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Volumn 49, Issue 2, 2011, Pages 523-527

recA-based PCR assay for accurate differentiation of Streptococcus pneumoniae from other viridans streptococci

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 79951495604     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01450-10     Document Type: Article
Times cited : (47)

References (46)
  • 1
    • 67651012770 scopus 로고    scopus 로고
    • Is quantitative PCR for the pneumolysin (ply) gene useful for detection of pneumococcal lower respiratory tract infection?
    • Abdeldaim, G., et al. 2009. Is quantitative PCR for the pneumolysin (ply) gene useful for detection of pneumococcal lower respiratory tract infection? Clin. Microbiol. Infect. 15:565-570.
    • (2009) Clin. Microbiol. Infect. , vol.15 , pp. 565-570
    • Abdeldaim, G.1
  • 2
    • 0035139646 scopus 로고    scopus 로고
    • In vitro activities of the new ketolide HMR 3647 (telithromycin) in comparison with those of eight other antibiotics against viridans group streptococci isolated from blood of neutropenic patients with cancer
    • Alcaide, F., et al. 2001. In vitro activities of the new ketolide HMR 3647 (telithromycin) in comparison with those of eight other antibiotics against viridans group streptococci isolated from blood of neutropenic patients with cancer. Antimicrob. Agents Chemother. 45:624-626.
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 624-626
    • Alcaide, F.1
  • 4
    • 0000353349 scopus 로고    scopus 로고
    • Approaches for identification of microorganisms
    • Boettger, E. C. 1996. Approaches for identification of microorganisms. ASM News 61:247-250.
    • (1996) ASM News , vol.61 , pp. 247-250
    • Boettger, E.C.1
  • 5
    • 2442499501 scopus 로고    scopus 로고
    • Comparison of conventional and molecular methods for identification of aerobic catalase-negative gram-positive cocci in the clinical laboratory
    • Bosshard, P. P., S. Abels, M. Altwegg, E. C. Boettger, and R. Zbinden. 2004. Comparison of conventional and molecular methods for identification of aerobic catalase-negative gram-positive cocci in the clinical laboratory. J. Clin. Microbiol. 42:2065-2073.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 2065-2073
    • Bosshard, P.P.1    Abels, S.2    Altwegg, M.3    Boettger, E.C.4    Zbinden, R.5
  • 6
    • 0041919471 scopus 로고    scopus 로고
    • Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation)
    • DOI 10.1128/JCM.41.9.4134-4140.2003
    • Bosshard, P. P., S. Abels, R. Zbinden, E. C. Boettger, and M. Altwegg. 2003. Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation). J. Clin. Microbiol. 41: 4134-4140. (Pubitemid 37099676)
    • (2003) Journal of Clinical Microbiology , vol.41 , Issue.9 , pp. 4134-4140
    • Bosshard, P.P.1    Abels, S.2    Zbinden, R.3    Bottger, E.C.4    Altwegg, M.5
  • 7
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory
    • Bosshard, P. P., et al. 2006. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J. Clin. Microbiol. 44:1359-1366.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1
  • 8
    • 5644227319 scopus 로고    scopus 로고
    • Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
    • Clarridge, J. E., III. 2004. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin. Microbiol. Rev. 17:840-862.
    • (2004) Clin. Microbiol. Rev. , vol.17 , pp. 840-862
    • Clarridge III, J.E.1
  • 9
    • 62649124308 scopus 로고    scopus 로고
    • Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniae Spain23F ST81
    • Croucher, N. J., et al. 2009. Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniae Spain23F ST81. J. Bacteriol. 191:1480-1489.
    • (2009) J. Bacteriol. , vol.191 , pp. 1480-1489
    • Croucher, N.J.1
  • 10
    • 65549108485 scopus 로고    scopus 로고
    • Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae sero-type 14
    • Ding, F., et al. 2009. Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae sero-type 14. BMC Genomics 10:158.
    • (2009) BMC Genomics , vol.10 , pp. 158
    • Ding, F.1
  • 11
    • 0034961107 scopus 로고    scopus 로고
    • Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate
    • Dopazo, J., et al. 2001. Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate. Microb. Drug Resist. 7:99-125.
