-
1
-
-
80051555960
-
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
-
Aanes H, Winata CL, Lin CH, Chen JP, Srinivasan KG, Lee SGP, Lim AYM, Hajan HS, Collas P, Bourque G et al. 2011. Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome Research 21: 1328-1338.
-
(2011)
Genome Research
, vol.21
, pp. 1328-1338
-
-
Aanes, H.1
Winata, C.L.2
Lin, C.H.3
Chen, J.P.4
Srinivasan, K.G.5
Lee, S.G.P.6
Lim, A.Y.M.7
Hajan, H.S.8
Collas, P.9
Bourque, G.10
-
2
-
-
0036006061
-
Uptake kinetics of arsenic species in rice plants
-
Abedin MJ, Feldmann J, Meharg AA. 2002. Uptake kinetics of arsenic species in rice plants. Plant Physiology 128: 1120-1128.
-
(2002)
Plant Physiology
, vol.128
, pp. 1120-1128
-
-
Abedin, M.J.1
Feldmann, J.2
Meharg, A.A.3
-
3
-
-
52249114078
-
Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
-
Abercrombie J, Halfhill M, Ranjan P, Rao M, Saxton A, Yuan J, Stewart CN. 2008. Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. BMC Plant Biology 8: 87.
-
(2008)
BMC Plant Biology
, vol.8
, pp. 87
-
-
Abercrombie, J.1
Halfhill, M.2
Ranjan, P.3
Rao, M.4
Saxton, A.5
Yuan, J.6
Stewart, C.N.7
-
5
-
-
0012761311
-
Transient regulation of jasmonic acid-inducible rice MAP kinase gene (OsBWMK1) by diverse biotic and abiotic stresses
-
Agrawal GK, Tamogami S, Iwahashi H, Agrawal VP, Rakwal R. 2003. Transient regulation of jasmonic acid-inducible rice MAP kinase gene (OsBWMK1) by diverse biotic and abiotic stresses. Plant Physiology and Biochemistry 41: 355-361.
-
(2003)
Plant Physiology and Biochemistry
, vol.41
, pp. 355-361
-
-
Agrawal, G.K.1
Tamogami, S.2
Iwahashi, H.3
Agrawal, V.P.4
Rakwal, R.5
-
6
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
7
-
-
0038460026
-
Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice
-
Baxter I, Tchieu J, Sussman MR, Boutry M, Palmgren MG, Gribskov M, Harper JF, Axelsen KB. 2003. Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiology 132: 618-628.
-
(2003)
Plant Physiology
, vol.132
, pp. 618-628
-
-
Baxter, I.1
Tchieu, J.2
Sussman, M.R.3
Boutry, M.4
Palmgren, M.G.5
Gribskov, M.6
Harper, J.F.7
Axelsen, K.B.8
-
9
-
-
33644756519
-
Enhanced arsenate reduction by a CDC25-like tyrosine phosphatase explains increased phytochelatin accumulation in arsenate-tolerant Holcus lanatus
-
Bleeker PM, Hakvoort HWJ, Bliek M, Souer E, Schat H. 2006. Enhanced arsenate reduction by a CDC25-like tyrosine phosphatase explains increased phytochelatin accumulation in arsenate-tolerant Holcus lanatus. The Plant Journal 45: 917-929.
-
(2006)
The Plant Journal
, vol.45
, pp. 917-929
-
-
Bleeker, P.M.1
Hakvoort, H.W.J.2
Bliek, M.3
Souer, E.4
Schat, H.5
-
10
-
-
63549113780
-
Jasmonate passes muster: a receptor and targets for the defense hormone
-
Browse J. 2009. Jasmonate passes muster: a receptor and targets for the defense hormone. Annual Review of Plant Biology 60: 183-205.
-
(2009)
Annual Review of Plant Biology
, vol.60
, pp. 183-205
-
-
Browse, J.1
-
11
-
-
34547727206
-
CO11 complex during jasmonate signalling
-
CO11 complex during jasmonate signalling. Nature 448: 661-662.
