메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Expansion and evolution of the X-linked testis specific multigene families in the melanogaster species subgroup

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CK2BETATES GENE; CONTROLLED STUDY; DINE 1 GENE; DROSOPHILA; DROSOPHILA MELANOGASTER; DROSOPHILA SECHELLIA; DROSOPHILA SIMULANS; GENE; GENE AMPLIFICATION; GENE CLUSTER; GENE DUPLICATION; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NACBETATES GENE; NONHUMAN; OPEN READING FRAME; PHOSPHORYLATION; PROMOTER REGION; TRANSPOSON; ANIMAL; CHROMOSOME MAP; DNA SEQUENCE; GENETICS; MALE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

EID: 84861361747     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037738     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • Hahn MW, Han MV, Han SG, (2007) Gene family evolution across 12 Drosophila genomes. PLoS Genet 3: e197.
    • (2007) PLoS Genet , vol.3
    • Hahn, M.W.1    Han, M.V.2    Han, S.G.3
  • 2
    • 9244247603 scopus 로고    scopus 로고
    • Evolving protein functional diversity in new genes of Drosophila
    • Zhang J, Dean AM, Brunet F, Long M, (2004) Evolving protein functional diversity in new genes of Drosophila. Proc Natl Acad Sci U S A 101: 16246-16250.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 16246-16250
    • Zhang, J.1    Dean, A.M.2    Brunet, F.3    Long, M.4
  • 3
    • 23944452634 scopus 로고    scopus 로고
    • Rapidly evolving genes of Drosophila: differing levels of selective pressure in testis, ovary, and head tissues between sibling species
    • Jagadeeshan S, Singh RS, (2005) Rapidly evolving genes of Drosophila: differing levels of selective pressure in testis, ovary, and head tissues between sibling species. Mol Biol Evol 22: 1793-1801.
    • (2005) Mol Biol Evol , vol.22 , pp. 1793-1801
    • Jagadeeshan, S.1    Singh, R.S.2
  • 4
    • 34047222491 scopus 로고    scopus 로고
    • Rapid evolution of outer egg membrane proteins in the Drosophila melanogaster subgroup: a case of ecologically driven evolution of female reproductive traits
    • Jagadeeshan S, Singh RS, (2007) Rapid evolution of outer egg membrane proteins in the Drosophila melanogaster subgroup: a case of ecologically driven evolution of female reproductive traits. Mol Biol Evol 24: 929-938.
    • (2007) Mol Biol Evol , vol.24 , pp. 929-938
    • Jagadeeshan, S.1    Singh, R.S.2
  • 5
    • 34547637650 scopus 로고    scopus 로고
    • Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster
    • Chen ST, Cheng HC, Barbash DA, Yang HP, (2007) Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster. PLoS Genet 3: e107.
    • (2007) PLoS Genet , vol.3
    • Chen, S.T.1    Cheng, H.C.2    Barbash, D.A.3    Yang, H.P.4
  • 6
    • 38949119483 scopus 로고    scopus 로고
    • Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila
    • Yang S, Arguello JR, Li X, Ding Y, Zhou Q, et al. (2008) Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 4: e3.
    • (2008) PLoS Genet , vol.4
    • Yang, S.1    Arguello, J.R.2    Li, X.3    Ding, Y.4    Zhou, Q.5
  • 7
    • 78650690861 scopus 로고    scopus 로고
    • A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes
    • Ding Y, Zhao L, Yang S, Jiang Y, Chen Y, et al. (2010) A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes. PLoS Genet 6: e1001255.
    • (2010) PLoS Genet , vol.6
    • Ding, Y.1    Zhao, L.2    Yang, S.3    Jiang, Y.4    Chen, Y.5
  • 9
    • 16844375659 scopus 로고    scopus 로고
    • The multiple personalities of the regulatory subunit of protein kinase CK2: CK2 dependent and CK2 independent roles reveal a secret identity for CK2beta
    • Bibby AC, Litchfield DW, (2005) The multiple personalities of the regulatory subunit of protein kinase CK2: CK2 dependent and CK2 independent roles reveal a secret identity for CK2beta. Int J Biol Sci 1: 67-79.
