-
1
-
-
33746467893
-
Mitochondrial genome dynamics in plants and animals: Convergent gene fusions of a MutS homologue
-
Abdelnoor RV, Christensen AC, Mohammed S, Munoz-Castillo B, Moriyama H, Mackenzie SA (2006) Mitochondrial genome dynamics in plants and animals: convergent gene fusions of a MutS homologue. J Mol Evol 63: 165-173
-
(2006)
J Mol Evol
, vol.63
, pp. 165-173
-
-
Abdelnoor, R.V.1
Christensen, A.C.2
Mohammed, S.3
Munoz-Castillo, B.4
Moriyama, H.5
McKenzie, S.A.6
-
2
-
-
0038612979
-
Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS
-
Abdelnoor RV, Yule R, Elo A, Christensen AC, Meyer-Gauen G, Mackenzie SA (2003) Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS. Proc Natl Acad Sci USA 100: 5968-5973
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5968-5973
-
-
Abdelnoor, R.V.1
Yule, R.2
Elo, A.3
Christensen, A.C.4
Meyer-Gauen, G.5
McKenzie, S.A.6
-
3
-
-
71549141989
-
Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity
-
Arrieta-Montiel MP, Shedge V, Davila J, Christensen AC, Mackenzie SA (2009) Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity. Genetics 183: 1261-1268
-
(2009)
Genetics
, vol.183
, pp. 1261-1268
-
-
Arrieta-Montiel, M.P.1
Shedge, V.2
Davila, J.3
Christensen, A.C.4
McKenzie, S.A.5
-
4
-
-
78549289532
-
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana
-
Bergelson J, Roux F (2010) Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet 11: 867-879
-
(2010)
Nat Rev Genet
, vol.11
, pp. 867-879
-
-
Bergelson, J.1
Roux, F.2
-
5
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
6
-
-
77949800114
-
Nongenetic inheritance and its evolutionary implications
-
Bonduriansky R, Day T (2009) Nongenetic inheritance and its evolutionary implications. Annu Rev Ecol Evol Syst 40: 103-125
-
(2009)
Annu Rev Ecol Evol Syst
, vol.40
, pp. 103-125
-
-
Bonduriansky, R.1
Day, T.2
-
7
-
-
17044425931
-
The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist-chilling and germination
-
Chiwocha SD, Cutler AJ, Abrams SR, Ambrose SJ, Yang J, Ross AR, Kermode AR (2005) The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist-chilling and germination. Plant J 42: 35-48
-
(2005)
Plant J
, vol.42
, pp. 35-48
-
-
Chiwocha, S.D.1
Cutler, A.J.2
Abrams, S.R.3
Ambrose, S.J.4
Yang, J.5
Ross, A.R.6
Kermode, A.R.7
-
8
-
-
79959439333
-
Beyond DNA: Integrating inclusive inheritance into an extended theory of evolution
-
Danchin É, Charmantier A, Champagne FA, Mesoudi A, Pujol B, Blanchet S (2011) Beyond DNA: integrating inclusive inheritance into an extended theory of evolution. Nat Rev Genet 12: 475-486
-
(2011)
Nat Rev Genet
, vol.12
, pp. 475-486
-
-
Danchin, E.1
Charmantier, A.2
Champagne, F.A.3
Mesoudi, A.4
Pujol, B.5
Blanchet, S.6
-
9
-
-
80053199003
-
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis
-
Davila JI, Arrieta-Montiel MP, Wamboldt Y, Cao J, Hagmann J, Shedge V, Xu YZ, Weigel D, Mackenzie SA (2011) Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. BMC Biol 9: 64
-
(2011)
BMC Biol
, vol.9
, pp. 64
-
-
Davila, J.I.1
Arrieta-Montiel, M.P.2
Wamboldt, Y.3
Cao, J.4
Hagmann, J.5
Shedge, V.6
Xu, Y.Z.7
Weigel, D.8
McKenzie, S.A.9
-
10
-
-
65649145495
-
Completing the cycle: Maternal effects as the missing link in plant life histories
-
Donohue K (2009) Completing the cycle: maternal effects as the missing link in plant life histories. Philos Trans R Soc Lond B Biol Sci 364: 1059-1074
-
(2009)
Philos Trans R Soc Lond B Biol Sci
, vol.364
, pp. 1059-1074
-
-
Donohue, K.1
-
