Stochastic modelling of tree annual shoot dynamics

Annals of Forest Science

Volumn 69, Issue 2, 2012, Pages 153-165

  De Reffye, Philippe ^a   Kang, MengZhen ^b   Hua, Jing ^b   Auclair, Daniel ^a  

^a UMR AMAP   (France)

^b INSTITUTE OF AUTOMATION   (China)

Author keywords

Architectural tree model; GreenLab; Meristem functioning; Monocyclism; Polycyclism; Renewal theory

Indexed keywords

BIOMASS; COMPUTER SIMULATION; DEVELOPMENTAL BIOLOGY; FORESTRY MODELING; MORTALITY; SHOOT; STOCHASTICITY; TREE;

EID: 84862015321     PISSN: 12864560     EISSN: 1297966X     Source Type: Journal    
DOI: 10.1007/s13595-011-0151-6     Document Type: Conference Paper

References (41)

1. Barczi JF, Rey H, Caraglio Y, de Reffye P, Barthélémy D, Dong Q, Fourcaud T (2008) AMAP-Sim: a structural whole-plant simulator based on botanical knowledge and designed to host external functional models. Ann Bot 101:1125-1138
2. Barthélémy D, Caraglio Y (2007) Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny. Ann Bot 99:375-407 (Pubitemid 47364563)
3. Barthélémy D, Edelin C, Hallé F (1989) Architectural concepts for tropical trees. In: Holm-Nielsen LB, Balslev H (eds) Tropical forests: botanical dynamics, speciation and diversity. Academic, London, pp 89-100
4. Biliouris D, Van der Zande D, Verstraeten WW, Muys B, Coppin P (2009) Assessing the impact of canopy structure simplification in common multilayer models on irradiance absorption estimates of measured and virtually created Fagus silvatica (L.) stands. Remote Sens 1:1009-1027
5. Bosanac B, Zanchi P (2002) Onyx tree conifer user's manual, version 5.1. Onyx Computing Inc, Cambridge
6. Caraglio Y, Elguero E, Mialet I, Rey H (1990) Le Peuplier: modélisation et simulation de son architecture. CIRAD/IDF report, Montpellier, FR
7. Dabadie P, de Reffye P, Dinouard P (1991) Modelling bamboo growth and architecture: Phyllostachys viridi-glaucescens A & C Rivière. J Am Bamboo Soc 8:65-79
8. De Jong T, Da Silva D (2010) FSPM2010: proceedings of the 6th international workshop on functional-structural plant models. Univ California, Davis
9. de Reffye P, Dinouard P, Barthélémy D (1991a) Modélisation et simulation de l'architecture de l'Orme du Japon Zelkova serrata (Thunb) Makino (Ulmaceae): la notion d'axe de référence. Naturalia Monspeliensia Sp Issue:251-266
10. de Reffye P, Elguero E, Costes E (1991b) Growth units construction in trees: a stochastic approach. Acta Biotheor 39:325-342
11. de Reffye P, Houllier F, Blaise F, Barthélémy D, Dauzat J, Auclair D (1995) A model simulating above- and below-ground tree architecture with agroforestry applications. Agrofor Syst 30:175-197 (Pubitemid 26452889)
12. de Reffye P, Heuvelink E, Barthélémy D, Cournède PH (2008) Plant growth models. In: Jorgensen SE, Fath BD (eds) Encyclopedia of ecology, vol 4. Elsevier, Amsterdam, pp 2824-2838
13. Deussen O, Lintermann B (2005) Digital design of nature: computer generated plants and organics. Springer, Berlin
14. Feller W (1968) An introduction to probability theory and its applications, vol. 1, 3rd edn. Wiley, New York
15. Feng L, de Reffye P, Dreyfus P, Auclair D (2012) Connecting an architectural plant model to a forest stand dynamics model- application to Austrian black pine stand visualization. Ann For Sci. doi:10.1007/s13595-011- 0144-5
16. Galopin G, Mauget JC, Morel P (2010) Morphogenetic analysis of the phenotypic variability of the architectural unit of Hydrangea macrophylla. Ann For Sci 67. doi:10.1051/forest/2009115
17. Godin C (2000) Representing and encoding plant architecture: a review. Ann For Sci 57:413-438
18. Griffon S, Nespoulous A, Cheylan JP, Marty P, Auclair D (2011) Virtual reality for cultural landscape visualization. Virtual Reality. doi:0.1007/s10055-010-0160-z
