메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus

Author keywords

[No Author keywords available]

Indexed keywords

NEUROTRANSMITTER RECEPTOR;

EID: 84861472365     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037833     Document Type: Article
Times cited : (15)

References (61)
  • 1
    • 33747748119 scopus 로고    scopus 로고
    • Identification of genes that express in response to light exposure and express rhythmically in a circadian manner in the mouse suprachiasmatic nucleus
    • Araki R, Nakahara M, Fukumura R, Takahashi H, Mori K, et al. (2006) Identification of genes that express in response to light exposure and express rhythmically in a circadian manner in the mouse suprachiasmatic nucleus. Brain Res 1098: 9-18.
    • (2006) Brain Res , vol.1098 , pp. 9-18
    • Araki, R.1    Nakahara, M.2    Fukumura, R.3    Takahashi, H.4    Mori, K.5
  • 2
    • 38649085332 scopus 로고    scopus 로고
    • Identification of novel light-induced genes in the suprachiasmatic nucleus
    • Porterfield VM, Piontkivska H, Mintz EM, (2007) Identification of novel light-induced genes in the suprachiasmatic nucleus. BMC Neurosci 8: 98.
    • (2007) BMC Neurosci , vol.8 , pp. 98
    • Porterfield, V.M.1    Piontkivska, H.2    Mintz, E.M.3
  • 4
    • 0032752042 scopus 로고    scopus 로고
    • Forty years of PRCs-what have we learned?
    • Johnson CH, (1999) Forty years of PRCs-what have we learned? Chronobiol Int 16: 711-743.
    • (1999) Chronobiol Int , vol.16 , pp. 711-743
    • Johnson, C.H.1
  • 5
    • 4544355300 scopus 로고    scopus 로고
    • It's all in the timing: many clocks, many outputs
    • Panda S, Hogenesch JB, (2004) It's all in the timing: many clocks, many outputs. J Biol Rhythms 19: 374-387.
    • (2004) J Biol Rhythms , vol.19 , pp. 374-387
    • Panda, S.1    Hogenesch, J.B.2
  • 6
    • 68149098860 scopus 로고    scopus 로고
    • Temporal patterns of light-induced immediate-early gene expression in the suprachiasmatic nucleus
    • Porterfield VM, Mintz EM, (2009) Temporal patterns of light-induced immediate-early gene expression in the suprachiasmatic nucleus. Neurosci Lett 463: 70-73.
    • (2009) Neurosci Lett , vol.463 , pp. 70-73
    • Porterfield, V.M.1    Mintz, E.M.2
  • 7
    • 77951897767 scopus 로고    scopus 로고
    • Systems biology of mammalian circadian clocks
    • Ukai H, Ueda HR, (2010) Systems biology of mammalian circadian clocks. Annu Rev Physiol 72: 579-603.
    • (2010) Annu Rev Physiol , vol.72 , pp. 579-603
    • Ukai, H.1    Ueda, H.R.2
  • 8
    • 0030017669 scopus 로고    scopus 로고
    • Light, immediate-early genes, and circadian rhythms
    • Kornhauser JM, Mayo KE, Takahashi JS, (1996) Light, immediate-early genes, and circadian rhythms. Behav Genet 26: 221-240.
    • (1996) Behav Genet , vol.26 , pp. 221-240
    • Kornhauser, J.M.1    Mayo, K.E.2    Takahashi, J.S.3
  • 9
    • 0345596433 scopus 로고    scopus 로고
    • A differential response of two putative mammalian circadian regulators, mPer1 and mPer2, to light
    • Albrecht U, Sun ZS, Eichele G, Lee CC, (1997) A differential response of two putative mammalian circadian regulators, mPer1 and mPer2, to light. Cell 91: 1055-1064.
    • (1997) Cell , vol.91 , pp. 1055-1064
    • Albrecht, U.1    Sun, Z.S.2    Eichele, G.3    Lee, C.C.4
  • 10
    • 0031472474 scopus 로고    scopus 로고
    • Two Period homologs: circadian expression and photic regulation in the suprachiasmatic nuclei
    • Shearman LP, Zylka MJ, Weaver DR, Kolakowski LF Jr, Reppert SM, (1997) Two Period homologs: circadian expression and photic regulation in the suprachiasmatic nuclei. Neuron 19: 1261-1269.