-
(2007)
Nature
, vol.448
, pp. 661-662
-
-
Browse, J.1
Thines, B.2
Katsir, L.3
Melotto, M.4
Niu, Y.5
Mandaokar, A.6
Liu, G.H.7
Nomura, K.8
He, S.Y.9
Howe, G.A.10
-
12
-
-
58149481780
-
Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings
-
Chakrabarty D, Trivedi PK, Misra P, Tiwari M, Shri M, Shukla D, Kumar S, Rai A, Pandey A, Nigam D et al. 2009. Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings. Chemosphere 74: 688-702.
-
(2009)
Chemosphere
, vol.74
, pp. 688-702
-
-
Chakrabarty, D.1
Trivedi, P.K.2
Misra, P.3
Tiwari, M.4
Shri, M.5
Shukla, D.6
Kumar, S.7
Rai, A.8
Pandey, A.9
Nigam, D.10
-
13
-
-
0034045986
-
Dual action of the active oxygen species during plant stress responses
-
Dat J, Vandenabeele S, Vranová E, Van Montagu M, Inzé D, Van Breusegem F. 2000. Dual action of the active oxygen species during plant stress responses. Cellular and Molecular Life Sciences 57: 779-795.
-
(2000)
Cellular and Molecular Life Sciences
, vol.57
, pp. 779-795
-
-
Dat, J.1
Vandenabeele, S.2
Vranová, E.3
Van Montagu, M.4
Inzé, D.5
Van Breusegem, F.6
-
14
-
-
79960260124
-
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)
-
Ding Y, Chen Z, Zhu C. 2011. Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa). Journal of Experimental Botany 62: 3563-3573.
-
(2011)
Journal of Experimental Botany
, vol.62
, pp. 3563-3573
-
-
Ding, Y.1
Chen, Z.2
Zhu, C.3
-
16
-
-
77954299992
-
agriGO: a GO analysis toolkit for the agricultural community
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z. 2010. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Research 38(Suppl): W64-W70.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.SUPPL.
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
17
-
-
78349282187
-
Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress
-
Dubey S, Misra P, Dwivedi S, Chatterjee S, Bag S, Mantri S, Asif M, Rai A, Kumar S, Shri M et al. 2010. Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress. BMC Genomics 11: 648.
-
(2010)
BMC Genomics
, vol.11
, pp. 648
-
-
Dubey, S.1
Misra, P.2
Dwivedi, S.3
Chatterjee, S.4
Bag, S.5
Mantri, S.6
Asif, M.7
Rai, A.8
Kumar, S.9
Shri, M.10
-
18
-
-
77953001864
-
Spatial and temporal variations of groundwater arsenic in South and Southeast Asia
-
Fendorf S, Michael HA, van Geen A. 2010. Spatial and temporal variations of groundwater arsenic in South and Southeast Asia. Science 328: 1123-1127.
-
(2010)
Science
, vol.328
, pp. 1123-1127
-
-
Fendorf, S.1
Michael, H.A.2
van Geen, A.3
-
20
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
-
21
-
-
33644825748
-
PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis
-
Gonzalez E, Solano R, Rubio V, Leyva A, Paz-Ares J. 2005. PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis. The Plant Cell 17: 3500-3512.
-
(2005)
The Plant Cell
, vol.17
, pp. 3500-3512
-
-
Gonzalez, E.1
Solano, R.2
Rubio, V.3
Leyva, A.4
Paz-Ares, J.5
-
23
-
-
0034934024
-
Copper- and arsenate-induced oxidative stress in Holcus lanatus L. clones with differential sensitivity
-
Hartley-Whitaker J, Ainsworth G, Meharg AA. 2001. Copper- and arsenate-induced oxidative stress in Holcus lanatus L. clones with differential sensitivity. Plant, Cell & Environment 24: 713-722.
-
(2001)
Plant, Cell & Environment
, vol.24
, pp. 713-722
-
-
Hartley-Whitaker, J.1
Ainsworth, G.2
Meharg, A.A.3
-
24
-
-
77950346035
-
Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
-
He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F et al. 2010. Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids. The Plant Cell 22: 17-33.