    • (2001) Microb. Drug Resist. , vol.7 , pp. 99-125
    • Dopazo, J.1
  • 12
    • 1242314287 scopus 로고    scopus 로고
    • RpoB Gene Sequence-Based Identification of Aerobic Gram-Positive Cocci of the Genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella
    • DOI 10.1128/JCM.42.2.497-504.2004
    • Drancourt, M., V. Roux, P. E. Fournier, and D. Raoult. 2004. rpoB gene sequence-based identification of aerobic Gram-positive cocci of the genera Streptococcus, Enterococcus, Gemella, Abiotrophia, and Granulicatella. J. Clin. Microbiol. 42:497-504. (Pubitemid 38222619)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.2 , pp. 497-504
    • Drancourt, M.1    Roux, V.2    Fournier, P.-E.3    Raoult, D.4
  • 13
    • 0029610851 scopus 로고
    • The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
    • Eisen, J. A. 1995. The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of recAs and 16S rRNAs from the same species. J. Mol. Evol. 41:1105-1123. (Pubitemid 26020088)
    • (1995) Journal of Molecular Evolution , vol.41 , Issue.6 , pp. 1105-1123
    • Eisen, J.A.1
  • 14
    • 77953673124 scopus 로고    scopus 로고
    • The development of a 16S rRNA gene based PCR for the identification of Streptococcus pneumoniae and comparison with four other species specific PCR assays
    • El Aila, N. A., et al. 2010. The development of a 16S rRNA gene based PCR for the identification of Streptococcus pneumoniae and comparison with four other species specific PCR assays. BMC Infect. Dis. 10:104.
    • (2010) BMC Infect. Dis. , vol.10 , pp. 104
    • El Aila, N.A.1
  • 15
    • 0036779816 scopus 로고    scopus 로고
    • What happened to the streptococci: Overview of taxonomic and nomenclature changes
    • Facklam, R. 2002. What happened to the streptococci: overview of taxonomic and nomenclature changes. Clin. Microbiol. Rev. 15:613-630.
    • (2002) Clin. Microbiol. Rev. , vol.15 , pp. 613-630
    • Facklam, R.1
  • 16
    • 70350515921 scopus 로고    scopus 로고
    • Partial sequence comparison of the rpoB, sodA, groEL and gyrB genes within the genus Streptococcus
    • Glazunova, O. O., D. Raoult, and V. Roux. 2009. Partial sequence comparison of the rpoB, sodA, groEL and gyrB genes within the genus Streptococcus. Int. J. Syst. Evol. Microbiol. 59:2317-2322.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 2317-2322
    • Glazunova, O.O.1    Raoult, D.2    Roux, V.3
  • 17
    • 0034837298 scopus 로고    scopus 로고
    • Quantitative detection of Streptococcus pneumoniae in nasopharyngeal secretions by real-time PCR
    • Greiner, O., et al. 2001. Quantitative detection of Streptococcus pneumoniae in nasopharyngeal secretions by real-time PCR. J. Clin. Microbiol. 39:3129-3134.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3129-3134
    • Greiner, O.1
  • 18
    • 33947236210 scopus 로고    scopus 로고
    • Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of VITEK 2
    • Haanpera, M., J. Jalava, P. Huovinen, O. Meurman, and K. Rantakokko- Jalava. 2007. Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of VITEK 2. J. Clin. Microbiol. 45:762-770.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 762-770
    • Haanpera, M.1    Jalava, J.2    Huovinen, P.3    Meurman, O.4    Rantakokko-Jalava, K.5
  • 19
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi, T., et al. 2001. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8:11-22.
    • (2001) DNA Res. , vol.8 , pp. 11-22
    • Hayashi, T.1
  • 20
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 21
    • 30744465358 scopus 로고    scopus 로고
    • Use of phylogenetic and phenotypic analyses to identify nonhemolytic streptococci isolated from bacteremic patients
    • Hoshino, T., T. Fujiwara, and M. Kilian. 2005. Use of phylogenetic and phenotypic analyses to identify nonhemolytic streptococci isolated from bacteremic patients. J. Clin. Microbiol. 43:6073-6085.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 6073-6085
    • Hoshino, T.1    Fujiwara, T.2    Kilian, M.3
  • 22
    • 0034806849 scopus 로고    scopus 로고
    • Genome of the bacterium Streptococcus pneumoniae strain R6
    • Hoskins, J., et al. 2001. Genome of the bacterium Streptococcus pneumoniae strain R6. J. Bacteriol. 183:5709-5717.
