Evaluation of blood collection tubes using selected reaction monitoring MS: Implications for proteomic biomarker studies

Proteomics

Volumn 10, Issue 10, 2010, Pages 2050-2056

  Randall, Sarah A ^a   McKay, Matthew J ^a   Molloy, Mark P ^a  

^a MACQUARIE UNIVERSITY   (Australia)

Author keywords

Biomarker; Biomedicine mass spectrometry; Plasma; Quantitation; Selected reaction monitoring

Indexed keywords

BIOLOGICAL MARKER; PLASMA PROTEIN; PROTEINASE INHIBITOR;

ARTICLE; ASSAY; BLOOD SAMPLING; CONTROLLED STUDY; HUMAN; HUMAN EXPERIMENT; MASS SPECTROMETRY; NORMAL HUMAN; PRIORITY JOURNAL; PROTEOMICS; QUANTITATIVE ANALYSIS; TUBE;

BIOLOGICAL MARKERS; BLOOD SPECIMEN COLLECTION; HUMANS; MASS SPECTROMETRY; PROTEOMICS;

EID: 77952327054     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900517     Document Type: Article

References (30)

1. Perkins, G. L., Slater, E. D., Sanders, G. K., Prichard, J. G., Serum tumor markers. Am. Fam. Physician 2003, 68, 1075-1082.
2. Zakynthinos, E., Pappa, N., Inflammatory biomarkers in coronary artery disease. J. Cardiol. 2009, 53, 317-333.
3. Anderson, L., Candidate-based proteomics in the search for biomarkers of cardiovascular disease. J. Physiol. 2005, 563, 23-60. (Pubitemid 40340365)
4. Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
5. Anderson, N. L., Anderson, N. G., The human plasma proteome: History, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1, 845-867.
6. Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B. et al., Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by antipeptide antibodies (SISCAPA). J. Proteome Res. 2004, 3, 235-244.
7. Villanueva, J., Shaffer, D. R., Philip, J., Chaparro, C. A. et al., Differential exoprotease activities confer tumor-specific serum peptidome patterns. J. Clin. Invest. 2006, 116, 271-284.
8. Hsieh, S.-Y., Chen, R.-K., Pan, Y.-H., Lee, H.-L., Systematical evaluation of the effects of sample collection procedures on low-molecular-weight serum/plasma proteome profiling. Proteomics 2006, 6, 3189-3198.
9. Aebersold, R., Anderson, L., Caprioli, R., Druker, B. et al., Perspective: A program to improve protein biomarker discovery for cancer. J. Proteome Res. 2005, 4, 1104-1109. (Pubitemid 41208668)
10. Drake, R. R., Cazares, L., Semmes, O. J., Mining the low molecular weight proteome of blood. Proteomics Clin. Appl. 2007, 1, 758-768.
11. Drake, S. K., Bowen, R. A. R., Remaley, A. T., Hortin, G. L., Potential interferences from blood collection tubes in mass spectrometric analyses of serum polypeptides. Clin. Chem. 2004, 50, 2398-2401.
12. Ludwig, J. A., Weinstein, J. N., Biomarkers in cancer staging, prognosis and treatment selection. Nat. Rev. Cancer 2005, 11, 845-856. (Pubitemid 41746029)
13. McKay, M. J., Sherman, J., Laver, M. T., Baker, M. S. et al., The development of multiple reaction monitoring assays for liver-derived plasma proteins. Proteomics Clin. Appl. 2007, 1, 1570-1581.
14. Sadagopan, N. P., Li, W., Cook, J. A., Galvan, B. et al., Investigation of EDTA anticoagulant in plasma to improve the throughput of liquid chromatography/tandem mass spectrometric assays. Rapid Commun. Mass Spectrom. 2003, 17, 1065-1070. (Pubitemid 36538200)
15. Shen, Y., Kim, J., Strittmatter, E. F., Jacobs, J. M. et al., Characterization of the human blood plasma proteome. Proteomics 2005, 5, 4034-4045. (Pubitemid 41502498)
16. Yi, J., Kim, C., Gelfand, C. A., Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma. J. Proteome Res. 2007, 6, 1768-1781. (Pubitemid 46814501)
17. Yi, J., Liu, Z., Craft, D., O'Mullan, P. et al., Intrinsic peptidase activity causes a sequential multi-step reaction (SMSR) in digestion of human plasma peptides. J. Proteome Res. 2008, 7, 5112-5118.
18. Koomen, J. M., Li, D., Xiao, L.-c., Liu, T. C. et al., Characterization of the low molecular weight human serum proteome. J. Proteome Res. 2005, 4, 972-981.
19. Keshishian, H., Addona, T., Burgess, M., Kuhn, E., et al., Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2007, 6, 2212-2229.
20. Addona, T. A., Abbatiello, S. E., Schilling, B., Skates, S. J. et al., Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat. Biotech. 2009, 27, 633-641.
21. Kuzyk, M. A., Smith, D., Yang, J., Cross, T. J. et al., MRM-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol. Cell. Proteomics 2009, 8, 1860-1877.
22. Chiu, C., Randall, S., Molloy, M. P., Recent progress in selected reaction monitoring MS-driven plasma protein biomarker analysis. Bioanalysis 2009, 1, 847-855.
23. Aebersold, R., Mann, M., Mass spectrometry-based proteomics. Nature 2003, 422, 198-207.
24. Ong, S.-E., Mann, M., Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 2005, 1, 252-262.
25. Polanski, M., Anderson, N. L., A list of candidate cancer biomarkers for targeted proteomics. Biomarker Insights 2006, 2, 1-48.
26. Gabay, C., Kushner, I., Acute-phase proteins and other systemic responses to inflammation. N. Engl. J. Med. 1999, 340, 448-454. (Pubitemid 29084777)
27. Urieli-Shoval, S., Linke, R. P., Matzner, Y., Expression and function of serum amyloid A, a major acute-phase protein, in normal and disease states. Curr. Opin. Hematol. 2000, 7, 64-69. (Pubitemid 30007690)
28. Schaller, J., Gerber, S., Kämpfer, U., Lejon, S., Trachsel, C., Human Blood Plasma Proteins Structure and Function, John Wiley & Sons Ltd., West Sussex 2008, pp. 117-118, 122,136.
29. Fyhrquist, F., Saijonmaa, O., Renin-angiotensin system revisited. J. Intern. Med. 2008, 264, 224-236.
30. Villanueva, J., Nazarian, A., Lawlor, K., Yi, S. S. et al., A sequence-specific exopeptidase activity test (SSEAT) for "functional" biomarker discovery. Mol. Cell. Proteomics 2008, 7, 509-518.