-
(2010)
The Plant Cell
, vol.22
, pp. 17-33
-
-
He, G.1
Zhu, X.2
Elling, A.A.3
Chen, L.4
Wang, X.5
Guo, L.6
Liang, M.7
He, H.8
Zhang, H.9
Chen, F.10
-
25
-
-
77954304695
-
DSAP: deep-sequencing small RNA analysis pipeline
-
Huang PJ, Liu YC, Lee CC, Lin WC, Gan RRC, Lyu PC, Tang P. 2010. DSAP: deep-sequencing small RNA analysis pipeline. Nucleic Acids Research 38: W385-W391.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Huang, P.J.1
Liu, Y.C.2
Lee, C.C.3
Lin, W.C.4
Gan, R.R.C.5
Lyu, P.C.6
Tang, P.7
-
27
-
-
19444377602
-
Protection of winter rape photosystem 2 by 24-epibrassinolide under cadmium stress
-
Janeczko A, Koscielniak J, Pilipowicz M, Szarek-Lukaszewska G, Skoczowski A. 2005. Protection of winter rape photosystem 2 by 24-epibrassinolide under cadmium stress. Photosynthetica 43: 293-298.
-
(2005)
Photosynthetica
, vol.43
, pp. 293-298
-
-
Janeczko, A.1
Koscielniak, J.2
Pilipowicz, M.3
Szarek-Lukaszewska, G.4
Skoczowski, A.5
-
28
-
-
3242661817
-
Carbohydrate metabolism in growing rice seedlings under arsenic toxicity
-
Jha AB, Dubey RS. 2004. Carbohydrate metabolism in growing rice seedlings under arsenic toxicity. Journal of Plant Physiology 161: 867-872.
-
(2004)
Journal of Plant Physiology
, vol.161
, pp. 867-872
-
-
Jha, A.B.1
Dubey, R.S.2
-
29
-
-
59049104619
-
NIP1;1, an aquaporin homolog, determines the arsenite sensitivity of Arabidopsis thaliana
-
Kamiya T, Tanaka M, Mitani N, Ma JF, Maeshima M, Fujiwara T. 2009. NIP1;1, an aquaporin homolog, determines the arsenite sensitivity of Arabidopsis thaliana. Journal of Biological Chemistry 284: 2114-2120.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 2114-2120
-
-
Kamiya, T.1
Tanaka, M.2
Mitani, N.3
Ma, J.F.4
Maeshima, M.5
Fujiwara, T.6
-
30
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S. 2000. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28: 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
31
-
-
68249143314
-
The rice aquaporin Lsi1 mediates uptake of methylated arsenic species
-
Li RY, Ago Y, Liu WJ, Mitani N, Feldmann J, McGrath SP, Ma JF, Zhao FJ. 2009b. The rice aquaporin Lsi1 mediates uptake of methylated arsenic species. Plant Physiology 150: 2071-2080.
-
(2009)
Plant Physiology
, vol.150
, pp. 2071-2080
-
-
Li, R.Y.1
Ago, Y.2
Liu, W.J.3
Mitani, N.4
Feldmann, J.5
McGrath, S.P.6
Ma, J.F.7
Zhao, F.J.8
-
32
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
33
-
-
66249099901
-
Mitigation of arsenic accumulation in rice with water management and silicon fertilization
-
Li RY, Stroud JL, Ma JF, McGrath SP, Zhao FJ. 2009a. Mitigation of arsenic accumulation in rice with water management and silicon fertilization. Environmental Science & Technology 43: 3778-3783.
-
(2009)
Environmental Science & Technology
, vol.43
, pp. 3778-3783
-
-
Li, R.Y.1
Stroud, J.L.2
Ma, J.F.3
McGrath, S.P.4
Zhao, F.J.5
-
34
-
-
78650487543
-
Acyl-Lipid Metabolism
-
Li-Beisson Y, Shorrosh B, Beisson F, Andersson MX, Arondel V, Bates PD, Baud S, Bird D, DeBono A, Durrett TP et al. 2010. Acyl-Lipid Metabolism. The Arabidopsis Book e0133.
-
(2010)
The Arabidopsis Book
-
-
Li-Beisson, Y.1
Shorrosh, B.2
Beisson, F.3
Andersson, M.X.4
Arondel, V.5
Bates, P.D.6
Baud, S.7
Bird, D.8
DeBono, A.9
Durrett, T.P.10
-
35
-
-
36949014988
-
Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants
-
Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A. 2007. Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. PLoS Computational Biology 3: e238.
