Sinorhizobium americanum symbiovar mediterranense is a predominant symbiont that nodulates and fixes nitrogen with common bean (Phaseolus vulgaris L.) in a Northern Tunisian field

Systematic and Applied Microbiology

Volumn 35, Issue 4, 2012, Pages 263-269

  Mnasri, Bacem ^a   Saïdi, Sabrine ^a   Chihaoui, Saif Allah ^a   Mhamdi, Ridha ^a  

^a CENTRE DE BIOTECHNOLOGIE DE BORJ CÉDRIA   (Tunisia)

Author keywords

Diversity; Ensifer; Housekeeping genes; Phaseolus vulgaris; Phylogeny; Rhizobium

Indexed keywords

BACTERIAL PROTEIN; PROTEIN ATPD; PROTEIN DNAK; PROTEIN NIFH; PROTEIN NODA; PROTEIN RRS; RECA PROTEIN; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLADISTICS; GENE IDENTIFICATION; GEOGRAPHIC DISTRIBUTION; NITROGEN FIXATION; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHASEOLUS VULGARIS; PHYLOGENY; PLANT GROWTH; PLANT ROOT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RHIZOBIACEAE; RHIZOBIUM GALLICUM; RHIZOBIUM GIARDINII; RHIZOBIUM RADIOBACTER; SEQUENCE ANALYSIS; SINORHIZOBIUM; SINORHIZOBIUM AMERICANUM; SPECIES DIVERSITY; SYMBIONT; UNINDEXED SEQUENCE;

BACTERIAL PROTEINS; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; NITROGEN FIXATION; PHASEOLUS; PHYLOGENY; PLANT ROOT NODULATION; PLANT ROOTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RIBOTYPING; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SINORHIZOBIUM; SYMBIOSIS; TUNISIA;

ACACIA; AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS); ENSIFER; PHASEOLUS VULGARIS; RHIZOBIUM; RHIZOBIUM GALLICUM; RHIZOBIUM GIARDINII; SINORHIZOBIUM AMERICANUM;

EID: 84861706261     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.04.003     Document Type: Article

References (38)

