Interaction of GAPR-1 with lipid bilayers is regulated by alternative homodimerization

Biochimica et Biophysica Acta - Biomembranes

Volumn 1818, Issue 9, 2012, Pages 2175-2183

  Van Galen, Josse ^a,c   Olrichs, Nick K ^a   Schouten, Arie ^b   Serrano, Ramon L ^a,d   Nolte 't Hoen, Esther N M ^a   Eerland, Ruud ^a   Kaloyanova, Dora ^a   Gros, Piet ^b   Helms, J Bernd ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UTRECHT UNIVERSITY   (Netherlands)

^c CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Crystal structure; Dimerization; GAPR 1; GLIPR 2; Phytic acid; Protein lipid interaction

Indexed keywords

GOLGI ASSOCIATED PLANT PATHOGENESIS RELATED PROTEIN 1; MEMBRANE PROTEIN; PHOSPHATIDYLINOSITOL; PHYTIC ACID; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DIMERIZATION; FLOW CYTOMETRY; GEL FILTRATION CHROMATOGRAPHY; LIGHT SCATTERING; LIPID BILAYER; NONHUMAN; OLIGOMERIZATION; PLASMID; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN LIPID INTERACTION; PROTEIN LOCALIZATION; PROTEIN PURIFICATION; PROTEIN STRUCTURE;

CELL MEMBRANE; CHROMATOGRAPHY, GEL; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; FLOW CYTOMETRY; GOLGI APPARATUS; HUMANS; LIPID BILAYERS; LIPIDS; LIPOSOMES; MEMBRANE PROTEINS; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MUTATION; PHOSPHATIDYLINOSITOLS; PHYTIC ACID; PLASMIDS; PROTEIN CONFORMATION;

MAMMALIA;

EID: 84861830180     PISSN: 00052736     EISSN: 18792642     Source Type: Journal    
DOI: 10.1016/j.bbamem.2012.04.016     Document Type: Article

References (31)