-
(2007)
PLoS Computational Biology
, vol.3
-
-
Lindow, M.1
Jacobsen, A.2
Nygaard, S.3
Mang, Y.4
Krogh, A.5
-
36
-
-
82255164126
-
Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice
-
Liu F, Chang XJ, Ye Y, Xie WB, Wu P, Lian XM. 2011. Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice. Molecular Plant 4: 1105-1122.
-
(2011)
Molecular Plant
, vol.4
, pp. 1105-1122
-
-
Liu, F.1
Chang, X.J.2
Ye, Y.3
Xie, W.B.4
Wu, P.5
Lian, X.M.6
-
37
-
-
42449109504
-
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
-
Liu HH, Tian X, Li YJ, Wu CA, Zheng CC. 2008. Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14: 836-843.
-
(2008)
RNA
, vol.14
, pp. 836-843
-
-
Liu, H.H.1
Tian, X.2
Li, Y.J.3
Wu, C.A.4
Zheng, C.C.5
-
38
-
-
33748797988
-
Arsenic sequestration in iron plaque, its accumulation and speciation in mature rice plants (Oryza sativa L.)
-
Liu WJ, Zhu YG, Hu Y, Williams PN, Gault AG, Meharg AA, Charnock JM, Smith FA. 2006. Arsenic sequestration in iron plaque, its accumulation and speciation in mature rice plants (Oryza sativa L.). Environmental Science & Technology 40: 5730-5736.
-
(2006)
Environmental Science & Technology
, vol.40
, pp. 5730-5736
-
-
Liu, W.J.1
Zhu, Y.G.2
Hu, Y.3
Williams, P.N.4
Gault, A.G.5
Meharg, A.A.6
Charnock, J.M.7
Smith, F.A.8
-
39
-
-
77952884377
-
Profiling of cold-stress-responsive miRNAs in rice by microarrays
-
Lv DK, Bai X, Li Y, Ding XD, Ge Y, Cai H, Ji W, Wu N, Zhu YM. 2010. Profiling of cold-stress-responsive miRNAs in rice by microarrays. Gene 459: 39-47.
-
(2010)
Gene
, vol.459
, pp. 39-47
-
-
Lv, D.K.1
Bai, X.2
Li, Y.3
Ding, X.D.4
Ge, Y.5
Cai, H.6
Ji, W.7
Wu, N.8
Zhu, Y.M.9
-
40
-
-
33645452693
-
A silicon transporter in rice
-
Ma JF, Tamai K, Yamaji N, Mitani N, Konishi S, Katsuhara M, Ishiguro M, Murata Y, Yano M. 2006. A silicon transporter in rice. Nature 440: 688-691.
-
(2006)
Nature
, vol.440
, pp. 688-691
-
-
Ma, J.F.1
Tamai, K.2
Yamaji, N.3
Mitani, N.4
Konishi, S.5
Katsuhara, M.6
Ishiguro, M.7
Murata, Y.8
Yano, M.9
-
41
-
-
48249105465
-
Transporters of arsenite in rice and their role in arsenic accumulation in rice grain
-
Ma JF, Yamaji N, Mitani N, Xu X-Y, Su Y-H, McGrath SP, Zhao FJ. 2008. Transporters of arsenite in rice and their role in arsenic accumulation in rice grain. Proceedings of the National Academy of Sciences, USA 105: 9931-9935.
-
(2008)
Proceedings of the National Academy of Sciences, USA
, vol.105
, pp. 9931-9935
-
-
Ma, J.F.1
Yamaji, N.2
Mitani, N.3
Xu, X.-Y.4
Su, Y.-H.5
McGrath, S.P.6
Zhao, F.J.7
-
42
-
-
34249054275
-
Signaling responses in plants to heavy metal stress
-
Maksymiec W. 2007. Signaling responses in plants to heavy metal stress. Acta Physiologia Plantarum 29: 177-187.
-
(2007)
Acta Physiologia Plantarum
, vol.29
, pp. 177-187
-
-
Maksymiec, W.1
-
43
-
-
27744512711
-
The level of jasmonic acid in Arabidopsis thaliana and Phaseolus coccineus plants under heavy metal stress
-
Maksymiec W, Wianowska D, Dawidowicz AL, Radkiewicz S, Mardarowicz M, Krupa Z. 2005. The level of jasmonic acid in Arabidopsis thaliana and Phaseolus coccineus plants under heavy metal stress. Journal of Plant Physiology 162: 1338-1346.