    • (1997) Neuron , vol.19 , pp. 1261-1269
    • Shearman, L.P.1    Zylka, M.J.2    Weaver, D.R.3    Kolakowski Jr., L.F.4    Reppert, S.M.5
  • 11
    • 0031459479 scopus 로고    scopus 로고
    • Light-induced resetting of a mammalian circadian clock is associated with rapid induction of the mPer1 transcript
    • Shigeyoshi Y, Taguchi K, Yamamoto S, Takekida S, Yan L, et al. (1997) Light-induced resetting of a mammalian circadian clock is associated with rapid induction of the mPer1 transcript. Cell 91: 1043-1053.
    • (1997) Cell , vol.91 , pp. 1043-1053
    • Shigeyoshi, Y.1    Taguchi, K.2    Yamamoto, S.3    Takekida, S.4    Yan, L.5
  • 12
    • 79956300350 scopus 로고    scopus 로고
    • Understanding systems-level properties: timely stories from the study of clocks
    • Hogenesch JB, Ueda HR, (2011) Understanding systems-level properties: timely stories from the study of clocks. Nat Rev Genet 12: 407-416.
    • (2011) Nat Rev Genet , vol.12 , pp. 407-416
    • Hogenesch, J.B.1    Ueda, H.R.2
  • 13
    • 80052899933 scopus 로고    scopus 로고
    • Genetics of circadian rhythms in Mammalian model organisms
    • Lowrey PL, Takahashi JS, (2011) Genetics of circadian rhythms in Mammalian model organisms. Adv Genet 74: 175-230.
    • (2011) Adv Genet , vol.74 , pp. 175-230
    • Lowrey, P.L.1    Takahashi, J.S.2
  • 14
    • 84856753406 scopus 로고    scopus 로고
    • Transcription-based oscillator model for light-induced splitting as antiphase circadian gene expression in the suprachiasmatic nuclei
    • Schroder S, Herzog ED, Kiss IZ, (2012) Transcription-based oscillator model for light-induced splitting as antiphase circadian gene expression in the suprachiasmatic nuclei. J Biol Rhythms 27: 79-90.
    • (2012) J Biol Rhythms , vol.27 , pp. 79-90
    • Schroder, S.1    Herzog, E.D.2    Kiss, I.Z.3
  • 15
    • 34250367538 scopus 로고    scopus 로고
    • A molecular model for intercellular synchronization in the mammalian circadian clock
    • To TL, Henson MA, Herzog ED, Doyle FJ, 3rd, (2007) A molecular model for intercellular synchronization in the mammalian circadian clock. Biophys J 92: 3792-3803.
    • (2007) Biophys J , vol.92 , pp. 3792-3803
    • To, T.L.1    Henson, M.A.2    Herzog, E.D.3    Doyle III, F.J.4
  • 16
    • 14644423201 scopus 로고    scopus 로고
    • Orchestrating time: arrangements of the brain circadian clock
    • Antle MC, Silver R, (2005) Orchestrating time: arrangements of the brain circadian clock. Trends Neurosci 28: 145-151.
    • (2005) Trends Neurosci , vol.28 , pp. 145-151
    • Antle, M.C.1    Silver, R.2
  • 17
    • 33846011859 scopus 로고    scopus 로고
    • SCN organization reconsidered
    • Morin LP, (2007) SCN organization reconsidered. J Biol Rhythms 22: 3-13.
    • (2007) J Biol Rhythms , vol.22 , pp. 3-13
    • Morin, L.P.1
  • 19
    • 0034038283 scopus 로고    scopus 로고
    • Retinal innervation of calbindin-D28K cells in the hamster suprachiasmatic nucleus: ultrastructural characterization
    • Bryant DN, LeSauter J, Silver R, Romero MT, (2000) Retinal innervation of calbindin-D28K cells in the hamster suprachiasmatic nucleus: ultrastructural characterization. J Biol Rhythms 15: 103-111.
