Phylogeny and evolutionary genetics of porcine parvovirus in wild boars

Infection, Genetics and Evolution

Volumn 12, Issue 6, 2012, Pages 1163-1171

  Cadar, Dániel ^a   Dán, Ádám ^b   Tombácz, Kata ^c   Lorincz, Márta ^c   Kiss, Timea ^a   Becskei, Zsolt ^d   Spînu, Marina ^a   Tuboly, Tamás ^c   Cságola, Attila ^c  

^a UNIVERSITY OF AGRICULTURAL SCIENCES AND VETERINARY MEDICINE   (Romania)

^b CENTRAL VETERINARY INSTITUTE   (Hungary)

^c SZENT ISTVÁN UNIVERSITY   (Hungary)

^d UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

Evolution; Genetic diversity; Phylogeny; PPV; Wild boar

Indexed keywords

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DOMESTIC PIG; GENE CLUSTER; GENETIC ASSOCIATION; GENETIC VARIABILITY; MOLECULAR CLOCK; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PORCINE PARVOVIRUS; PRIORITY JOURNAL; ROMANIA; SEQUENCE ANALYSIS; SUBSTITUTION LINE; VIRAL GENETICS; VIRUS DETECTION; VIRUS GENE; VIRUS VIRULENCE; VP1 GENE; VP2 GENE; WILD BOAR;

ANIMALS; ANTIGENS, VIRAL; CAPSID PROTEINS; DNA MUTATIONAL ANALYSIS; DNA, VIRAL; EVOLUTION, MOLECULAR; KIDNEY; LIVER; LUNG; LYMPHOID TISSUE; PARVOVIRUS, PORCINE; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; SUS SCROFA;

PORCINE PARVOVIRUS; SUIDAE; SUS SCROFA; SUS SCROFA DOMESTICA;

EID: 84861924754     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.04.020     Document Type: Article

References (65)