-
(2005)
Journal of Plant Physiology
, vol.162
, pp. 1338-1346
-
-
Maksymiec, W.1
Wianowska, D.2
Dawidowicz, A.L.3
Radkiewicz, S.4
Mardarowicz, M.5
Krupa, Z.6
-
44
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H. 2006. Functions of microRNAs and related small RNAs in plants. Nature Genetics 38: S31-S36.
-
(2006)
Nature Genetics
, vol.38
-
-
Mallory, A.C.1
Vaucheret, H.2
-
45
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. 2008. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research 18: 1509-1517.
-
(2008)
Genome Research
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
46
-
-
0036213881
-
Arsenic uptake and metabolism in arsenic resistant and nonresistant plant species
-
Meharg AA, Hartley-Whitaker J. 2002. Arsenic uptake and metabolism in arsenic resistant and nonresistant plant species. New Phytologist 154: 29-43.
-
(2002)
New Phytologist
, vol.154
, pp. 29-43
-
-
Meharg, A.A.1
Hartley-Whitaker, J.2
-
47
-
-
0037248892
-
Arsenite transport into paddy rice (Oryza sativa) roots
-
Meharg AA, Jardine L. 2003. Arsenite transport into paddy rice (Oryza sativa) roots. New Phytologist 157: 39-44.
-
(2003)
New Phytologist
, vol.157
, pp. 39-44
-
-
Meharg, A.A.1
Jardine, L.2
-
49
-
-
78149449110
-
Genome-wide analysis of plant metal transporters, with an emphasis on poplar
-
Migeon A, Blaudez D, Wilkins O, Montanini B, Campbell MM, Richaud P, Thomine S, Chalot M. 2010. Genome-wide analysis of plant metal transporters, with an emphasis on poplar. Cellular and Molecular Life Sciences 67: 3763-3784.
-
(2010)
Cellular and Molecular Life Sciences
, vol.67
, pp. 3763-3784
-
-
Migeon, A.1
Blaudez, D.2
Wilkins, O.3
Montanini, B.4
Campbell, M.M.5
Richaud, P.6
Thomine, S.7
Chalot, M.8
-
50
-
-
0036923462
-
Expression of a vegetative-storage-protein gene from Arabidopsis is regulated by copper, senescence and ozone
-
Mira H, Martínez N, Peñarrubia L. 2002. Expression of a vegetative-storage-protein gene from Arabidopsis is regulated by copper, senescence and ozone. Planta 214: 939-946.
-
(2002)
Planta
, vol.214
, pp. 939-946
-
-
Mira, H.1
Martínez, N.2
Peñarrubia, L.3
-
51
-
-
72049103210
-
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
-
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW. 2010. Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. Journal of Experimental Botany 61: 165-177.
-
(2010)
Journal of Experimental Botany
, vol.61
, pp. 165-177
-
-
Moldovan, D.1
Spriggs, A.2
Yang, J.3
Pogson, B.J.4
Dennis, E.S.5
Wilson, I.W.6
-
52
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 5: 621-628.
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
53
-
-
84957375526
-
Arsenical cancer; a review
-
Neubauer O. 1947. Arsenical cancer; a review. British Journal of Cancer 1: 192-251.
-
(1947)
British Journal of Cancer
, vol.1
, pp. 192-251
-
-
Neubauer, O.1
-
55
-
-
79959559453
-
Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast
-
Oda K, Otani M, Uraguchi S, Akihiro T, Fujiwara T. 2011. Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast. Bioscience, Biotechnology, and Biochemistry 75: 1211-1213.
-
(2011)
Bioscience, Biotechnology, and Biochemistry
, vol.75
, pp. 1211-1213
-
-
Oda, K.1
Otani, M.2
Uraguchi, S.3
Akihiro, T.4
Fujiwara, T.5
-
56
-
-
71249099082
-
Time course analysis of gene regulation under cadmium stress in rice
-
Ogawa I, Nakanishi H, Mori S, Nishizawa N. 2009. Time course analysis of gene regulation under cadmium stress in rice. Plant and Soil 325: 97-108.