    • (2000) J Biol Rhythms , vol.15 , pp. 103-111
    • Bryant, D.N.1    LeSauter, J.2    Silver, R.3    Romero, M.T.4
  • 20
    • 0024531984 scopus 로고
    • Vasoactive intestinal peptide (VIP)-like immunoreactive neurons located in the rat suprachiasmatic nucleus receive a direct retinal projection
    • Ibata Y, Takahashi Y, Okamura H, Kawakami F, Terubayashi H, et al. (1989) Vasoactive intestinal peptide (VIP)-like immunoreactive neurons located in the rat suprachiasmatic nucleus receive a direct retinal projection. Neurosci Lett 97: 1-5.
    • (1989) Neurosci Lett , vol.97 , pp. 1-5
    • Ibata, Y.1    Takahashi, Y.2    Okamura, H.3    Kawakami, F.4    Terubayashi, H.5
  • 21
    • 0030748140 scopus 로고    scopus 로고
    • Direct retinal projections to GRP neurons in the suprachiasmatic nucleus of the rat
    • Tanaka M, Hayashi S, Tamada Y, Ikeda T, Hisa Y, et al. (1997) Direct retinal projections to GRP neurons in the suprachiasmatic nucleus of the rat. Neuroreport 8: 2187-2191.
    • (1997) Neuroreport , vol.8 , pp. 2187-2191
    • Tanaka, M.1    Hayashi, S.2    Tamada, Y.3    Ikeda, T.4    Hisa, Y.5
  • 22
    • 0842301344 scopus 로고    scopus 로고
    • Phenotype matters: identification of light-responsive cells in the mouse suprachiasmatic nucleus
    • Karatsoreos IN, Yan L, LeSauter J, Silver R, (2004) Phenotype matters: identification of light-responsive cells in the mouse suprachiasmatic nucleus. J Neurosci 24: 68-75.
    • (2004) J Neurosci , vol.24 , pp. 68-75
    • Karatsoreos, I.N.1    Yan, L.2    LeSauter, J.3    Silver, R.4
  • 23
    • 0036430296 scopus 로고    scopus 로고
    • Differential induction and localization of mPer1 and mPer2 during advancing and delaying phase shifts
    • Yan L, Silver R, (2002) Differential induction and localization of mPer1 and mPer2 during advancing and delaying phase shifts. Eur J Neurosci 16: 1531-1540.
    • (2002) Eur J Neurosci , vol.16 , pp. 1531-1540
    • Yan, L.1    Silver, R.2
  • 24
    • 1542329644 scopus 로고    scopus 로고
    • Resetting the brain clock: time course and localization of mPER1 and mPER2 protein expression in suprachiasmatic nuclei during phase shifts
    • Yan L, Silver R, (2004) Resetting the brain clock: time course and localization of mPER1 and mPER2 protein expression in suprachiasmatic nuclei during phase shifts. Eur J Neurosci 19: 1105-1109.
    • (2004) Eur J Neurosci , vol.19 , pp. 1105-1109
    • Yan, L.1    Silver, R.2
  • 25
    • 0037194790 scopus 로고    scopus 로고
    • Coordination of circadian timing in mammals
    • Reppert SM, Weaver DR, (2002) Coordination of circadian timing in mammals. Nature 418: 935-941.
    • (2002) Nature , vol.418 , pp. 935-941
    • Reppert, S.M.1    Weaver, D.R.2
  • 26
    • 77951927020 scopus 로고    scopus 로고
    • Suprachiasmatic nucleus: cell autonomy and network properties
    • Welsh DK, Takahashi JS, Kay SA, (2010) Suprachiasmatic nucleus: cell autonomy and network properties. Annu Rev Physiol 72: 551-577.