1. L.C. van Loon, E.A. van Strien, The families of plant pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins, Physiol. Mol. Plant Pathol. 55 (1999) 85-97.
2. L.C. van Loon, M. Rep, C.M. Pieterse, Significance of inducible defense-related proteins in infected plants, Annu. Rev. Phytopathol. 44 (2006) 135-162. (Pubitemid 44435701)
3. R.L. Serrano, A. Kuhn, A.Hendricks, J.B. Helms, I. Sinning, M.R. Groves, Structural analysis of the human Golgi-associated plant pathogenesis related protein GAPR-1 implicates dimerization as a regulatory mechanism, J. Mol. Biol. 339 (2004) 173-183. (Pubitemid 38578419)
4. H.B. Eberle, R.L. Serrano, J. Fullekrug, A. Schlosser, W.D. Lehmann, F. Lottspeich, D. Kaloyanova, F.T. Wieland, J.B. Helms, Identification and characterization of a novel human plant pathogenesis-related protein that localizes to lipid-enriched microdomains in the Golgi complex, J. Cell Sci. 115 (2002) 827-838. (Pubitemid 34196342)
5. T. Niderman, I. Genetet, T. Bruyere, R. Gees, A. Stintzi, M. Legrand, B. Fritig, E. Mosinger, Pathogenesis-related PR-1 proteins are antifungal. Isolation and characterization of three 14-kilodalton proteins of tomato and of a basic PR-1 of tobacco with inhibitory activity against Phytophthora infestans, Plant Physiol. 108 (1995) 17-27.
6. T.J. Milne, G. Abbenante, J.D. Tyndall, J. Halliday, R.J. Lewis, Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily, J. Biol. Chem. 278 (2003) 31105-31110. (Pubitemid 36994625)
7. C. Fernandez, T. Szyperski, T. Bruyere, P. Ramage, E.Mosinger, K.Wuthrich, NMR solution structure of the pathogenesis-related protein P14a, J. Mol. Biol. 266 (1997) 576-593. (Pubitemid 27117289)
8. A. Henriksen, T.P. King, O. Mirza, R.I. Monsalve, K. Meno, H. Ipsen, J.N. Larsen, M. Gajhede, M.D. Spangfort, Major venom allergen of yellow jackets, Ves v 5: structural characterization of a pathogenesis-related protein superfamily, Proteins 45 (2001) 438-448. (Pubitemid 33108078)
9. R.M. Peitzsch, S. McLaughlin, Binding of acylated peptides and fatty acids to phospholipid vesicles: pertinence to myristoylated proteins, Biochemistry 32 (1993) 10436-10443. (Pubitemid 23320168)
10. H. Taniguchi, Protein myristoylation in protein-lipid and protein-protein interactions, Biophys. Chem. 82 (1999) 129-137.
11. M.D. Resh, Fatty acylation of proteins: new insights into membrane targeting of myristoylated and palmitoylated proteins, Biochim. Biophys. Acta 1451 (1999) 1-16. (Pubitemid 29364242)
12. J. Van Galen, B.W. Van Balkom, R.L. Serrano, D. Kaloyanova, R. Eerland, E. Stueven, J.B. Helms, Binding of GAPR-1 to negatively charged phospholipid membranes: unusual binding characteristics to phosphatidylinositol, Mol. Membr. Biol. 27 (2010) 81-91.
13. M.R. Macbeth, H.L. Schubert, A.P. Vandemark, A.T. Lingam, C.P. Hill, B.L. Bass, Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing, Science 309 (2005) 1534-1539. (Pubitemid 41266474)
14. J. Reineke, S. Tenzer, M. Rupnik, A. Koschinski, O. Hasselmayer, A. Schrattenholz, H. Schild, C. von Eichel-Streiber, Autocatalytic cleavage of Clostridium difficile toxin B, Nature 446 (2007) 415-419. (Pubitemid 46474600)
15. X. Tan, L.I. Calderon-Villalobos, M. Sharon, C. Zheng, C.V. Robinson, M. Estelle, N. Zheng, Mechanism of auxin perception by the TIR1 ubiquitin ligase, Nature 446 (2007) 640-645. (Pubitemid 46606890)
16. S.A. Datta, Z. Zhao, P.K. Clark, S. Tarasov, J.N. Alexandratos, S.J. Campbell, M. Kvaratskhelia, J. Lebowitz, A. Rein, Interactions between HIV-1 Gag molecules in solution: an inositol phosphate-mediated switch, J. Mol. Biol. 365 (2007) 799-811. (Pubitemid 44960371)
17. S.K. Milano, Y.M. Kim, F.P. Stefano, J.L. Benovic, C. Brenner, Nonvisual arrestin oligomerization and cellular localization are regulated by inositol hexakisphosphate binding, J. Biol. Chem. 281 (2006) 9812-9823. (Pubitemid 43864700)
18. M.R. Groves, A. Kuhn, A. Hendricks, S. Radke, R.L. Serrano, J.B. Helms, I. Sinning, Crystallization of a Golgi-associated PR-1-related protein (GAPR-1) that localizes to lipid-enriched microdomains, Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 730-732. (Pubitemid 41184830)
19. CCP4, The CCP4 suite: programs for protein crystallography, Acta Crystallogr. D Biol. Crystallogr. 50 (1994) 760-763.
20. A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, R.J. Read, Phaser crystallographic software, J. Appl. Crystallogr. 40 (2007) 658-674. (Pubitemid 47080256)
21. P. Emsley, K. Cowtan, Coot: model-building tools for molecular graphics, Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 2126-2132. (Pubitemid 41742764)
22. G. Rouser, A.N. Siakotos, S. Fleischer, Quantitative analysis of phospholipids by thin-layer chromatography and phosphorus analysis of spots, Lipids 1 (1966) 85-86.
23. A.D. Bangham, J. De Gier, G.D. Greville, Osmotic properties and water permeability of phospholipid liquid crystals, Chem. Phys. Lipids 1 (1967) 225-246.
24. F.H. Tsao, Purification and characterization of two rabbit lung Ca2(+)-dependent phospholipid-binding proteins, Biochim. Biophys. Acta 1045 (1990) 29-39. (Pubitemid 20205781)
25. E.N.M. Nolte-'t Hoen, E.J. Van der Vlist, M. Aalberts, H.C.H. Mertens, B.J. Bosch, W. Bartelink, E. Mastrobattista, E.V.B. van Gaal, W. Stoorvogel, G.J.A. Arkesteijn, M.H.M. Wauben, Quantitative and qualitative flow cytometric analysis of nanosized cell-derived membrane vesicles Nanomedicine: NBM (in press).
26. E. Krissinel, K. Henrick, Inference of macromolecular assemblies from crystalline state, J. Mol. Biol. 372 (2007) 774-797. (Pubitemid 47321791)
27. E. Posse, B.F. De Arcuri, R.D. Morero, Lysozyme interactions with phospholipid vesicles: relationships with fusion and release of aqueous content, Biochim. Biophys. Acta 1193 (1994) 101-106. (Pubitemid 24234184)
28. P.J. French, C.M. Bunce, L.R. Stephens, J.M. Lord, F.M. McConnell, G. Brown, J.A. Creba, R.H. Michell, Changes in the levels of inositol lipids and phosphates during the differentiation of HL60 promyelocytic cells towards neutrophils or monocytes, Proc. Biol. Sci. 245 (1991) 193-201.
29. C.M. Bunce, P.J. French, P. Allen, J.C.Mountford, B.Moor, M.F. Greaves, R.H. Michell, G. Brown, Comparison of the levels of inositol metabolites in transformed haemopoietic cells and their normal counterparts, Biochem. J. 289 (1993) 667-673. (Pubitemid 23074947)
30. B.S. Szwergold, R.A. Graham, T.R. Brown, Observation of inositol pentakis- and hexakis-phosphates in mammalian tissues by 31P NMR, Biochem. Biophys. Res. Commun. 149 (1987) 874-881.
31. S. McLaughlin, A. Aderem, Themyristoyl-electrostatic switch: a modulator of reversible protein-membrane interactions, Trends Biochem. Sci. 20 (1995) 272-276.