-
(2009)
Plant and Soil
, vol.325
, pp. 97-108
-
-
Ogawa, I.1
Nakanishi, H.2
Mori, S.3
Nishizawa, N.4
-
57
-
-
33645857990
-
Uptake, translocation and transformation of arsenate and arsenite in sunflower (Helianthus annuus): formation of arsenic-phytochelatin complexes during exposure to high arsenic concentrations
-
Raab A, Schat H, Meharg AA, Feldmann J. 2005. Uptake, translocation and transformation of arsenate and arsenite in sunflower (Helianthus annuus): formation of arsenic-phytochelatin complexes during exposure to high arsenic concentrations. New Phytologist 168: 551-558.
-
(2005)
New Phytologist
, vol.168
, pp. 551-558
-
-
Raab, A.1
Schat, H.2
Meharg, A.A.3
Feldmann, J.4
-
58
-
-
78651416459
-
Arsenic tolerances in rice (Oryza sativa) have a predominant role in transcriptional regulation of a set of genes including sulphur assimilation pathway and antioxidant system
-
Rai A, Tripathi P, Dwivedi S, Dubey S, Shri M, Kumar S, Tripathi PK, Dave R, Kumar A, Singh R et al. 2011. Arsenic tolerances in rice (Oryza sativa) have a predominant role in transcriptional regulation of a set of genes including sulphur assimilation pathway and antioxidant system. Chemosphere 82: 986-995.
-
(2011)
Chemosphere
, vol.82
, pp. 986-995
-
-
Rai, A.1
Tripathi, P.2
Dwivedi, S.3
Dubey, S.4
Shri, M.5
Kumar, S.6
Tripathi, P.K.7
Dave, R.8
Kumar, A.9
Singh, R.10
-
59
-
-
21844464578
-
Proteome analysis of maize roots reveals that oxidative stress is a main contributing factor to plant arsenic toxicity
-
Requejo R, Tena M. 2005. Proteome analysis of maize roots reveals that oxidative stress is a main contributing factor to plant arsenic toxicity. Phytochemistry 66: 1519-1528.
-
(2005)
Phytochemistry
, vol.66
, pp. 1519-1528
-
-
Requejo, R.1
Tena, M.2
-
60
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP. 2002. Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
61
-
-
26444617525
-
Identification of 33 rice aquaporin genes and analysis of their expression and function
-
Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M. 2005. Identification of 33 rice aquaporin genes and analysis of their expression and function. Plant & Cell Physiology 46: 1568-1577.
-
(2005)
Plant & Cell Physiology
, vol.46
, pp. 1568-1577
-
-
Sakurai, J.1
Ishikawa, F.2
Yamaguchi, T.3
Uemura, M.4
Maeshima, M.5
-
62
-
-
77955214742
-
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
-
Severin A, Woody J, Bolon YT, Joseph B, Diers B, Farmer A, Muehlbauer G, Nelson R, Grant D, Specht J et al. 2010. RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biology 10: 160.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 160
-
-
Severin, A.1
Woody, J.2
Bolon, Y.T.3
Joseph, B.4
Diers, B.5
Farmer, A.6
Muehlbauer, G.7
Nelson, R.8
Grant, D.9
Specht, J.10
-
63
-
-
4143054697
-
Phosphate transport in Arabidopsis: Pht1;1 and Pht1;4 play a major role in phosphate acquisition from both low- and high-phosphate environments
-
Shin H, Shin HS, Dewbre GR, Harrison MJ. 2004. Phosphate transport in Arabidopsis: Pht1;1 and Pht1;4 play a major role in phosphate acquisition from both low- and high-phosphate environments. The Plant Journal 39: 629-642.
-
(2004)
The Plant Journal
, vol.39
, pp. 629-642
-
-
Shin, H.1
Shin, H.S.2
Dewbre, G.R.3
Harrison, M.J.4
-
64
-
-
78650426070
-
Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters
-
Song WY, Park J, Mendoza-Cózatl DG, Suter-Grotemeyer M, Shim D, Hörtensteiner S, Geisler M, Weder B, Rea PA, Rentsch D et al. 2010. Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Proceedings of the National Academy of Sciences, USA 107: 21187-21192.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 21187-21192
-
-
Song, W.Y.1
Park, J.2
Mendoza-Cózatl, D.G.3
Suter-Grotemeyer, M.4
Shim, D.5
Hörtensteiner, S.6
Geisler, M.7
Weder, B.8
Rea, P.A.9
Rentsch, D.10
-
65
-
-
0842334828
-
Physiological response of maize to arsenic contamination
-
Stoeva N, Berova M, Zlatev Z. 2003. Physiological response of maize to arsenic contamination. Biologia Plantarum 47: 449-452.