    • (2010) Annu Rev Physiol , vol.72 , pp. 551-577
    • Welsh, D.K.1    Takahashi, J.S.2    Kay, S.A.3
  • 27
    • 0025311122 scopus 로고
    • Light regulates expression of a Fos-related protein in rat suprachiasmatic nuclei
    • Aronin N, Sagar SM, Sharp FR, Schwartz WJ, (1990) Light regulates expression of a Fos-related protein in rat suprachiasmatic nuclei. Proc Natl Acad Sci U S A 87: 5959-5962.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 5959-5962
    • Aronin, N.1    Sagar, S.M.2    Sharp, F.R.3    Schwartz, W.J.4
  • 28
    • 0025081480 scopus 로고
    • Photic regulation of c-fos expression in neural components governing the entrainment of circadian rhythms
    • Earnest DJ, Iadarola M, Yeh HH, Olschowka JA, (1990) Photic regulation of c-fos expression in neural components governing the entrainment of circadian rhythms. Exp Neurol 109: 353-361.
    • (1990) Exp Neurol , vol.109 , pp. 353-361
    • Earnest, D.J.1    Iadarola, M.2    Yeh, H.H.3    Olschowka, J.A.4
  • 29
    • 0024997541 scopus 로고
    • Photic and circadian regulation of c-fos gene expression in the hamster suprachiasmatic nucleus
    • Kornhauser JM, Nelson DE, Mayo KE, Takahashi JS, (1990) Photic and circadian regulation of c-fos gene expression in the hamster suprachiasmatic nucleus. Neuron 5: 127-134.
    • (1990) Neuron , vol.5 , pp. 127-134
    • Kornhauser, J.M.1    Nelson, D.E.2    Mayo, K.E.3    Takahashi, J.S.4
  • 30
    • 0025339876 scopus 로고
    • Light pulses that shift rhythms induce gene expression in the suprachiasmatic nucleus
    • Rusak B, Robertson HA, Wisden W, Hunt SP, (1990) Light pulses that shift rhythms induce gene expression in the suprachiasmatic nucleus. Science 248: 1237-1240.
    • (1990) Science , vol.248 , pp. 1237-1240
    • Rusak, B.1    Robertson, H.A.2    Wisden, W.3    Hunt, S.P.4
  • 31
    • 31144448054 scopus 로고    scopus 로고
    • Complex organization of mouse and rat suprachiasmatic nucleus
    • Morin LP, Shivers KY, Blanchard JH, Muscat L, (2006) Complex organization of mouse and rat suprachiasmatic nucleus. Neuroscience 137: 1285-1297.
    • (2006) Neuroscience , vol.137 , pp. 1285-1297
    • Morin, L.P.1    Shivers, K.Y.2    Blanchard, J.H.3    Muscat, L.4
  • 32
    • 33845976348 scopus 로고    scopus 로고
    • Gates and oscillators II: Zeitgebers and the network model of the brain clock
    • Antle MC, Foley NC, Foley DK, Silver R, (2007) Gates and oscillators II: Zeitgebers and the network model of the brain clock. J Biol Rhythms 22: 14-25.
    • (2007) J Biol Rhythms , vol.22 , pp. 14-25
    • Antle, M.C.1    Foley, N.C.2    Foley, D.K.3    Silver, R.4
  • 33
    • 33845974454 scopus 로고    scopus 로고
    • Gate cells see the light
    • Welsh DK, (2007) Gate cells see the light. J Biol Rhythms 22: 26-28.
    • (2007) J Biol Rhythms , vol.22 , pp. 26-28
    • Welsh, D.K.1
  • 34
    • 0022549574 scopus 로고
    • Suprachiasmatic nucleus vasopressin messenger RNA: circadian variation in normal and Brattleboro rats
    • Uhl GR, Reppert SM, (1986) Suprachiasmatic nucleus vasopressin messenger RNA: circadian variation in normal and Brattleboro rats. Science 232: 390-393.
    • (1986) Science , vol.232 , pp. 390-393
    • Uhl, G.R.1    Reppert, S.M.2
  • 35
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 36
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA, (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 37
    • 41449112432 scopus 로고    scopus 로고
    • From promoter analysis to transcriptional regulatory network prediction using PAINT
    • Gonye GE, Chakravarthula P, Schwaber JS, Vadigepalli R, (2007) From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods Mol Biol 408: 49-68.
    • (2007) Methods Mol Biol , vol.408 , pp. 49-68
    • Gonye, G.E.1    Chakravarthula, P.2    Schwaber, J.S.3    Vadigepalli, R.4
  • 38
    • 0142074896 scopus 로고    scopus 로고
    • PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification
    • Vadigepalli R, Chakravarthula P, Zak DE, Schwaber JS, Gonye GE, (2003) PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. OMICS 7: 235-252.
