Characterising the genetic diversity of Lithuanian sweet cherry (Prunus avium L.) cultivars using SSR markers

Scientia Horticulturae

Volumn 142, Issue , 2012, Pages 136-142

  Stanys, V ^a   Baniulis, D ^a   Morkunaite Haimi, S ^a   Siksnianiene, J B ^a   Frercks, B ^a   Gelvonauskiene, D ^a   Stepulaitiene, I ^a   Staniene, G ^a   Siksnianas, T ^a  

^a INSTITUTE OF AGRICULTURE   (Lithuania)

Author keywords

Cultivar; Genetic diversity; Microsatellite; Prunus avium

Indexed keywords

ALLELE; CULTIVAR; FRUIT; GENETIC MARKER; GENETIC VARIATION; HETEROZYGOSITY; POLYMORPHISM;

CANADA; WESTERN EUROPE;

MEDA; PRUNUS AVIUM;

EID: 84861990808     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.05.011     Document Type: Article

References (32)

1. Botstein D., White R., Skolnick M., Davis R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32:314-331.
2. Clarke J.B., Tobutt K.R. Development and characterization of polymorphic microsatellites from Prunus avium 'Napoleon'. Mol. Ecol. Notes 2003, 6:453-455.
3. Clarke J.B., Tobutt K.R. A standard set of accessions, microsatellites and genotypes for harmonising the fingerprinting of cherry collections for the ECPGR. Horticulture 2009, 814:615-618.
4. Clarke J.B., Sargent D.J., Boskovic R.I., Belaj A., Tobutt K.R. A cherry map from the inter-specific cross Prunus avium 'Napoleon'×P. nipponica based on microsatellite, gene-specific and isoenzyme markers. Tree Genet. Genet. Genomes 2009, 5:41-51.
5. Downey S.L., Iezzoni A.F. Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach, and sour cherry. J. Am. Soc. Hortic. Sci. 2000, 125:76-80.
6. Doyle J.J., Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 1990, 12:13-15.
7. Felsenstein J. PHYLIP phylogeny inference package (version 3.2). Cladistics 1989, 5:164-166.
8. Ganopoulos V.I., Kazantzis K., Chatzicharisis I., Karayiannis I., Tsaftaris S.A. Genetic diversity, structure and fruit trait associations in Greek sweet cherry cultivars using microsatellite based (SSR/ISSR) and morpho-physiological markers. Euphytica 2011, 181:237-251.
9. Guarino C., Santoro S., De Simone L., Cipriani G. Prunus avium: nuclear DNA study in wild populations and sweet cherry cultivars. Genome 2009, 52:320-337.
10. Hall C.A.S., Stanford J.A., Hauer F.R. The distribution and abundance of organisms as a consequence of energy balances along multiple environmental gradients. Oikos 1992, 38:201-221.
11. Hormaza J.I. Molecular characterisation and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theor. Appl. Genet. 2002, 104:321-328.
12. IPGRI, 1985. Cherry Descriptors. Rome International Plant Genetic Resources Institute.
13. Lacis G., Rashal I., Ruisa S., Trajkovski V., Iezzoni A. Assesment of genetic diversity of Latvian and Swedish sweet cherry (Prunus avium L.) genetic resources collections by using SSR (microsatellite) marcers. Sci. Hortic. 2009, 121:451-457.
14. Lacis G., Rashal I., Trajkovski V. Comparative analysis of sweet cherry (P. avium) genetic diversity revealed by two methods of SSR marker detection. Proc. Latv. Acad. Sci. Sect. B: Nat. Exact. Appl. Sci. 2010, 64:149-158.
15. Leimu R., Mutikainen P., Koricheva J., Fischer M. How general are positive relationships between plant population size, fitness and genetic variation?. J. Ecol. 2006, 94:942-952.
16. Lesica P., Allendorf F.W. When are peripheral populations valuable for conservation?. Conserv. Biol. 1995, 9:753-760.
17. Liu K., Muse S.V. PowerMarker: integrated analysis environment for genetic marker data. Bioinformatics 2005, 21:2128-2129.
18. Lukosevicius A. Stone fruit breeding. Plant Breeding, Science and Arts of Lithuania (16) 1998, 202-206. Academia Scientiarum Lithuaniae, Vilnius. A. Liekis (Ed.).
19. Page R. TreeView: an application to display phylogenetic trees on personal computer. Comput. Appl. Biosci. 1996, 12:357-358.
20. Romanovskaja D., Kalvane G., Briede A., Baksiene E. The influence of the climate warming on the changes of the lenghs of phenological seasons of Lithuania and Latvia. Zemdirbyse-Agriculture 2009, 96:218-231.
21. Schueler S., Tusch A., Schuster M., Ziegenhagen B. Characterization of microsatellites in wild and sweet cherry (Prunus avium L.) - markers for individual identification and reproductive processes. Genome 2003, 46:95-102.
22. Sosinski B., Gannavarapu M., Hager L.D., Beck L.E., King G.J., Ryder C.D., Rajapakse S., Baird W.V., Ballard R.E., Abbott A.G. Characterization of microsatellite markers in peach (Prunus persica (L.) Batsch). Theor. Appl. Genet. 2000, 101:421-428.
23. Stanys V. Application of in vitro technique as the way to increase the output of cherry seedlings. Horticulture 1998, 468:203-208.
24. Stanys V., Stanyte R., Staniene G., Vinskiene J. S-allele identification by PCR analysis in Lithuanian sweet cherries. Biologija 2008, 54:22-26.
25. Struss D., Ahmad R., Southwick S.M., Boritzk M. Analysis of sweet cherry (Prunus avium L.) cultivars using SSR and AFLP markers. J. Am. Soc. Hortic. Sci. 2003, 128:904-909.
26. Testolin R., Marrazo M.T., Cipriani G., Quarta R., Verde I., Dettori M.T. Microsatellite DNA in peach (Prunus persica (L.) Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 2000, 43:512-520.
27. UPOV Guidenes for the conduct of test for distinctness, homogenity and stability of the cherry. International Union for the Protection of New Varieties of Plants 1976, 15.
28. Van OOsterhout C., Hutchinson W.F., Derek P.M.Wills, Shipley P. Micro-checker:software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 2004, 4:535-538.
29. Vaughan S.P., Russell K. Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunus avium. Mol. Ecol. Notes 2004, 4:429-431.
30. Webster A.D. The taxonomic classification of sweet and sour cherries and a brief history of their cultivation. Cherries: Crop Physiology, Production and Uses 1996, 3-23. Cab International, Wallingford. A.D. Webster, N.E. Looney (Eds.).
31. Wünsch A., Hormaza J.I. Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach (Prunus persica (L.) Batsch) SSR sequences. Heredity 2002, 89:56-63.
32. Wünsch A., Hormaza J.I. Molecular evaluation of genetic diversity and S-allele composition of local Spanish sweet cherry (Prunus avium L.) cultivars. Genet. Resour. Crop Evol. 2004, 51:635-641.