    • (2005) Int J Biol Sci , vol.1 , pp. 67-79
    • Bibby, A.C.1    Litchfield, D.W.2
  • 10
    • 0037269847 scopus 로고    scopus 로고
    • Protein kinase CK2: structure, regulation and role in cellular decisions of life and death
    • Litchfield DW, (2003) Protein kinase CK2: structure, regulation and role in cellular decisions of life and death. Biochem J 369: 1-15.
    • (2003) Biochem J , vol.369 , pp. 1-15
    • Litchfield, D.W.1
  • 11
    • 70349336104 scopus 로고    scopus 로고
    • Protein kinase CK2 in health and disease: Cellular functions of protein kinase CK2: a dynamic affair
    • Filhol O, Cochet C, (2009) Protein kinase CK2 in health and disease: Cellular functions of protein kinase CK2: a dynamic affair. Cell Mol Life Sci 66: 1830-1839.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 1830-1839
    • Filhol, O.1    Cochet, C.2
  • 12
    • 0034528831 scopus 로고    scopus 로고
    • The alpha and beta subunit of the nascent polypeptide-associated complex have distinct functions
    • Beatrix B, Sakai H, Wiedmann M, (2000) The alpha and beta subunit of the nascent polypeptide-associated complex have distinct functions. J Biol Chem 275: 37838-37845.
    • (2000) J Biol Chem , vol.275 , pp. 37838-37845
    • Beatrix, B.1    Sakai, H.2    Wiedmann, M.3
  • 13
    • 0033960927 scopus 로고    scopus 로고
    • bicaudal encodes the Drosophila beta NAC homolog, a component of the ribosomal translational machinery*
    • Markesich DC, Gajewski KM, Nazimiec ME, Beckingham K, (2000) bicaudal encodes the Drosophila beta NAC homolog, a component of the ribosomal translational machinery*. Development 127: 559-572.
    • (2000) Development , vol.127 , pp. 559-572
    • Markesich, D.C.1    Gajewski, K.M.2    Nazimiec, M.E.3    Beckingham, K.4
  • 14
    • 0036118865 scopus 로고    scopus 로고
    • CK2(beta)tes gene encodes a testis-specific isoform of the regulatory subunit of casein kinase 2 in Drosophila melanogaster
    • Kalmykova AI, Shevelyov YY, Polesskaya OO, Dobritsa AA, Evstafieva AG, et al. (2002) CK2(beta)tes gene encodes a testis-specific isoform of the regulatory subunit of casein kinase 2 in Drosophila melanogaster. Eur J Biochem 269: 1418-1427.
    • (2002) Eur J Biochem , vol.269 , pp. 1418-1427
    • Kalmykova, A.I.1    Shevelyov, Y.Y.2    Polesskaya, O.O.3    Dobritsa, A.A.4    Evstafieva, A.G.5
  • 16
    • 0021211997 scopus 로고
    • Cytogenetic analysis of a segment of the Y chromosome of Drosophila melanogaster
    • Hardy RW, Lindsley DL, Livak KJ, Lewis B, Siversten AL, et al. (1984) Cytogenetic analysis of a segment of the Y chromosome of Drosophila melanogaster. Genetics 107: 591-610.
    • (1984) Genetics , vol.107 , pp. 591-610
    • Hardy, R.W.1    Lindsley, D.L.2    Livak, K.J.3    Lewis, B.4    Siversten, A.L.5
  • 17
    • 0027993330 scopus 로고
    • Genetic analysis of Stellate elements of Drosophila melanogaster
    • Palumbo G, Bonaccorsi S, Robbins LG, Pimpinelli S, (1994) Genetic analysis of Stellate elements of Drosophila melanogaster. Genetics 138: 1181-1197.