    • (2003) OMICS , vol.7 , pp. 235-252
    • Vadigepalli, R.1    Chakravarthula, P.2    Zak, D.E.3    Schwaber, J.S.4    Gonye, G.E.5
  • 39
    • 0141707813 scopus 로고    scopus 로고
    • Emerging roles for E2F: beyond the G1/S transition and DNA replication
    • Cam H, Dynlacht BD, (2003) Emerging roles for E2F: beyond the G1/S transition and DNA replication. Cancer Cell 3: 311-316.
    • (2003) Cancer Cell , vol.3 , pp. 311-316
    • Cam, H.1    Dynlacht, B.D.2
  • 40
    • 70350501532 scopus 로고    scopus 로고
    • PAX3 across the spectrum: from melanoblast to melanoma
    • Medic S, Ziman M, (2009) PAX3 across the spectrum: from melanoblast to melanoma. Crit Rev Biochem Mol Biol 44: 85-97.
    • (2009) Crit Rev Biochem Mol Biol , vol.44 , pp. 85-97
    • Medic, S.1    Ziman, M.2
  • 41
    • 33847355216 scopus 로고    scopus 로고
    • The Ets transcription factor GABP is required for cell-cycle progression
    • Yang ZF, Mott S, Rosmarin AG, (2007) The Ets transcription factor GABP is required for cell-cycle progression. Nat Cell Biol 9: 339-346.
    • (2007) Nat Cell Biol , vol.9 , pp. 339-346
    • Yang, Z.F.1    Mott, S.2    Rosmarin, A.G.3
  • 42
    • 45849087630 scopus 로고    scopus 로고
    • High throughput gene expression measurement with real time PCR in a microfluidic dynamic array
    • Spurgeon SL, Jones RC, Ramakrishnan R, (2008) High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS One 3: e1662.
    • (2008) PLoS One , vol.3
    • Spurgeon, S.L.1    Jones, R.C.2    Ramakrishnan, R.3
  • 43
    • 0032102386 scopus 로고    scopus 로고
    • Three period homologs in mammals: differential light responses in the suprachiasmatic circadian clock and oscillating transcripts outside of brain
    • Zylka MJ, Shearman LP, Weaver DR, Reppert SM, (1998) Three period homologs in mammals: differential light responses in the suprachiasmatic circadian clock and oscillating transcripts outside of brain. Neuron 20: 1103-1110.
    • (1998) Neuron , vol.20 , pp. 1103-1110
    • Zylka, M.J.1    Shearman, L.P.2    Weaver, D.R.3    Reppert, S.M.4
  • 44
    • 0026695395 scopus 로고
    • Circadian variation in photic regulation of immediate-early gene mRNAs in rat suprachiasmatic nucleus cells
    • Rusak B, McNaughton L, Robertson HA, Hunt SP, (1992) Circadian variation in photic regulation of immediate-early gene mRNAs in rat suprachiasmatic nucleus cells. Brain Res Mol Brain Res 14: 124-130.
    • (1992) Brain Res Mol Brain Res , vol.14 , pp. 124-130
    • Rusak, B.1    McNaughton, L.2    Robertson, H.A.3    Hunt, S.P.4
  • 45
    • 0030800739 scopus 로고    scopus 로고
    • Circadian oscillation of a mammalian homologue of the Drosophila period gene
    • Tei H, Okamura H, Shigeyoshi Y, Fukuhara C, Ozawa R, et al. (1997) Circadian oscillation of a mammalian homologue of the Drosophila period gene. Nature 389: 512-516.
    • (1997) Nature , vol.389 , pp. 512-516
    • Tei, H.1    Okamura, H.2    Shigeyoshi, Y.3    Fukuhara, C.4    Ozawa, R.5
  • 46
    • 0031012135 scopus 로고    scopus 로고
    • Resetting the biological clock: mediation of nocturnal CREB phosphorylation via light, glutamate, and nitric oxide
    • Ding JM, Faiman LE, Hurst WJ, Kuriashkina LR, Gillette MU, (1997) Resetting the biological clock: mediation of nocturnal CREB phosphorylation via light, glutamate, and nitric oxide. J Neurosci 17: 667-675.
