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Volumn 50, Issue 6, 2012, Pages 1968-1973

Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; BACTERIAL RNA; CYTOSINE; RNA 16S;

EID: 84862102270     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00365-12     Document Type: Article
Times cited : (54)

References (41)
  • 1
    • 67651012770 scopus 로고    scopus 로고
    • Is quantitative PCR for the pneumolysin (ply) gene useful for detection of pneumococcal lower respiratory tract infection?
    • Abdeldaim G, et al. 2009. Is quantitative PCR for the pneumolysin (ply) gene useful for detection of pneumococcal lower respiratory tract infection? Clin. Microbiol. Infect. 15:565-570.
    • (2009) Clin. Microbiol. Infect. , vol.15 , pp. 565-570
    • Abdeldaim, G.1
  • 3
    • 33750954199 scopus 로고    scopus 로고
    • Molecular characterization of disease-associated streptococci of the mitis group that are optochin susceptible
    • Balsalobre L, et al. 2006. Molecular characterization of disease-associated streptococci of the mitis group that are optochin susceptible. J. Clin. Microbiol. 44:4163- 4171.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 4163-4171
    • Balsalobre, L.1
  • 4
    • 16844383568 scopus 로고    scopus 로고
    • Analysis of the genetic structure of nontypeable pneumococcal strains isolated from conjunctiva
    • Berrón S, Fenoll A, Ortega M, Arellano N, Casal J. 2005. Analysis of the genetic structure of nontypeable pneumococcal strains isolated from conjunctiva. J. Clin. Microbiol. 43:1694-1698.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1694-1698
    • Berrón, S.1    Fenoll, A.2    Ortega, M.3    Arellano, N.4    Casal, J.5
  • 5
    • 60549102164 scopus 로고    scopus 로고
    • Assigning strains to bacterial species via the internet
    • Bishop CJ, et al. 2009. Assigning strains to bacterial species via the internet. BMC Biol. 7:3.
    • (2009) BMC Biol. , vol.7 , pp. 3
    • Bishop, C.J.1
  • 6
    • 2442499501 scopus 로고    scopus 로고
    • Comparison of Conventional and Molecular Methods for Identification of Aerobic Catalase-Negative Gram-Positive Cocci in the Clinical Laboratory
    • DOI 10.1128/JCM.42.5.2065-2073.2004
    • Bosshard PP, Abels S, Altwegg M, Böttger EC, Zbinden R. 2004. Comparison of conventional and molecular methods for identification of aerobic catalase-negative gram-positive cocci in the clinical laboratory. J. Clin. Microbiol. 42:2065-2073. (Pubitemid 38637824)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.5 , pp. 2065-2073
    • Bosshard, P.P.1    Abels, S.2    Altwegg, M.3    Bottger, E.C.4    Zbinden, R.5
  • 7
    • 0042420142 scopus 로고    scopus 로고
    • Confirmation of nontypeable Streptococcus pneumoniae-like organisms isolated from outbreaks of epidemic conjunctivitis as Streptococcus pneumoniae
    • DOI 10.1128/JCM.41.9.4415-4417.2003
    • Carvalho MGS, Steigerwalt AG, Thompson T, Jackson D, Facklam RR. 2003. Confirmation of nontypeable Streptococcus pneumoniae-like organisms isolated from outbreaks of epidemic conjunctivitis as Streptococcus pneumoniae. J. Clin. Microbiol. 41:4415-4417. (Pubitemid 37099718)
    • (2003) Journal of Clinical Microbiology , vol.41 , Issue.9 , pp. 4415-4417
    • Carvalho, M.G.S.1    Steigerwalt, A.G.2    Thompson, T.3    Jackson, D.4    Facklam, R.R.5
  • 8
    • 35348910314 scopus 로고    scopus 로고
    • Crossing the barrier: Evolution and spread of a major class of mosaic pbp2x in Streptococcus pneumoniae, S. mitis and S. oralis
    • DOI 10.1016/j.ijmm.2007.02.009, PII S1438422107000379, Pathogenomics
    • Chi F, Nolte O, Bergmann C, Ip M, Hakenbeck R. 2007. Crossing the barrier: evolution and spread of a major class of mosaic pbp2x in Streptococcus pneumoniae, S. mitis and S. oralis. Int. J. Med. Microbiol. 297:503-512. (Pubitemid 47575957)
    • (2007) International Journal of Medical Microbiology , vol.297 , Issue.7-8 , pp. 503-512
    • Chi, F.1    Nolte, O.2    Bergmann, C.3    Ip, M.4    Hakenbeck, R.5
  • 9
    • 79251544864 scopus 로고    scopus 로고
    • Rapid pneumococcal evolution in response to clinical interventions
    • Croucher NJ, et al. 2011. Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-434.