    • (1994) Genetics , vol.138 , pp. 1181-1197
    • Palumbo, G.1    Bonaccorsi, S.2    Robbins, L.G.3    Pimpinelli, S.4
  • 18
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, et al. (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027.
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5
  • 19
    • 67349150000 scopus 로고    scopus 로고
    • Genetically Derepressed Nucleoplasmic Stellate Protein in Spermatocytes of D. melanogaster interacts with the catalytic subunit of protein kinase 2 and carries histone-like lysine-methylated mark
    • Egorova KS, Olenkina OM, Kibanov MV, Kalmykova AI, Gvozdev VA, et al. (2009) Genetically Derepressed Nucleoplasmic Stellate Protein in Spermatocytes of D. melanogaster interacts with the catalytic subunit of protein kinase 2 and carries histone-like lysine-methylated mark. J Mol Biol 389: 895-906.
    • (2009) J Mol Biol , vol.389 , pp. 895-906
    • Egorova, K.S.1    Olenkina, O.M.2    Kibanov, M.V.3    Kalmykova, A.I.4    Gvozdev, V.A.5
  • 20
    • 20444388986 scopus 로고    scopus 로고
    • An alien promoter capture as a primary step of the evolution of testes-expressed repeats in the Drosophila melanogaster genome
    • Usakin LA, Kogan GL, Kalmykova AI, Gvozdev VA, (2005) An alien promoter capture as a primary step of the evolution of testes-expressed repeats in the Drosophila melanogaster genome. Mol Biol Evol 22: 1555-1560.
    • (2005) Mol Biol Evol , vol.22 , pp. 1555-1560
    • Usakin, L.A.1    Kogan, G.L.2    Kalmykova, A.I.3    Gvozdev, V.A.4
  • 21
    • 0027722138 scopus 로고
    • Casein kinase II in signal transduction and cell cycle regulation
    • Litchfield DW, Luscher B, (1993) Casein kinase II in signal transduction and cell cycle regulation. Mol Cell Biochem 127-128: 187-199.
    • (1993) Mol Cell Biochem , vol.127-128 , pp. 187-199
    • Litchfield, D.W.1    Luscher, B.2
  • 22
    • 0028909420 scopus 로고
    • Protein kinases. 4. Protein kinase CK2: an enzyme with multiple substrates and a puzzling regulation
    • Allende JE, Allende CC, (1995) Protein kinases. 4. Protein kinase CK2: an enzyme with multiple substrates and a puzzling regulation. FASEB J 9: 313-323.
    • (1995) FASEB J , vol.9 , pp. 313-323
    • Allende, J.E.1    Allende, C.C.2
  • 23
    • 0037161965 scopus 로고    scopus 로고
    • Phosphorylation regulates the stability of the regulatory CK2beta subunit
    • Zhang C, Vilk G, Canton DA, Litchfield DW, (2002) Phosphorylation regulates the stability of the regulatory CK2beta subunit. Oncogene 21: 3754-3764.
    • (2002) Oncogene , vol.21 , pp. 3754-3764
    • Zhang, C.1    Vilk, G.2    Canton, D.A.3    Litchfield, D.W.4
  • 24
    • 0031001982 scopus 로고    scopus 로고
    • Heterochromatic Stellate gene cluster in Drosophila melanogaster: structure and molecular evolution
    • Tulin AV, Kogan GL, Filipp D, Balakireva MD, Gvozdev VA, (1997) Heterochromatic Stellate gene cluster in Drosophila melanogaster: structure and molecular evolution. Genetics 146: 253-262.