    • (2001) J. Bacteriol. , vol.183 , pp. 5709-5717
    • Hoskins, J.1
  • 23
    • 0028924690 scopus 로고
    • Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus
    • Kawamura, Y., X. G. Hou, F. Sultana, H. Miura, and T. Ezaki. 1995. Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus. Int. J. Syst. Bacteriol. 45:406-408.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 406-408
    • Kawamura, Y.1    Hou, X.G.2    Sultana, F.3    Miura, H.4    Ezaki, T.5
  • 24
    • 0032878954 scopus 로고    scopus 로고
    • Genetic approaches to the identification of the mitis group within the genus Streptococcus
    • Kawamura, Y., R. A. Whiley, S. E. Shu, T. Ezaki, and J. M. Hardie. 1999. Genetic approaches to the identification of the mitis group within the genus Streptococcus. Microbiology 145(Pt 9):2605-2613.
    • (1999) Microbiology , vol.145 , Issue.PART 9 , pp. 2605-2613
    • Kawamura, Y.1    Whiley, R.A.2    Shu, S.E.3    Ezaki, T.4    Hardie, J.M.5
  • 25
    • 33644882529 scopus 로고    scopus 로고
    • Characteristics of Streptococcus pseudopneumoniae isolated from purulent sputum samples
    • Keith, E. R., R. G. Podmore, T. P. Anderson, and D. R. Murdoch. 2006. Characteristics of Streptococcus pseudopneumoniae isolated from purulent sputum samples. J. Clin. Microbiol. 44:923-927.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 923-927
    • Keith, E.R.1    Podmore, R.G.2    Anderson, T.P.3    Murdoch, D.R.4
  • 26
    • 17044364421 scopus 로고    scopus 로고
    • Comparison between rpoB and 16S rRNA gene sequencing for molecular identification of 168 clinical isolates of Corynebacterium
    • Khamis, A., D. Raoult, and B. La Scola. 2005. Comparison between rpoB and 16S rRNA gene sequencing for molecular identification of 168 clinical isolates of Corynebacterium. J. Clin. Microbiol. 43:1934-1936.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1934-1936
    • Khamis, A.1    Raoult, D.2    La Scola, B.3
  • 27
    • 49949099910 scopus 로고    scopus 로고
    • Evolution of Streptococcus pneumoniae and its close commensal relatives
    • Kilian, M., et al. 2008. Evolution of Streptococcus pneumoniae and its close commensal relatives. PLoS One 3:e2683.
    • (2008) PLoS One , vol.3
    • Kilian, M.1
  • 28
    • 33751205368 scopus 로고    scopus 로고
    • Pneumolysin polymerase chain reaction for diagnosis of pneumococcal pneumonia and empyema in children
    • Lahti, E., et al. 2006. Pneumolysin polymerase chain reaction for diagnosis of pneumococcal pneumonia and empyema in children. Eur. J. Clin. Microbiol. Infect. Dis. 25:783-789.
    • (2006) Eur. J. Clin. Microbiol. Infect. Dis. , vol.25 , pp. 783-789
    • Lahti, E.1
  • 29
    • 33845957666 scopus 로고    scopus 로고
    • Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unen-capsulated laboratory strain R6
    • Lanie, J. A., et al. 2007. Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unen-capsulated laboratory strain R6. J. Bacteriol. 189:38-51.
    • (2007) J. Bacteriol. , vol.189 , pp. 38-51
    • Lanie, J.A.1
  • 30
    • 0027359258 scopus 로고
    • Evolution of the recA gene and the molecular phylogeny of bacteria
    • Lloyd, A. T., and P. M. Sharp. 1993. Evolution of the recA gene and the molecular phylogeny of bacteria. J. Mol. Evol. 37:399-407.
    • (1993) J. Mol. Evol. , vol.37 , pp. 399-407
    • Lloyd, A.T.1    Sharp, P.M.2
  • 31
    • 0033827722 scopus 로고    scopus 로고
    • DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III
    • Mahenthiralingam, E., et al. 2000. DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J. Clin. Microbiol. 38:3165-3173.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3165-3173
    • Mahenthiralingam, E.1
  • 32
    • 33644521597 scopus 로고    scopus 로고
    • Sequencing and staphylococci identification
    • Mellmann, A., et al. 2006. Sequencing and staphylococci identification. Emerg. Infect. Dis. 12:333-336.