-
(2003)
Biologia Plantarum
, vol.47
, pp. 449-452
-
-
Stoeva, N.1
Berova, M.2
Zlatev, Z.3
-
66
-
-
34347263491
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
-
Sunkar R, Chinnusamy V, Zhu J, Zhu JK. 2007. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends in Plant Science 12: 301-309.
-
(2007)
Trends in Plant Science
, vol.12
, pp. 301-309
-
-
Sunkar, R.1
Chinnusamy, V.2
Zhu, J.3
Zhu, J.K.4
-
67
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK. 2004. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. The Plant Cell 16: 2001-2019.
-
(2004)
The Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
68
-
-
80053579258
-
The OsNRAMP1 iron transporter is involved in Cd accumulation in rice
-
Takahashi R, Ishimaru Y, Senoura T, Shimo H, Ishikawa S, Arao T, Nakanishi H, Nishizawa NK. 2011. The OsNRAMP1 iron transporter is involved in Cd accumulation in rice. Journal of Experimental Botany 62: 4843-4850.
-
(2011)
Journal of Experimental Botany
, vol.62
, pp. 4843-4850
-
-
Takahashi, R.1
Ishimaru, Y.2
Senoura, T.3
Shimo, H.4
Ishikawa, S.5
Arao, T.6
Nakanishi, H.7
Nishizawa, N.K.8
-
71
-
-
41649116602
-
Plant ABC proteins - a unified nomenclature and updated inventory
-
Verrier PJ, Bird D, Burla B, Dassa E, Forestier C, Geisler M, Klein M, Kolukisaoglu Ü, Lee Y, Martinoia E et al. 2008. Plant ABC proteins - a unified nomenclature and updated inventory. Trends in Plant Science 13: 151-159.
-
(2008)
Trends in Plant Science
, vol.13
, pp. 151-159
-
-
Verrier, P.J.1
Bird, D.2
Burla, B.3
Dassa, E.4
Forestier, C.5
Geisler, M.6
Klein, M.7
Kolukisaoglu, U.8
Lee, Y.9
Martinoia, E.10
-
72
-
-
75249095274
-
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
-
Wang L, Feng Z, Wang X, Wang X, Zhang X. 2010. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
-
(2010)
Bioinformatics
, vol.26
, pp. 136-138
-
-
Wang, L.1
Feng, Z.2
Wang, X.3
Wang, X.4
Zhang, X.5
-
73
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang XF, Elling AA, Li XY, Li N, Peng ZY, He GM, Sun H, Qi YJ, Liu XS, Deng XW. 2009. Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. The Plant Cell 21: 1053-1069.
-
(2009)
The Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.F.1
Elling, A.A.2
Li, X.Y.3
Li, N.4
Peng, Z.Y.5
He, G.M.6
Sun, H.7
Qi, Y.J.8
Liu, X.S.9
Deng, X.W.10
-
74
-
-
66349119276
-
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data
-
Wang YP, Li KB. 2009. Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. BMC Genomics 10: 218.
-
(2009)
BMC Genomics
, vol.10
, pp. 218
-
-
Wang, Y.P.1
Li, K.B.2
-
75
-
-
0032170826
-
Glutathione metabolic genes coordinately respond to heavy metals and jasmonic acid in Arabidopsis
-
Xiang C, Oliver DJ. 1998. Glutathione metabolic genes coordinately respond to heavy metals and jasmonic acid in Arabidopsis. The Plant Cell 10: 1539-1550.
-
(1998)
The Plant Cell
, vol.10
, pp. 1539-1550
-
-
Xiang, C.1
Oliver, D.J.2
-
76
-
-
79961174645
-
Overexpression of Arabidopsis ACBP3 Enhances NPR1-Dependent Plant Resistance to Pseudomonas syringe pv tomato DC3000
-
Xiao S, Chye ML. 2011a. Overexpression of Arabidopsis ACBP3 Enhances NPR1-Dependent Plant Resistance to Pseudomonas syringe pv tomato DC3000. Plant Physiology 156: 2069-2081.