    • (1997) Genetics , vol.146 , pp. 253-262
    • Tulin, A.V.1    Kogan, G.L.2    Filipp, D.3    Balakireva, M.D.4    Gvozdev, V.A.5
  • 25
    • 0034075852 scopus 로고    scopus 로고
    • Molecular evolution of two paralogous tandemly repeated heterochromatic gene clusters linked to the X and Y chromosomes of Drosophila melanogaster
    • Kogan GL, Epstein VN, Aravin AA, Gvozdev VA, (2000) Molecular evolution of two paralogous tandemly repeated heterochromatic gene clusters linked to the X and Y chromosomes of Drosophila melanogaster. Mol Biol Evol 17: 697-702.
    • (2000) Mol Biol Evol , vol.17 , pp. 697-702
    • Kogan, G.L.1    Epstein, V.N.2    Aravin, A.A.3    Gvozdev, V.A.4
  • 26
    • 43549088103 scopus 로고    scopus 로고
    • Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
    • Yang HP, Barbash DA, (2008) Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol 9: R39.
    • (2008) Genome Biol , vol.9
    • Yang, H.P.1    Barbash, D.A.2
  • 27
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • Kapitonov VV, Jurka J, (2003) Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc Natl Acad Sci U S A 100: 6569-6574.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 28
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • Lai J, Li Y, Messing J, Dooner HK, (2005) Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci U S A 102: 9068-9073.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 29
    • 33846931279 scopus 로고    scopus 로고
    • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
    • Pritham EJ, Feschotte C, (2007) Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc Natl Acad Sci U S A 104: 1895-1900.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 1895-1900
    • Pritham, E.J.1    Feschotte, C.2
  • 30
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana
    • Hollister JD, Gaut BS, (2007) Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana. Mol Biol Evol 24: 2515-2524.
    • (2007) Mol Biol Evol , vol.24 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 31
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C, Pritham EJ, (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368.
    • (2007) Annu Rev Genet , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 32
    • 79951943912 scopus 로고    scopus 로고
    • Identification of a novel helitron transposon in the genome of Antarctic fish
    • Cocca E, De Iorio S, Capriglione T, (2011) Identification of a novel helitron transposon in the genome of Antarctic fish. Mol Phylogenet Evol 58: 439-446.
    • (2011) Mol Phylogenet Evol , vol.58 , pp. 439-446
    • Cocca, E.1    De Iorio, S.2    Capriglione, T.3
  • 33
    • 33645866187 scopus 로고    scopus 로고
    • Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes
    • Zhou Q, Froschauer A, Schultheis C, Schmidt C, Bienert GP, et al. (2006) Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes. Zebrafish 3: 39-52.
    • (2006) Zebrafish , vol.3 , pp. 39-52
    • Zhou, Q.1    Froschauer, A.2    Schultheis, C.3    Schmidt, C.4    Bienert, G.P.5
  • 34
    • 34848876954 scopus 로고    scopus 로고
    • Helitrons on a roll: eukaryotic rolling-circle transposons
    • Kapitonov VV, Jurka J, (2007) Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet 23: 521-529.
    • (2007) Trends Genet , vol.23 , pp. 521-529
    • Kapitonov, V.V.1    Jurka, J.2
  • 35
    • 33744460838 scopus 로고    scopus 로고
    • Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba
    • Yang HP, Hung TL, You TL, Yang TH, (2006) Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba. Genetics 173: 189-196.
    • (2006) Genetics , vol.173 , pp. 189-196
    • Yang, H.P.1    Hung, T.L.2    You, T.L.3    Yang, T.H.4
  • 37
    • 68049083425 scopus 로고    scopus 로고
    • Molecular variability of testes-specific betaNACtes genes in Drosophila melanogaster genome
    • Usakin LA, Gvozdev VA, Kogan GL, (2009) [Molecular variability of testes-specific betaNACtes genes in Drosophila melanogaster genome]. Mol Biol (Mosk) 43: 400-406.
    • (2009) Mol Biol (Mosk) , vol.43 , pp. 400-406
    • Usakin, L.A.1    Gvozdev, V.A.2    Kogan, G.L.3
  • 39
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM, (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 40
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using bootstrap
    • Felsenstein J, (1985) Confidence limits on phylogenies: An approach using bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 41
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.