1. Allan G.M., Kennedy S., McNeilly F., Foster J.C., Ellis J.A., Krakowka S.J., Meehan B.M., Adair B.M. Experimental reproduction of severe wasting disease by co-infection of pigs with porcine circovirus and porcine parvovirus. J. Comp. Pathol. 1999, 121:1-11.
2. Arenas M., Posada D. Coalescent simulation of intracodon recombination. Genetics 2010, 184:429-437.
3. Battilani M., Balboni A., Ustulin M., Giunti M., Scagliarini A., Prosperi S. Genetic complexity and multiple infections with more Parvovirus species in naturally infected cats. Vet. Res. 2011, 2(1):42-43.
4. Bergeron J., Menezes J., Tijssen P. Genome organization and mapping of transcription and translation products of the NADL-2 strain of porcine parvovirus. Virology 1993, 197:86-98.
5. Bergeron J., Hebert B., Tijssen P. Genome organization of the Kresse strain of porcine parvovirus: identification of the allotropic determinant and comparison with those of NADL-2 and field isolates. J. Virol. 1996, 70:2508-2515.
6. Bolt D.M., Häni H., Müller E., Waldvogel A.S. Non-suppurative myocarditis in piglets associated with porcine parvovirus infection. J. Comp. Pathol. 1997, 117:107-118.
7. Brown T.T., Paul P.S., Mengeling W.L. Response of conventionally raised weanling pigs to experimental infection with a virulent strain of porcine parvovirus. Am. J. Vet. Res. 1980, 41:1221-1224.
8. Cadar D., Cságola A., Spinu M., Dán A., Ursu K., Lorincz M., Tuboly T. Prevalence of porcine circoviruses in Transylvanian wild boars, detected by real-time PCR. Acta Vet. Hung. 2010, 58:475-481.
9. Cadar D., Cságola A., Lo{doubleacute}rincz M., Tombácz K., Kiss T., Spînu M., Tuboly T. Genetic detection and analysis of porcine bocavirus type 1 (PoBoV1) in European wild boar (Sus scrofa). Virus Genes 2011, 43:376-379.
10. Chapman M.S., Rossmann M.G. Structure, sequence, and function correlations among parvoviruses. Virology 1993, 194:491-508.
11. Choi C.S., Molitor T.W., Joo H.S., Gunther R. Pathogenicity of a skin isolate of porcine parvovirus in swine fetuses. Vet. Microbiol. 1987, 15:19-29.
12. Decaro N., Desario C., Miccolupo A., Campolo M., Parisi A., Martella V., Amorisco F., Lucente M.S., Lavazza A., Buonavoglia C. Genetic analysis of feline panleukopenia viruses from cats with gastroenteritis. J. Gen. Virol. 2008, 89:2290-2298.
13. Drolet R., D'Allaire S., Larochelle R., Magar R., Ribotta M., Higgins R. Infectious agents identified in pigs with multifocal interstitial nephritis at slaughter. Vet. Rec. 2002, 150:139-143.
14. Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 2005, 22:1185-1192.
15. Drummond A.J., Ho S.Y.W., Phillips M.J., Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4:e88.
16. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
17. Firth C., Charleston M.A., Duffy S., Shapiro B., Holmes E.C. Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2. J. Virol. 2009, 83:12813-12821.
18. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
19. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
20. Hao X., Lu Z., Sun P., Fu Y., Cao Y., Li P., Bai X., Bao H., Xie B., Chen Y., Li D., Liu Z. Phylogenetic analysis of porcine parvoviruses from swine samples in China. Virol. J. 2011, 8:320.
21. Jóźwik A., Manteufel J., Selbitz H.J., Truyen U. Vaccination against porcine parvovirus protects against disease, but does not prevent infection and virus shedding after challenge infection with a heterologous virus strain. J. Gen. Virol. 2009, 90:2437-2441.
22. Kamstrup S., Langeveld J., Bøtner A., Nielsen J., Schaaper W.M., Boshuizen R.S., Casal J.I., Højrup P., Vela C., Meloen R., Dalsgaard K. Mapping the antigenic structure of porcine parvovirus at the level of peptides. Virus Res. 1998, 53:163-173.
23. Korber B. HIV Signature and Sequence Variation Analysis. Computational Analysis of HIV Molecular Sequences 2000, 55-72. Kluwer Academic Publisher, Drodrecht, The Netherlands. A.G. Rodrigo, G.H. Learn (Eds.).
24. Krakowka S., Ellis J.A., Meehan B., Kennedy S., McNeilly F., Allan G. Viral wasting syndrome of swine: experimental reproduction of postweaning multisystemic wasting syndrome in gnotobiotic swine by co infection with porcine circovirus 2 and porcine parvovirus. Vet. Pathol. 2000, 37:254-263.
25. Kresse J.I., Taylor W.D., Stewart W.W., Eernisse K.A. Parvovirus infection in pigs with necrotic and vesicle-like lesions. Vet. Microbiol. 1985, 10:525-531.
26. Lager K.M., Mengeling W.L. Porcine parvovirus associated with cutaneous lesions in piglets. J. Vet. Diagn. Invest. 1994, 6:357-359.
27. Lester J., Heidy D., Maria I., Patricia D., Maria T. First report of porcine circovirus type 2 infections in Cuba. Res. Vet. Sci. 2010, 3:528-530.
28. Martin D.P., Lemey P., Lott M., Moulton V., Posada D., Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 2010, 26:2462-2463.
29. Mengeling W.L., Cutlip R.C. Pathogenesis of in utero infection: experimental infection of five-week-old porcine fetuses with porcine parvovirus. Am. J. Vet. Res. 1975, 36:1173-1177.
30. Mengeling W.L., Pejsak Z., Paul P.S. Biological assay of attenuated strain NADL-2 and virulent strain NADL-8 of porcine parvovirus. Am. J. Vet. Res. 1984, 45:2403-2407.
31. Mengeling W.L., Ridpath J.F., Vorwald A.C. Size and antigenic comparisons among the structural proteins of selected autonomous parvoviruses. J. Gen. Virol. 1988, 69:825-837.
32. Mengeling W.L., Lager K.M., Zimmerman J.K., Samarikermani N., Beran G.W. A current assessment of the role of porcine parvovirus as a cause of fetal porcine death. J. Vet. Diagn. Invest. 1991, 3:33-35.
33. Mengeling W.L., Lager K.M., Vorwald A.C. The effect of porcine parvovirus and porcine reproductive and respiratory syndrome virus on porcine reproductive performance. Anim. Reprod. Sci. 2000, 60-61:199-210.