    • (1997) J Neurosci , vol.17 , pp. 667-675
    • Ding, J.M.1    Faiman, L.E.2    Hurst, W.J.3    Kuriashkina, L.R.4    Gillette, M.U.5
  • 47
    • 0027213167 scopus 로고
    • Regulation of CREB phosphorylation in the suprachiasmatic nucleus by light and a circadian clock
    • Ginty DD, Kornhauser JM, Thompson MA, Bading H, Mayo KE, et al. (1993) Regulation of CREB phosphorylation in the suprachiasmatic nucleus by light and a circadian clock. Science 260: 238-241.
    • (1993) Science , vol.260 , pp. 238-241
    • Ginty, D.D.1    Kornhauser, J.M.2    Thompson, M.A.3    Bading, H.4    Mayo, K.E.5
  • 48
    • 0032250181 scopus 로고    scopus 로고
    • Light and circadian rhythmicity regulate MAP kinase activation in the suprachiasmatic nuclei
    • Obrietan K, Impey S, Storm DR, (1998) Light and circadian rhythmicity regulate MAP kinase activation in the suprachiasmatic nuclei. Nat Neurosci 1: 693-700.
    • (1998) Nat Neurosci , vol.1 , pp. 693-700
    • Obrietan, K.1    Impey, S.2    Storm, D.R.3
  • 51
    • 33749400168 scopus 로고    scopus 로고
    • Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
    • Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, et al. (2006) Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res 16: 1299-1309.
    • (2006) Genome Res , vol.16 , pp. 1299-1309
    • Dostie, J.1    Richmond, T.A.2    Arnaout, R.A.3    Selzer, R.R.4    Lee, W.L.5
  • 52
    • 0033573990 scopus 로고    scopus 로고
    • GA-binding protein factors, in concert with the coactivator CREB binding protein/p300, control the induction of the interleukin 16 promoter in T lymphocytes
    • Bannert N, Avots A, Baier M, Serfling E, Kurth R, (1999) GA-binding protein factors, in concert with the coactivator CREB binding protein/p300, control the induction of the interleukin 16 promoter in T lymphocytes. Proc Natl Acad Sci U S A 96: 1541-1546.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 1541-1546
    • Bannert, N.1    Avots, A.2    Baier, M.3    Serfling, E.4    Kurth, R.5
  • 53
    • 40649108760 scopus 로고    scopus 로고
    • Identification and structural characterization of a CBP/p300-binding domain from the ETS family transcription factor GABP alpha
    • Kang HS, Nelson ML, Mackereth CD, Scharpf M, Graves BJ, et al. (2008) Identification and structural characterization of a CBP/p300-binding domain from the ETS family transcription factor GABP alpha. J Mol Biol 377: 636-646.
    • (2008) J Mol Biol , vol.377 , pp. 636-646
    • Kang, H.S.1    Nelson, M.L.2    Mackereth, C.D.3    Scharpf, M.4    Graves, B.J.5
  • 54
    • 80052389765 scopus 로고    scopus 로고
    • Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity
    • Clarke C, Doolan P, Barron N, Meleady P, O'Sullivan F, et al. (2011) Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity. J Biotechnol 155: 350-359.
    • (2011) J Biotechnol , vol.155 , pp. 350-359
    • Clarke, C.1    Doolan, P.2    Barron, N.3    Meleady, P.4    O'Sullivan, F.5
  • 56
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Article17
    • Zhang B, Horvath S, (2005) A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 4: Article17.
    • (2005) Stat Appl Genet Mol Biol , vol.4
    • Zhang, B.1    Horvath, S.2
  • 58
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 59
    • 38449101120 scopus 로고    scopus 로고
    • Integration of biological networks and gene expression data using Cytoscape
    • Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, et al. (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2: 2366-2382.
    • (2007) Nat Protoc , vol.2 , pp. 2366-2382
    • Cline, M.S.1    Smoot, M.2    Cerami, E.3    Kuchinsky, A.4    Landys, N.5
  • 60
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.