11
-
-
77951903570
-
SnapShot: Control of flowering in Arabidopsis
-
Fornara F, de Montaigu A, Coupland G (2010) SnapShot: control of flowering in Arabidopsis. Cell 141:550, e1-e2
-
(2010)
Cell
, vol.141
-
-
Fornara, F.1
de Montaigu, A.2
Coupland, G.3
-
12
-
-
15944414754
-
Maternal effects provide phenotypic adaptation to local environmental conditions
-
Galloway LF (2005) Maternal effects provide phenotypic adaptation to local environmental conditions. New Phytol 166: 93-99
-
(2005)
New Phytol
, vol.166
, pp. 93-99
-
-
Galloway, L.F.1
-
13
-
-
36249013646
-
Transgenerational plasticity is adaptive in the wild
-
Galloway LF, Etterson JR (2007) Transgenerational plasticity is adaptive in the wild. Science 318: 1134-1136
-
(2007)
Science
, vol.318
, pp. 1134-1136
-
-
Galloway, L.F.1
Etterson, J.R.2
-
14
-
-
77749274455
-
Polyamines and abiotic stress tolerance in plants
-
Gill SS, Tuteja N (2010) Polyamines and abiotic stress tolerance in plants. Plant Signal Behav 5: 26-33
-
(2010)
Plant Signal Behav
, vol.5
, pp. 26-33
-
-
Gill, S.S.1
Tuteja, N.2
-
15
-
-
58749109023
-
Genevestigator v3: A reference expression database for the meta-analysis of transcriptomes
-
Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P (2008) Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics 2008: 420747
-
(2008)
Adv Bioinformatics
, vol.2008
, pp. 420747
-
-
Hruz, T.1
Laule, O.2
Szabo, G.3
Wessendorp, F.4
Bleuler, S.5
Oertle, L.6
Widmayer, P.7
Gruissem, W.8
Zimmermann, P.9
-
17
-
-
54149109197
-
Epigenome dynamics: A quantitative genetics perspective
-
Johannes F, Colot V, Jansen RC (2008) Epigenome dynamics: a quantitative genetics perspective. Nat Rev Genet 9: 883-890
-
(2008)
Nat Rev Genet
, vol.9
, pp. 883-890
-
-
Johannes, F.1
Colot, V.2
Jansen, R.C.3
-
18
-
-
0000864111
-
Registration of RTx430 sorghum parental line
-
Miller FR (1984) Registration of RTx430 sorghum parental line. Crop Sci 24: 1224
-
(1984)
Crop Sci
, vol.24
, pp. 1224
-
-
Miller, F.R.1
-
19
-
-
19944399492
-
CND41, a chloroplast nucleoid protein that regulates plastid development, causes reduced gibberellin content and dwarfism in tobacco
-
Nakano T, Nagata N, Kimuro T, Sekimoto M, Kawaide H, Murakami S, Kaneko Y, Matsuchima H, Kamiya Y, Sato F, et al (2003) CND41, a chloroplast nucleoid protein that regulates plastid development, causes reduced gibberellin content and dwarfism in tobacco. Physiol Plant 117: 130-136
-
(2003)
Physiol Plant
, vol.117
, pp. 130-136
-
-
Nakano, T.1
Nagata, N.2
Kimuro, T.3
Sekimoto, M.4
Kawaide, H.5
Murakami, S.6
Kaneko, Y.7
Matsuchima, H.8
Kamiya, Y.9
Sato, F.10
-
20
-
-
79959607309
-
Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment
-
Ogata H, Ray J, Toyoda K, Sandaa RA, Nagasaki K, Bratbak G, Claverie JM (2011) Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment. ISME J 5: 1143-1151
-
(2011)
ISME J
, vol.5
, pp. 1143-1151
-
-
Ogata, H.1
Ray, J.2
Toyoda, K.3
Sandaa, R.A.4
Nagasaki, K.5
Bratbak, G.6
Claverie, J.M.7
-
21
-
-
79957775200
-
A sister group contrast using untargeted global metabolomic analysis delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus
-
Oliver MJ, Guo L, Alexander DC, Ryals JA, Wone BW, Cushman JC (2011) A sister group contrast using untargeted global metabolomic analysis delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus. Plant Cell 23: 1231-1248
-
(2011)
Plant Cell
, vol.23
, pp. 1231-1248
-
-
Oliver, M.J.1
Guo, L.2
Alexander, D.C.3
Ryals, J.A.4
Wone, B.W.5
Cushman, J.C.6
-
22