34. Mengeling W.L. Porcine parvovirus. Diseases of Swine 2006, Blackwell Publishing, Ames, IA. ninth ed. B.E. Straw, J.J. Zimmerman, S. D'Allaire, D.J. Taylor (Eds.).
35. Mohan Raj J., Mukhopadhyay H.K., Thanislass J., Antony P.X., Pillai R.M. Isolation, molecular characterization and phylogenetic analysis of canine parvovirus. Infect. Genet. Evol. 2010, 10:1237-1241.
36. Molitor T.W., Joo H.S., Collett M.S. Porcine parvovirus: virus purification and structural and antigenic properties of virion polypeptides. J. Virol. 1983, 45:842-854.
37. Montagnaro S., Sasso S., De Martino L., Longo M., Iovane V., Ghiurmino G., Pisanelli G., Nava D., Baldi L., Pagnini U. Prevalence of antibodies to selected viral and bacterial pathogens in wild boar (Sus scrofa) in Campania Region. Italy. J. Wildl. Dis. 2010, 46:316-319.
38. Olvera A., Cortey M., Segalés J. Molecular evolution of porcine circovirus type 2 genomes: phylogeny and clonality. Virology 2007, 357:175-185.
39. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
40. Qing L., Lv J., Li H., Tan Y., Hao H., Chen Z., Zhao J., Chen H. The recombinant nonstructural polyprotein NS1 of porcine parvovirus (PPV) as diagnostic antigen in ELISA to differentiate infected from vaccinated pigs. Vet. Res. Commun. 2006, 30:175-190.
41. Ranz A.I., Manclus J.J., Diaz-Aroca E., Casal J.I. Porcine parvovirus: DNA sequence and genome organization. J. Gen. Virol. 1989, 70:2541-2553.
42. Roić B., Cajavec S., Toncić J., Madić J., Lipej Z., Jemersić L., Lojkić M., Mihaljević Z., Cac Z., Sostarić B. Prevalence of antibodies to porcine parvovirus in wild boars (Sus scrofa) in Croatia. J. Wildl. Dis. 2005, 41:796-799.
43. Ruiz-Fons F., Vicente J., Vidal D., Höfle U., Villanúa D., Gauss C., Segalés J., Almería S., Montoro V., Gortázar C. Seroprevalence of six reproductive pathogens in European wild boar (Sus scrofa) from Spain: the effect on wild boar female reproductive performance. Theriogenology 2006, 65:731-743.
44. Schierup M.H., Hein J. Consequences of recombination on traditional phylogenetic analysis. Genetics 2000, 156:879.
45. Segalés J., Allan G.M., Domingo M. Porcine circovirus diseases. Anim. Health Res. Rev. 2005, 6:119-142.
46. Shackelton L.A., Parrish C.R., Truyen U., Holmes E.C. High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc. Natl. Acad. Sci. USA 2005, 102:379-384.
47. Shackelton L.A., Hoelzer K., Parrish C.R., Holmes E.C. Comparative analysis reveals frequent recombination in the parvoviruses. J. Gen. Virol. 2007, 88:3294-3301.
48. Shangjin C., Cortey M., Segalés J. Phylogeny and evolution of the NS1 and VP1/VP2 gene sequences from porcine parvovirus. Virus Res. 2009, 140:209-215.
49. Simpson A.A., Hébert B., Sullivan G.M., Parrish C.R., Zádori Z., Tijssen P., Rossmann M.G. The structure of porcine parvovirus: comparison with related viruses. J. Mol. Biol. 2002, 315:1189-1198.
50. Soares M.R., Cortez A., Heinemann M.B., Sakamoto S.M., Martins V.G., Bacci M., De Campos Fernandes F.M., Richtzenhain L.J. Genetic variability of porcine parvovirus isolates revealed by analysis of partial sequences of the structural coding gene VP2. J. Gen. Virol. 2003, 84:1505-1515.
51. Soares R.M., Durigon E.L., Bersano J.G., Richtzenhain L.J. Detection of porcine parvovirus DNA by the polymerase chain reaction assay using primers to the highly conserved nonstructural protein gene, NS-1. J. Virol. Methods 1999, 78:191-198.
52. Stamatakis A. RAxML-VI-HPC Maximum Likelihood-based Phylogenetic Analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
53. Strassheim M.L., Gruenberg A., Veijalainen P., Sgro J.Y., Parrish C.R. Two dominant neutralizing antigen determinants of canine parvovirus are found on the threefold spike of the virus capsid. Virology 1994, 198:175-184.
54. Streck A.F., Bonatto S.L., Homeier T., Souza C.K., Gonçalves K.R., Gava D., Canal C.W., Truyen U. High rate of viral evolution in the capsid protein of porcine parvovirus. J. Gen. Virol. 2011, 92:2628-2636.
55. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
56. Tattersall P. The evolution of parvovirus taxonomy. Parvoviruses 2006, 5-14. Hodder Arnold, London, United Kingdom. J.R. Kerr, S.F. Cotmore, M.E. Bloom, M.R. Linden, C.R. Parrish (Eds.).
57. Tijssen P., Bergeron J., Dubuc R., Hébert B. Minor genetic changes among porcine parvovirus groups are responsible for major distinguishing biological properties. Semin. Virol. 1995, 6:319-328.
58. Vasudevacharya J., Basak S., Srinivas R.V., Compans R.W. Nucleotide sequence analysis of the capsid genes and the right-hand terminal palindrome of porcine parvovirus, strain NADL-2. Virology 1989, 173:368-377.
59. Vengust G., Valencak Z., Bidovec A. A serological survey of selected pathogens in wild boar in Slovenia. J. Vet. Med. B Infect. Dis. Vet. Public Health 2006, 53:24-27.
60. Vicente J., León-Vizcaíno L., Gortázar C., José Cubero M., González M., Martín-Atance P. Antibodies to selected viral and bacterial pathogens in European wild boars from southcentral Spain. J. Wildl. Dis. 2002, 38:649-652.
61. Whitaker H.K., Neu S.M., Pace L.W. Parvovirus infection in pigs with exudative skin disease. J. Vet. Diagn. Invest. 1990, 2:244-246.
62. Yang Z. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
63. Zádori Z., Szelei J., Tijssen P. SAT: a late NS protein of porcine parvovirus. J. Virol. 2005, 79:13129-13138.
64. Zeeuw E.J., Leinecker N., Herwig V., Selbitz H.J., Truyen U. Study of the virulence and cross-neutralization capability of recent porcine parvovirus field isolates and vaccine viruses in experimentally infected pregnant gilts. J. Gen. Virol. 2007, 88:420-427.
65. Zimmermann P., Ritzmann M., Selbitz H.J., Heinritzi K., Truyen U. VP1 sequences of German porcine parvovirus isolates define two genetic lineages. J. Gen. Virol. 2006, 87:295-301.