
Jombart, T.1
-
17
-
-
70349255569
-
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H. Vegan: Community Ecology Package http://cran.r-project.org/package=vegan.
-
Vegan: Community Ecology Package
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
O'Hara, R.B.5
Simpson, G.L.6
Solymos, P.7
Stevens, M.H.H.8
Wagner, H.9
-
18
-
-
1042304216
-
APE: Analyses of Phylogenetics and Evolution in R language
-
10.1093/bioinformatics/btg412, 14734327
-
Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 2004, 20:289-290. 10.1093/bioinformatics/btg412, 14734327.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
19
-
-
41149089793
-
-
Springer Verlag, New York, Bastolla U, Porto M, Roman HE, Vendruscolo M
-
Charif D, Lobry JR. SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis 2007, 207-232. Springer Verlag, New York, Bastolla U, Porto M, Roman HE, Vendruscolo M.
-
(2007)
SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis
, pp. 207-232
-
-
Charif, D.1
Lobry, J.R.2
-
20
-
-
0001330098
-
A general coefficient of similarity and some of its properties
-
Gower JC. A general coefficient of similarity and some of its properties. Biometrics 1971, 27:857-871.
-
(1971)
Biometrics
, vol.27
, pp. 857-871
-
-
Gower, J.C.1
-
21
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 1992, 8:275-282.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
22
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
10.1126/science.1604319, 1604319
-
Gonnet GH, Cohen MA, Benner SA. Exhaustive matching of the entire protein sequence database. Science 1992, 256:1443-1445. 10.1126/science.1604319, 1604319.
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
23
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
10.1073/pnas.89.22.10915, 50453, 1438297
-
Henikoff S, Henikoff JG. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A 1992, 89:10915-10919. 10.1073/pnas.89.22.10915, 50453, 1438297.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
25
-
-
0033670313
-
PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane
-
10.1093/bioinformatics/16.9.760, 11108698
-
Ng PC, Henikoff JG, Henikoff S. PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane. Bioinformatics 2000, 16:760-766. 10.1093/bioinformatics/16.9.760, 11108698.
-
(2000)
Bioinformatics
, vol.16
, pp. 760-766
-
-
Ng, P.C.1
Henikoff, J.G.2
Henikoff, S.3
-
26
-
-
0028153788
-
A mutation data matrix for transmembrane proteins
-
10.1016/0014-5793(94)80429-X, 8112466
-
Jones DT, Taylor WR, Thornton JM. A mutation data matrix for transmembrane proteins. FEBS Lett 1994, 339:269-275. 10.1016/0014-5793(94)80429-X, 8112466.
-
(1994)
FEBS Lett
, vol.339
, pp. 269-275
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
27
-
-
79951548848
-
Phangorn: phylogenetic analysis in R
-
10.1093/bioinformatics/btq706, 3035803, 21169378
-
Schliep KP. Phangorn: phylogenetic analysis in R. Bioinformatics 2011, 27:592-593. 10.1093/bioinformatics/btq706, 3035803, 21169378.
-
(2011)
Bioinformatics
, vol.27
, pp. 592-593
-
-
Schliep, K.P.1
-
28
-
-
57749093704
-
Using amap and ctc Packages for Huge Clustering
-
Lucas A. Using amap and ctc Packages for Huge Clustering. R news 2006, 6:58-60.
-
(2006)
R news
, vol.6
, pp. 58-60
-
-
Lucas, A.1
-
29
-
-
2942519065
-
-
Dimitriadou E, Hornik K, Leisch F, Meyer D, Weingessel A. Misc Functions of the Department of Statistics (e1071), TU Wien http://cran.r-project.org/package=e1071.
-
Misc Functions of the Department of Statistics (e1071), TU Wien
-
-
Dimitriadou, E.1
Hornik, K.2
Leisch, F.3
Meyer, D.4
Weingessel, A.5
-
31
-
-
0023453329
-
Silhouettes: A Graphical Aid to the Interpretation and Validation of Cluster Analysis
-
Rousseeuw P. Silhouettes: A Graphical Aid to the Interpretation and Validation of Cluster Analysis. J Comput Appl Math 1987, 20:53-65.
-
(1987)
J Comput Appl Math
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.1
-
32
-
-
84865284652
-
-
Curran Associates, Inc, Red Hook, Braverman A, RGL
-
Adler D, Nenadic O, Zucchini W, . RGL A R-library for 3D visualization with OpenGL 2009, 419-429. Curran Associates, Inc, Red Hook, Braverman A, RGL.
-
(2009)
A R-library for 3D visualization with OpenGL
, pp. 419-429
-
-
Adler, D.1
Nenadic, O.2
Zucchini, W.3
-
33
-
-
67349246265
-
An indel in transmembrane helix 2 helps to trace the molecular evolution of class A G-protein-coupled receptors
-
10.1007/s00239-009-9214-9, 19357801
-
Devillé J, Rey J, Chabbert M. An indel in transmembrane helix 2 helps to trace the molecular evolution of class A G-protein-coupled receptors. J Mol Evol 2009, 68:475-489. 10.1007/s00239-009-9214-9, 19357801.
-
(2009)
J Mol Evol
, vol.68
, pp. 475-489
-
-
Devillé, J.1
Rey, J.2
Chabbert, M.3
-
34
-
-
0038024615
-
The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints
-
10.1124/mol.63.6.1256, 12761335
-
Fredriksson R, Lagerstrom MC, Lundin LG, Schioth HB. The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. Mol Pharmacol 2003, 63:1256-1272. 10.1124/mol.63.6.1256, 12761335.
-
(2003)
Mol Pharmacol
, vol.63
, pp. 1256-1272
-
-
Fredriksson, R.1
Lagerstrom, M.C.2
Lundin, L.G.3
Schioth, H.B.4
-
35
-
-
0037131272
-
Functional annotation of two orphan G-protein-coupled receptors, Drostar1 and -2, from Drosophila melanogaster and their ligands by reverse pharmacology
-
10.1074/jbc.M206931200, 12167655
-
Kreienkamp HJ, Larusson HJ, Witte I, Roeder T, Birgul N, Honck HH, Harder S, Ellinghausen G, Buck F, Richter D. Functional annotation of two orphan G-protein-coupled receptors, Drostar1 and -2, from Drosophila melanogaster and their ligands by reverse pharmacology. J Biol Chem 2002, 277:39937-39943. 10.1074/jbc.M206931200, 12167655.
-
(2002)
J Biol Chem
, vol.277
, pp. 39937-39943
-
-
Kreienkamp, H.J.1
Larusson, H.J.2
Witte, I.3
Roeder, T.4
Birgul, N.5
Honck, H.H.6
Harder, S.7
Ellinghausen, G.8
Buck, F.9
Richter, D.10
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