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
23
-
-
0037302244
-
Leaf-variegated mutations and their responsible genes in Arabidopsis thaliana
-
Sakamoto W (2003) Leaf-variegated mutations and their responsible genes in Arabidopsis thaliana. Genes Genet Syst 78: 1-9
-
(2003)
Genes Genet Syst
, vol.78
, pp. 1-9
-
-
Sakamoto, W.1
-
24
-
-
33846931046
-
Transgenic induction of mitochondrial rearrangements for cytoplasmic male sterility in crop plants
-
Sandhu AP, Abdelnoor RV, Mackenzie SA (2007) Transgenic induction of mitochondrial rearrangements for cytoplasmic male sterility in crop plants. Proc Natl Acad Sci USA 104: 1766-1770
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1766-1770
-
-
Sandhu, A.P.1
Abdelnoor, R.V.2
McKenzie, S.A.3
-
25
-
-
11844277123
-
The HSP90 chaperone complex, an emerging force in plant development and phenotypic plasticity
-
Sangster TA, Queitsch C (2005) The HSP90 chaperone complex, an emerging force in plant development and phenotypic plasticity. Curr Opin Plant Biol 8: 86-92
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 86-92
-
-
Sangster, T.A.1
Queitsch, C.2
-
26
-
-
34250657287
-
Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs
-
Shedge V, Arrieta-Montiel M, Christensen AC, Mackenzie SA (2007) Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs. Plant Cell 19: 1251-1264
-
(2007)
Plant Cell
, vol.19
, pp. 1251-1264
-
-
Shedge, V.1
Arrieta-Montiel, M.2
Christensen, A.C.3
McKenzie, S.A.4
-
27
-
-
77950533883
-
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance
-
Shedge V, Davila J, Arrieta-Montiel M, Mohammed S, Mackenzie SA (2010) Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance. Plant Physiol 152: 1960-1970
-
(2010)
Plant Physiol
, vol.152
, pp. 1960-1970
-
-
Shedge, V.1
Davila, J.2
Arrieta-Montiel, M.3
Mohammed, S.4
McKenzie, S.A.5
-
28
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
29
-
-
79960849576
-
Gibberellin regulates PIN-FORMED abundance and is required for auxin transport-dependent growth and development in Arabidopsis thaliana
-
Willige BC, Isono E, Richter R, Zourelidou M, Schwechheimer C (2011) Gibberellin regulates PIN-FORMED abundance and is required for auxin transport-dependent growth and development in Arabidopsis thaliana. Plant Cell 23: 2184-2195
-
(2011)
Plant Cell
, vol.23
, pp. 2184-2195
-
-
Willige, B.C.1
Isono, E.2
Richter, R.3
Zourelidou, M.4
Schwechheimer, C.5
-
30
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol 8: 625-637
-
(2001)
J Comput Biol
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
31
-
-
80054969644
-
MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light
-
Xu YZ, Arrieta-Montiel MP, Virdi KS, de Paula WB, Widhalm JR, Basset GJ, Davila JI, Elthon TE, Elowsky CG, Sato SJ, et al (2011) MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light. Plant Cell 23: 3428-3441
-
(2011)
Plant Cell
, vol.23
, pp. 3428-3441
-
-
Xu, Y.Z.1
Arrieta-Montiel, M.P.2
Virdi, K.S.3
de Paula, W.B.4
Widhalm, J.R.5
Basset, G.J.6
Davila, J.I.7
Elthon, T.E.8
Elowsky, C.G.9
Sato, S.J.10
-
32
-
-
33846596649
-
Variegation mutants and mechanisms of chloroplast biogenesis
-
Yu F, Fu A, Aluru M, Park S, Xu Y, Liu H, Liu X, Foudree A, Nambogga M, Rodermel S (2007) Variegation mutants and mechanisms of chloroplast biogenesis. Plant Cell Environ 30: 350-365
-
(2007)
Plant Cell Environ
, vol.30
, pp. 350-365
-
-
Yu, F.1
Fu, A.2
Aluru, M.3
Park, S.4
Xu, Y.5
Liu, H.6
Liu, X.7
Foudree, A.8
Nambogga, M.9
Rodermel, S.10
|