    • (2011) Science , vol.331 , pp. 430-434
    • Croucher, N.J.1
  • 10
    • 77957357555 scopus 로고    scopus 로고
    • The human oral microbiome
    • Dewhirst FE, et al. 2010. The human oral microbiome. J. Bacteriol. 192:5002-5017.
    • (2010) J. Bacteriol. , vol.192 , pp. 5002-5017
    • Dewhirst, F.E.1
  • 11
    • 1242314287 scopus 로고    scopus 로고
    • rpoB Gene Sequence-Based Identification of Aerobic Gram-Positive Cocci of the Genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella
    • DOI 10.1128/JCM.42.2.497-504.2004
    • Drancourt M, Roux V, Fournier PE, Raoult D. 2004. rpoB gene sequence- based identification of aerobic Gram-positive cocci of the genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella. J. Clin. Microbiol. 42:497-504. (Pubitemid 38222619)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.2 , pp. 497-504
    • Drancourt, M.1    Roux, V.2    Fournier, P.-E.3    Raoult, D.4
  • 12
    • 77956690565 scopus 로고    scopus 로고
    • Partial recN gene sequencing: A new tool for identification and phylogeny within the genus Streptococcus
    • Glazunova OO, Raoult D, Roux V. 2010. Partial recN gene sequencing: a new tool for identification and phylogeny within the genus Streptococcus. Int. J. Syst. Evol. Microbiol. 60:2140-2148.
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 2140-2148
    • Glazunova, O.O.1    Raoult, D.2    Roux, V.3
  • 13
    • 0038628890 scopus 로고    scopus 로고
    • Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
    • DOI 10.1128/JCM.41.5.2068-2079.2003
    • Godoy D, et al. 2003. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J. Clin. Microbiol. 41: 2068-2079. (Pubitemid 36576536)
    • (2003) Journal of Clinical Microbiology , vol.41 , Issue.5 , pp. 2068-2079
    • Godoy, D.1    Randle, G.2    Simpson, A.J.3    Aanensen, D.M.4    Pitt, T.L.5    Kinoshita, R.6    Spratt, B.G.7
  • 14
    • 0035082972 scopus 로고    scopus 로고
    • Mosaic genes and mosaic chromosomes: Intra- and interspecies genomic variation of streptococcus pneumoniae
    • DOI 10.1128/IAI.69.4.2477-2486.2001
    • Hakenbeck R, et al. 2001. Mosaic genes and mosaic chromosomes: intraand interspecies genomic variation of Streptococcus pneumoniae. Infect. Immun. 69:2477-2486. (Pubitemid 32239720)
    • (2001) Infection and Immunity , vol.69 , Issue.4 , pp. 2477-2486
    • Hakenbeck, R.1    Balmelle, N.2    Weber, B.3    Gardes, C.4    Keck, W.5    De Saizieu, A.6
  • 15
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • Hanage WP, Fraser C, Spratt BG. 2005. Fuzzy species among recombinogenic bacteria. BMC Biol. 7;. 3:6.
    • (2005) BMC Biol. , vol.7
    • Hanage, W.P.1    Fraser, C.2    Spratt, B.G.3
  • 17
    • 30744465358 scopus 로고    scopus 로고
    • Use of phylogenetic and phenotypic analyses to identify nonhemolytic streptococci isolated from bacteremic patients
    • DOI 10.1128/JCM.43.12.6073-6085.2005
    • Hoshino T, Fujiwara T, Kilian M. 2005. Use of phylogenetic and phenotypic analyses to identify nonhemolytic streptococci from bacteremic patients. J. Clin. Microbiol. 43:6073-6085. (Pubitemid 43100663)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.12 , pp. 6073-6085
    • Hoshino, T.1    Fujiwara, T.2    Kilian, M.3
  • 18
    • 84555189796 scopus 로고    scopus 로고
    • Delineation of Streptococcus dysgalactiae, its subspecies, and its clinical and phylogenetic relationship to Streptococcus pyogenes
    • Jensen A, Kilian M. 2012. Delineation of Streptococcus dysgalactiae, its subspecies, and its clinical and phylogenetic relationship to Streptococcus pyogenes. J. Clin. Microbiol. 50:113-126.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 113-126
    • Jensen, A.1    Kilian, M.2
  • 19
    • 77955457923 scopus 로고    scopus 로고
    • Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group
    • Johnston C, et al. 2010. Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group. J. Clin. Microbiol. 48: 2762-2769.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 2762-2769
    • Johnston, C.1
  • 20
    • 0036284050 scopus 로고    scopus 로고
    • Evaluation of gene-technological and conventional methods in the identification of Streptococcus pneumoniae
    • DOI 10.1016/S0167-7012(02)00061-1, PII S0167701202000611