-
(2011)
Plant Physiology
, vol.156
, pp. 2069-2081
-
-
Xiao, S.1
Chye, M.L.2
-
77
-
-
78651260650
-
New roles for acyl-CoA-binding proteins (ACBPs) in plant development, stress responses and lipid metabolism
-
Xiao S, Chye ML. 2011b. New roles for acyl-CoA-binding proteins (ACBPs) in plant development, stress responses and lipid metabolism. Progress in Lipid Research 50: 141-151.
-
(2011)
Progress in Lipid Research
, vol.50
, pp. 141-151
-
-
Xiao, S.1
Chye, M.L.2
-
78
-
-
57749113627
-
A transporter regulating silicon distribution in rice shoots
-
Yamaji N, Mitatni N, Ma JF. 2008. A transporter regulating silicon distribution in rice shoots. The Plant Cell 20: 1381-1389.
-
(2008)
The Plant Cell
, vol.20
, pp. 1381-1389
-
-
Yamaji, N.1
Mitatni, N.2
Ma, J.F.3
-
79
-
-
78651307694
-
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
-
Yang JH, Li JH, Shao P, Zhou H, Chen YQ, Qu LH. 2011. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Research 39: D202-D209.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Yang, J.H.1
Li, J.H.2
Shao, P.3
Zhou, H.4
Chen, Y.Q.5
Qu, L.H.6
-
80
-
-
78651337578
-
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
-
Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J. 2011. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Research 39: D1114-D1117.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Zhang, H.1
Jin, J.2
Tang, L.3
Zhao, Y.4
Gu, X.5
Gao, G.6
Luo, J.7
-
81
-
-
75549083571
-
PMRD: plant microRNA database
-
Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z. 2010. PMRD: plant microRNA database. Nucleic Acids Research 38: D806-D813.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Zhang, Z.1
Yu, J.2
Li, D.3
Zhang, Z.4
Liu, F.5
Zhou, X.6
Wang, T.7
Ling, Y.8
Su, Z.9
-
82
-
-
33846537402
-
Identification of drought-induced microRNAs in rice
-
Zhao B, Liang R, Ge L, Li W, Xiao H, Lin H, Ruan K, Jin Y. 2007. Identification of drought-induced microRNAs in rice. Biochemical and Biophysical Research Communications 354: 585-590.
-
(2007)
Biochemical and Biophysical Research Communications
, vol.354
, pp. 585-590
-
-
Zhao, B.1
Liang, R.2
Ge, L.3
Li, W.4
Xiao, H.5
Lin, H.6
Ruan, K.7
Jin, Y.8
-
84
-
-
77952513568
-
Arsenic as a food chain contaminant: mechanisms of plant uptake and metabolism and mitigation strategies
-
Zhao FJ, McGrath SP, Meharg AA. 2010. Arsenic as a food chain contaminant: mechanisms of plant uptake and metabolism and mitigation strategies. Annual Review of Plant Biology 61: 535-559.
-
(2010)
Annual Review of Plant Biology
, vol.61
, pp. 535-559
-
-
Zhao, F.J.1
McGrath, S.P.2
Meharg, A.A.3
-
85
-
-
78649729316
-
Spatial distribution of arsenic and temporal variation of its concentration in rice
-
Zheng MZ, Cai C, Hu Y, Sun GX, Williams PN, Cui HJ, Li G, Zhao FJ, Zhu YG. 2011. Spatial distribution of arsenic and temporal variation of its concentration in rice. New Phytologist 189: 200-209.
-
(2011)
New Phytologist
, vol.189
, pp. 200-209
-
-
Zheng, M.Z.1
Cai, C.2
Hu, Y.3
Sun, G.X.4
Williams, P.N.5
Cui, H.J.6
Li, G.7
Zhao, F.J.8
Zhu, Y.G.9
-
86
-
-
44649164358
-
Exposure to inorganic arsenic from rice: a global health issue?
-
Zhu YG, Williams PN, Meharg AA. 2008. Exposure to inorganic arsenic from rice: a global health issue? Environmental Pollution 154: 169-171.
-
(2008)
Environmental Pollution
, vol.154
, pp. 169-171
-
-
Zhu, Y.G.1
Williams, P.N.2
Meharg, A.A.3
|