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Volumn , Issue , 2012, Pages 202-207

Efficient path kernels for reaction function prediction

Author keywords

Compressed data structures; Graph kernels; Hierarchical classification; Reaction graph; XBW transform

Indexed keywords

BURROWS WHEELER TRANSFORM; COMPUTATIONAL COSTS; EFFICIENT PATH; FAST COMPUTATION; GRAPH KERNELS; HIERARCHICAL CLASSIFICATION; PATH INDEX; PATH-BASED; PREDICTION ACCURACY; PREDICTIVE PERFORMANCE; REACTION FUNCTIONS; REACTION GRAPH; SIMILARITY MEASURE; STRUCTURED DATA; SUBGRAPHS;

EID: 84861969594     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (7)

References (16)
  • 4
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    • Optimal artificial chemistries and metabolic pathways
    • IEEE Computer Science Press
    • Felix, H., Rossello, F., and Valiente, G. (2005). Optimal artificial chemistries and metabolic pathways. In Proc. 6th Mexican Int. Conf. Computer Science, pages 298-305. IEEE Computer Science Press.
    • (2005) Proc. 6th Mexican Int. Conf. Computer Science , pp. 298-305
    • Felix, H.1    Rossello, F.2    Valiente, G.3
  • 5
    • 71449088969 scopus 로고    scopus 로고
    • Compressing and indexing labeled trees, with applications
    • Ferragina, P., Luccio, F., Manzini, G., and Muthukrishnan, S. (2009). Compressing and indexing labeled trees, with applications. J. ACM, 57:4:1-4:33.
    • (2009) J. ACM , vol.57 , pp. 41-433
    • Ferragina, P.1    Luccio, F.2    Manzini, G.3    Muthukrishnan, S.4
  • 8
    • 1842539452 scopus 로고    scopus 로고
    • When indexing equals compression: Experiments with compressing suffix arrays and applications
    • Philadelphia, PA, USA. SIAM
    • Grossi, R., Gupta, A., and Vitter, J. S. (2004). When indexing equals compression: experiments with compressing suffix arrays and applications. In Proc. 15th annual ACM-SIAM Symposium on Discrete Algorithms, pages 636-645, Philadelphia, PA, USA. SIAM.
    • (2004) Proc. 15th Annual ACM-SIAM Symposium on Discrete Algorithms , pp. 636-645
    • Grossi, R.1    Gupta, A.2    Vitter, J.S.3
  • 9
    • 78651301358 scopus 로고    scopus 로고
    • Computing atom mappings for biochemical reactions without subgraph isomorphism
    • Heinonen, M., Lappalainen, S., Mielikäinen, T., and Rousu, J. (2011). Computing atom mappings for biochemical reactions without subgraph isomorphism. J. Comp. Biology, 18:43-58.
    • (2011) J. Comp. Biology , vol.18 , pp. 43-58
    • Heinonen, M.1    Lappalainen, S.2    Mielikäinen, T.3    Rousu, J.4
  • 12
    • 23844458045 scopus 로고    scopus 로고
    • Graph kernels for molecular structure-activity relationship analysis with support vector machines
    • Mahe, P., Ueda, N., Akutsu, T., Perret, J.-L., and Vert, J.-P. (2005). Graph kernels for molecular structure-activity relationship analysis with support vector machines. J. Chem. Inf. Model., 45:939-951.
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 939-951
    • Mahe, P.1    Ueda, N.2    Akutsu, T.3    Perret, J.-L.4    Vert, J.-P.5
  • 15
    • 75149133815 scopus 로고    scopus 로고
    • Reaction graph kernels predict ec numbers of unknown enzymatic reactions in plant secondary metabolism
    • Saigo, H., Hattori, M., Kashima, H., and Tsuda, K. (2010). Reaction graph kernels predict ec numbers of unknown enzymatic reactions in plant secondary metabolism. BMC Bioinformatics, 11:S31.
    • (2010) BMC Bioinformatics , vol.11
    • Saigo, H.1    Hattori, M.2    Kashima, H.3    Tsuda, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.