    • Kaijalainen T, Rintamäki S, Herva E, Leinonen M. 2002. Evaluation of gene-technological and conventional methods in the identification of Streptococcus pneumoniae. J. Microbiol. Methods 51:111-118. (Pubitemid 34628691)
    • (2002) Journal of Microbiological Methods , vol.51 , Issue.1 , pp. 111-118
    • Kaijalainen, T.1    Rintamaki, S.2    Herva, E.3    Leinonen, M.4
  • 21
    • 0028924690 scopus 로고
    • Determination of 16S rRNA Sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus
    • Kawamura Y, Hou Sultana X-GF, Miura H, Ezaki T. 1995. Determination of 16S rRNA Sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus. Int. J. Syst. Bacteriol. 45:406-408.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 406-408
    • Kawamura, Y.1    Hou Sultana, X.-G.F.2    Miura, H.3    Ezaki, T.4
  • 22
    • 0032878954 scopus 로고    scopus 로고
    • Genetic approaches to the identification of the mitis group within the genus Streptococcus
    • Kawamura Y, Whiley RA, Shu SE, Ezaki T, Hardie JM. 1999. Genetic approaches to the identification of the mitis group within the genus Streptococcus. Microbiology 145:2605-2613. (Pubitemid 29454379)
    • (1999) Microbiology , vol.145 , Issue.9 , pp. 2605-2613
    • Kawamura, Y.1    Whiley, R.A.2    Shu, S.-E.3    Ezaki, T.4    Hardie, J.M.5
  • 23
    • 49949099910 scopus 로고    scopus 로고
    • Evolution of Streptococcus pneumoniae and its close commensal relatives
    • Kilian M, et al. 2008. Evolution of Streptococcus pneumoniae and its close commensal relatives. PLoS One 3:7.
    • (2008) PLoS One , vol.3 , pp. 7
    • Kilian, M.1
  • 24
    • 20544449064 scopus 로고    scopus 로고
    • Phenotypic and genotypic discrepancy of Streptococcus pneumoniae strains isolated from Asian countries
    • Ko KS, et al. 2005. Phenotypic and genotypic discrepancy of Streptococcus pneumoniae strains isolated from Asian countries. FEMS Immunol. Med. Microbiol. 45:63-70.
    • (2005) FEMS Immunol. Med. Microbiol. , vol.45 , pp. 63-70
    • Ko, K.S.1
  • 27
    • 4644244445 scopus 로고    scopus 로고
    • Pneumolysin is a key factor in misidentification of macrolide-resistant Streptococcus pneumoniae and is a putative virulence factor of S. mitis and other streptococci
    • DOI 10.1128/JCM.42.9.4355-4357.2004
    • Neeleman C, Klaassen CH, Klomberg DM, de Valk HA, Mouton JW. 2004. Pneumolysin is a key factor in misidentification of macrolideresistant Streptococcus pneumoniae and is a putative virulence factor of S. mitis and other streptococci. J. Clin. Microbiol. 42:4355-4357. (Pubitemid 39296176)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.9 , pp. 4355-4357
    • Neeleman, C.1    Klaassen, C.H.W.2    Klomberg, D.M.3    De Valk, H.A.4    Mouton, J.W.5
  • 28
    • 65249108109 scopus 로고    scopus 로고
    • Identification of clinically relevant nonhemolytic streptococci on the basis of sequence analysis of 16S-23S intergenic spacer region and partial gdh gene
    • Nielsen XC, Justesen US, Dargis R, Kemp M, Christensen JJ. 2009. Identification of clinically relevant nonhemolytic streptococci on the basis of sequence analysis of 16S-23S intergenic spacer region and partial gdh gene. J. Clin. Microbiol. 47:932-939.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 932-939
    • Nielsen, X.C.1    Justesen, U.S.2    Dargis, R.3    Kemp, M.4    Christensen, J.J.5
  • 29
  • 30
    • 77957319699 scopus 로고    scopus 로고
    • Identification of the cpsA gene as a specific marker for the discrimination of Streptococcus pneumoniae from viridans group streptococci
    • Park HK, et al. 2010. Identification of the cpsA gene as a specific marker for the discrimination of Streptococcus pneumoniae from viridans group streptococci. J. Med. Microbiol. 59:1146-1152.
    • (2010) J. Med. Microbiol. , vol.59 , pp. 1146-1152
    • Park, H.K.1
  • 31
    • 77749328050 scopus 로고    scopus 로고
    • rpoA is a useful gene for identification and classification of Streptococcus pneumoniae from the closely related viridans group streptococci
    • Park HK, Yoon JW, Shin JW, Kim JY, Kim W. 2010. rpoA is a useful gene for identification and classification of Streptococcus pneumoniae from the closely related viridans group streptococci. FEMS Microbiol. Lett. 305: 58-64.