    • (2006) Emerg. Infect. Dis. , vol.12 , pp. 333-336
    • Mellmann, A.1
  • 34
    • 0003575036 scopus 로고    scopus 로고
    • 9th ed. American Society for Microbiology, Washington, DC
    • Murray, P., et al. (ed.). 2007. Manual of clinical microbiology, vol. 1, 9th ed. American Society for Microbiology, Washington, DC.
    • (2007) Manual of Clinical Microbiology , vol.1
    • Murray, P.1
  • 35
    • 65249108109 scopus 로고    scopus 로고
    • Identification of clinically relevant nonhemolytic streptococci on the basis of sequence analysis of 16S-23S intergenic spacer region and partial gdh gene
    • Nielsen, X. C., U. S. Justesen, R. Dargis, M. Kemp, and J. J. Christensen. 2009. Identification of clinically relevant nonhemolytic streptococci on the basis of sequence analysis of 16S-23S intergenic spacer region and partial gdh gene. J. Clin. Microbiol. 47:932-939.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 932-939
    • Nielsen, X.C.1    Justesen, U.S.2    Dargis, R.3    Kemp, M.4    Christensen, J.J.5
  • 36
    • 0031974386 scopus 로고    scopus 로고
    • Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase
    • Poyart, C., G. Quesne, S. Coulon, P. Berche, and P. Trieu-Cuot. 1998. Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J. Clin. Microbiol. 36:41-47.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 41-47
    • Poyart, C.1    Quesne, G.2    Coulon, S.3    Berche, P.4    Trieu-Cuot, P.5
  • 37
    • 0025005094 scopus 로고
    • Differentiation of Mycobacterium species by direct sequencing of amplified DNA
    • Rogall, T., T. Flohr, and E. C. Boettger. 1990. Differentiation of Mycobacterium species by direct sequencing of amplified DNA. J. Gen. Microbiol. 136:1915-1920.
    • (1990) J. Gen. Microbiol. , vol.136 , pp. 1915-1920
    • Rogall, T.1    Flohr, T.2    Boettger, E.C.3
  • 38
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 79951476422 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 40
    • 65249137591 scopus 로고    scopus 로고
    • Diagnosis of Streptococcus pneumoniae infections in adults with bacteremia and community-acquired pneumonia: Clinical comparison of pneumococcal PCR and urinary antigen detection
    • Smith, M. D., et al. 2009. Diagnosis of Streptococcus pneumoniae infections in adults with bacteremia and community-acquired pneumonia: clinical comparison of pneumococcal PCR and urinary antigen detection. J. Clin. Microbiol. 47:1046-1049.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 1046-1049
    • Smith, M.D.1
  • 41
    • 0035919670 scopus 로고    scopus 로고
    • Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
    • Tettelin, H., et al. 2001. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293:498-506.
    • (2001) Science , vol.293 , pp. 498-506
    • Tettelin, H.1
  • 43
    • 25144436280 scopus 로고    scopus 로고
    • Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
    • Thompson, F. L., et al. 2005. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol. 71:5107-5115.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 5107-5115
    • Thompson, F.L.1
  • 44
    • 0041810300 scopus 로고    scopus 로고
    • Streptococcus oligofermentans sp. nov., a novel oral isolate from caries-free humans
    • Tong, H., X. Gao, and X. Dong. 2003. Streptococcus oligofermentans sp. nov., a novel oral isolate from caries-free humans. Int. J. Syst. Evol. Microbiol. 53:1101-1104.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1101-1104
    • Tong, H.1    Gao, X.2    Dong, X.3
  • 45
    • 0033953035 scopus 로고    scopus 로고
    • Genetic relationships between clinical isolates of Streptococcus pneumoniae, Streptococcus oralis, and Streptococcus mitis: Characterization of "atypical" pneumococci and organisms allied to S. mitis harboring S. pneumoniae virulence factor-encoding genes
    • Whatmore, A. M., et al. 2000. Genetic relationships between clinical isolates of Streptococcus pneumoniae, Streptococcus oralis, and Streptococcus mitis: characterization of "atypical" pneumococci and organisms allied to S. mitis harboring S. pneumoniae virulence factor-encoding genes. Infect. Immun. 68:1374-1382.
    • (2000) Infect. Immun. , vol.68 , pp. 1374-1382
    • Whatmore, A.M.1
  • 46
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • Zeigler, D. R. 2003. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol. 53:1893-1900.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1893-1900
    • Zeigler, D.R.1


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