1. Aouani M.E., Mhamdi R., Mars M., Elayeb M., Ghrir R. Potential for inoculation of common bean by effective rhizobia in Tunisian soil. Agronomie 1997, 17:445-454.
2. Aserse A.A., Räsänen L.A., Assefa F., Hailemariam A., Lindström K. Phylogeny and genetic diversity of native rhizobia nodulating common bean (Phaseolus vulgaris L.) in Ethiopia. Syst. Appl. Microbiol. 2012, 35:120-131.
3. Bromfield E.S.P., Barran L.R. Promiscuous nodulation of Phaseolus vulgaris, Macroptilium atropurpureum and Leucaena leucocephala by indigenous Rhizobium meliloti. Can. J. Microbiol. 1990, 36:369-372.
4. Ferreira L., Sanchez-Juanes F., Garcia-Fraile P., et al. MALDI-TOF mass spectrometry is a fast and reliable platform for identification and ecological studies of species from family Rhizobiaceae. PloS One 2011, 6(5):e20223. 10.1371/journal.pone.0020223.
5. Gevers D., Cohan F.M., Lawrence J.G., et al. Re-evaluating prokaryotic species. Nat. Rev. Microbiol. 2005, 3:733-739.
6. Hardarson G. Methods for enhancing symbiotic nitrogen fixation. Plant Soil 1993, 152:1-17.
7. Haukka K., Lindström K., Young J.P.W. Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolated from leguminous trees growing in Africa and Latin America. Appl. Environ. Microbiol. 1998, 64:419-426.
8. Herrera-Cervera J.A., Caballero-Mellado J., Laguerre G., Tichy H.V., Requena N., Amarger N., Martinez-Romero E., Olivares J., Sanjuan J. At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil. FEMS Microbiol. Ecol. 1999, 30:87-97.
9. Islam M.S., Kawasaki H., Muramatsu M., Nakagawa Y., Seki T. Bradyrhizobium iriomotense sp. nov., isolated from a tumor-like root of the legume Entada koshunensis from Iriomote Island in Japan. Biosci. Biotechnol. Biochem. 2008, 72:1416-1429.
10. Laguerre G., Nour S.M., Macheret V., Sanjuan J., Drouin P., Amarger N. Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology 2001, 147:981-993.
11. Martens M., Delaere M., Coopman R., De Vos P., Gillis M., Willems A. Multilocus sequence analysis of Ensifer and related taxa. Int. J. Syst. Evol. Microbiol. 2007, 57:489-503.
12. Martens M., Dawyndt P., Coopman R., Gillis M., De Vos P., Willems A. Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int. J. Syst. Evol. Microbiol. 2008, 58:200-214.
13. Martinez-Romero E. Diversity of Rhizobium-Phaseolus vulgaris symbiosis: overview and perspectives. Plant Soil 2003, 252:11-23.
14. Mhamdi R., Jebara M., Aouani M.E., Ghrir R., Mars M. Genotypic diversity and symbiotic effectiveness of rhizobia isolated from root nodules of Phaseolus vulgaris L. grown in Tunisian soils. Biol. Fertil. Soil. 1999, 28:313-320.
15. Mhamdi R., Laguerre G., Aouani M.E., Mars M., Amarger N. Different species and symbiotic genotypes of field rhizobia can nodulate Phaseolus vulgaris in Tunisian soils. FEMS Microbiol. Ecol. 2002, 41:77-84.
16. Mhamdi R., Mrabet M., Laguerre G., Tiwari R., Aouani M.E. Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains. Can. J. Microbiol. 2005, 51:105-111.
17. Michiels J., Dombrecht B., Vermeiren N., Xi C., Luyten E., Vanderleyden J. Phaseolus vulgaris is a non-selective host for nodulation. FEMS Microbiol. Ecol. 1998, 26:193-205.
18. Mnasri B., Aouani M.E., Mhamdi R. Nodulation and growth of common bean under water deficiency. Soil Biol. Biochem. 2007, 39:1744-1750.
19. 2-fixation with Phaseolus vulgaris constitute a novel biovar (bv. mediterranense) of Sinorhizobium meliloti. Arch. Microbiol. 2007, 187:79-85.
20. Mnasri B., Badri Y., Saidi S., de Lajudie P., Mhamdi R. Symbiotic diversity of Ensifer meliloti strains recovered from various legume species in Tunisia. Syst. Appl. Microbiol. 2009, 32:583-592.
21. Muresu R., Polone E., Sulas L., et al. Coexistence of predominantly non-culturable rhizobia with diverse endophytic bacterial taxa within nodules of wild legumes. FEMS Microbiol. Ecol. 2008, 63:383-400.
22. Panday D., Schumann P., Subrata K. Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.). Int. J. Syst. Evol. Microbiol. 2011, 61:2632-2639.
23. Ribeiro R.A., Barcellos F.G., Thompson F.L., Hungria M. Multilocus sequence analysis of Brazilian Rhizobium microsymbionts of common bean (Phaseolus vulgaris L.) reveals unexpected taxonomic diversity. Res. Microbiol. 2009, 160:297-306.
24. Rogel M.A., Ormeno-Orrillo E., Martinez-Romero E. Symbiovars in rhizobia reflect bacterial adaptation to legumes. Syst. Appl. Microbiol. 2011, 34:96-104.
25. Sadowsky M.J., Olson E.R., Foster V.E., Kosslak R.M., Verma D.P.S. Two host inducible genes of Rhizobium fredii and characterization of the inducing compound. J. Bacteriol. 1988, 170:171-178.
26. Saidi S., Mnasri B., Mhamdi R. Diversity of nodule-endophytic agrobacteria-like strains associated with different grain legumes in Tunisia. Syst. Appl. Microbiol. 2011, 34:524-530.
27. Sessitsh A., Howieson J.G., Perret X., Antoun H., Martínez E. Advances in Rhizobium research. Crit. Rev. Plant Sci. 2002, 21:323-378.
28. Silva C., Vinuesa P., Eguiarte L.E., Souza V., Romero E.M. Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes. Mol. Ecol. 2005, 14:4033-4050.
29. Thies J.E., Singleton P.W., Bohlool B.B. Influence of the site of indigenous rhizobial populations on establishment and symbiotic performance of introduced rhizobia on field-grown legumes. Appl. Environ. Microbiol. 1991, 57:19-28.
30. Toledo I., Lloret L., Martinez-Romero E. Sinorhizobium americanum sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico. Syst. Appl. Microbiol. 2003, 26:54-64.
31. 2 fixation to P deficiency. Plant Physiol. Biochem. 1996, 34:871-878.
32. Valverde A., Igual J.M., Peix P., Cervantes E., Velázquez E. Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris. Int. J. Syst. Evol. Microbiol. 2006, 56:2631-2637.
33. van Berkum P., Terefework Z., Paulin L., Suomalainen S., Lindström K., Eardly B.D. Discordant phylogenies within the rrn loci of rhizobia. J. Bacteriol. 2003, 185:2988-2998.
34. Vinuesa P., Silva C., Lorite M.J., Izaguirre-Mayoral M.L., Bedmar E.J., Martinez-Romero E. Molecular systematic of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands. Syst. Appl. Microbiol. 2005, 27:702-716.
35. Wang F., Wang E.T., Wu L.J., Sui X.H., Li Y.J., Chen W.X. Rhizobium vallis sp. nov., isolated from nodules of three leguminous species. Int. J. Syst. Evol. Microbiol. 2011, 61:2582-2588.
36. Wei G.H., Tan Z.Y., Zhu M.E., Wang E.T., Han S.Z., et al. Characterization of rhizobia isolated from legume species within the genera Astragalus and Lespedeza grown in the Loess Plateau of China and description of Rhizobium loessense sp. nov. Int. J. Syst. Evol. Microbiol. 2003, 53:1575-1583.
37. Young J.M., Park D.C., Weir B.S. Diversity of 16S rDNA sequences of Rhizobium spp. implications for species determinations. FEMS Microbiol. Lett. 2004, 238:125-131.
38. Zurdo-Piñeiro J.L., García-Fraile P., Rivas R., Peix A., León-Barrios M., Willems A., Mateos P.F., Martínez-Molina E., Velázquez E., van Berkum P. Rhizobia from Lanzarote, the Canary Islands, that nodulate Phaseolus vulgaris have characteristics in common with Sinorhizobium meliloti isolates from mainland Spain. Appl. Environ. Microbiol. 2009, 75:2354-2359.