19. Guedon Y, Puntieri J, Sabatier S, Barthélémy D (2006) Relative extents of preformation and neoformation in tree shoots: analysis by a deconvolution method. Ann Bot 98:835-844 (Pubitemid 44545499)
20. Guo Y, Ma Y, Zhan Z, Li B, Dingkuhn M, Luquet D, de Reffye P (2006) Parameter optimization and field validation of the functional-structural model GREENLAB for maize. Ann Bot 97:217-230 (Pubitemid 43175886)
21. Hallé F, Oldeman RAA, Tomlinson PB (1978) Tropical trees and forests. Springer, Berlin
22. Jaeger M, de Reffye P (1992) Basic concepts of computer simulation of plant growth. J Biosci 17:275-291
23. Kang MZ, de Reffye P, Barczi JF, Hu BG, Houllier F (2003) Stochastic 3D tree simulation using substructure instancing. In: Hu BG, Jaeger M (eds) Plant growth modelling and applications. Tsinghua University Press, Beijing, pp 154-168
24. Kang MZ, Cournède PH, de Reffye P, Auclair D, Hu BG (2008) Analytical study of a stochastic plant growth model: application to the GreenLab model. Math Comput Simul 78:57-75 (Pubitemid 351540836)
25. Kimmins JP, Blanco JA, Seely B, Welham C, Scoullar K (2008) Complexity in modelling forest ecosystems: how much is enough? For Ecol Manag 256:1646-1658
26. Kohyama T, Ojima DS, Pitelka LF (2005) Forest ecosystems and environments: scaling up from shoot module to watershed. Springer, Berlin
27. Kurth W (1994) Morphological models of plant growth: possibilities and ecological relevance. Ecol Model 75-76:299-308
28. Le Roux X, Lacointe A, Escobar-Guttierez A, Le Dizes S (2001) Carbon-based models of individual tree growth: a critical appraisal. Ann For Sci 58:469-506 (Pubitemid 32818114)
29. Mäkelä A, Landsberg J, Ek AR et al (2000) Process-based models for forest ecosystem management: current state of the art and challenges for practical implementation. Tree Physiol 20:289-298 (Pubitemid 30244391)
30. Mathieu A, Cournède PH, Barthélémy D, de Reffye P (2008) Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning. Ann Bot 101:1233-1242
31. Mathieu A, Cournède PH, Letort V, Barthélémy D, de Reffye P (2009) A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition. Ann Bot 103:1173-1186
32. Melson SL, Harmon ME, Fried JS, Domingo JB (2011) Estimates of live-tree carbon stores in the Pacific Northwest are sensitive to model selection. Carbon Balance Manag 6:2
33. Parsons RA, Mell WE, McCauley P (2011) Linking 3D spatial models of fuels and fire: effects of spatial heterogeneity on fire behavior. Ecol Model 222:679-691
34. Perttunen J, Sievänen R, Nikinmaa E, Salminen H, Saarenmaa H, Väkevä J (1996) LIGNUM: a tree model based on simple structural units. Ann Bot 77:87-98
35. Pretzsch H (2009) Forest dynamics, growth and yield. Springer, Berlin
36. Prusinkiewicz P, Lindenmayer A (1990) The algorithmic beauty of plants. Springer, New York
37. Sabatier S, Barthélémy D (2001) Annual shoot morphology and architecture in Persian Walnut, Juglans regia L. (Juglandaceae). Acta Hortic 544:255-264 (Pubitemid 33259730)
38. Vos J, Marcelis LFM, Evers JB (2007) Functional-structural plant modelling in crop production-adding a dimension. In: Vos J, Marcelis LFM, de Visser PHB, Struik PC, Evers JB (eds) Functional-structural plant modelling in crop production. Springer, Amsterdam, pp 1-12
39. Vos J, Evers JB, Buck-Sorlin GH, Andrieu B, Chelle M, de Visser PHB (2010) Functional-structural plant modelling: a new versatile tool in crop science. J Exp Bot 61:2101-2115
40. Wang F, Kang MZ, Lu Q, Letort V, Han H, Guo Y, de Reffye P, Li B (2011) A stochastic model of tree architecture and biomass partitioning: application to Mongolian Scots pines. Ann Bot 107:781-792
41. Yan HP, Kang MZ, de Reffye P, Dingkuhn M (2004) A dynamic, architectural plant model simulating resource-dependent growth. Ann Bot 93:591-602 (Pubitemid 41295614)