    • (2010) FEMS Microbiol. Lett. , vol.305 , pp. 58-64
    • Park, H.K.1    Yoon, J.W.2    Shin, J.W.3    Kim, J.Y.4    Kim, W.5
  • 33
    • 34249740260 scopus 로고    scopus 로고
    • Multilocus sequence analysis of atypical Borrelia burgdorferi sensu lato isolates - Description of Borrelia californiensis sp. nov., and genomospecies 1 and 2
    • DOI 10.1016/j.ijmm.2007.01.006, PII S1438422107000215
    • Postic D, Garnier M, Baranton G. 2007. Multilocus sequence analysis of atypical Borrelia burgdorferi sensu lato isolates- description of Borrelia californiensis sp. nov., and genomospecies 1 and 2. Int. J. Med. Microbiol. 297:263-271. (Pubitemid 46830039)
    • (2007) International Journal of Medical Microbiology , vol.297 , Issue.4 , pp. 263-271
    • Postic, D.1    Garnier, M.2    Baranton, G.3
  • 34
    • 0031974386 scopus 로고    scopus 로고
    • Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase
    • Poyart C, Quesne G, Coulon S, Berche P, Trieu-Cuot P. 1998. Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J. Clin. Microbiol. 36: 41-47. (Pubitemid 28047430)
    • (1998) Journal of Clinical Microbiology , vol.36 , Issue.1 , pp. 41-47
    • Poyart, C.1    Quesne, G.2    Coulon, S.3    Berche, P.4    Trieu-Cuot, P.5
  • 35
    • 10044242590 scopus 로고    scopus 로고
    • Characterization of LytA-like N-acetylmuramoyl-L-alanine amidases from two new Streptococcus mitis bacteriophages provides insights into the properties of the major pneumococcal autolysin
    • DOI 10.1128/JB.186.24.8229-8239.2004
    • Romero P, López R, García E. 2004. Characterization of LytA-like Nacetylmuramoyl- L-alanine amidases from two new Streptococcus mitis bacteriophages provides insights into the properties of the major pneumococcal autolysin. J. Bacteriol. 186:8229-8239. (Pubitemid 39603212)
    • (2004) Journal of Bacteriology , vol.186 , Issue.24 , pp. 8229-8239
    • Romero, P.1    Lopez, R.2    Garcia, E.3
  • 36
    • 70350654363 scopus 로고    scopus 로고
    • What recent ribosome structures have revealed about the mechanism of translation
    • Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461: 1234-1242.
    • (2009) Nature , vol.461 , pp. 1234-1242
    • Schmeing, T.M.1    Ramakrishnan, V.2
  • 39
    • 0042622239 scopus 로고    scopus 로고
    • NEBcutter: A program to cleave DNA with restriction enzymes
    • DOI 10.1093/nar/gkg526
    • Vincze T, Posfai J, Roberts RJ. 2003. NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res. 31:3688-3691. (Pubitemid 37442224)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3688-3691
    • Vincze, T.1    Posfai, J.2    Roberts, R.J.3
  • 40
    • 0033953035 scopus 로고    scopus 로고
    • Genetic relationships between clinical isolates of Streptococcus pneumoniae, Streptococcus oralis, and Streptococcus mitis: Characterization of 'atypical' pneumococci and organisms allied to S. mitis harboring S. pneumoniae virulence factor-encoding genes
    • DOI 10.1128/IAI.68.3.1374-1382.2000
    • Whatmore AM, et al. 2000. Genetic relationships between clinical isolates of Streptococcus pneumoniae, Streptococcus oralis, and Streptococcus mitis: characterization of "atypical" pneumococci and organisms allied to S. mitis harboring S. pneumoniae virulence factor-encoding genes. Infect. Immun. 68:1374-1382. (Pubitemid 30108534)
    • (2000) Infection and Immunity , vol.68 , Issue.3 , pp. 1374-1382
    • Whatmore, A.M.1    Efstratiou, A.2    Pickerill, A.P.3    Broughton, K.4    Woodard, G.5    Sturgeon, D.6    George, R.7    Dowson, C.G.8
  • 41
    • 79951495604 scopus 로고    scopus 로고
    • recA-based PCR assay for accurate differentiation of Streptococcus pneumoniae from other viridans streptococci
    • Zbinden A, Köhler N, Bloemberg GV. 2011. recA-based PCR assay for accurate differentiation of Streptococcus pneumoniae from other viridans streptococci. J. Clin. Microbiol. 49:523-527.
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 523-527
    • Zbinden, A.1    Köhler, N.2    Bloemberg, G.V.3


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