메뉴 건너뛰기




Volumn 58, Issue 3, 2011, Pages 439-446

Identification of a novel helitron transposon in the genome of Antarctic fish

Author keywords

Antarctic fish; DNA transposon; Helitron; Notothenioidei

Indexed keywords

ANIMAL; ARTICLE; DNA SEQUENCE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; GENOME; MALE; MOLECULAR CLONING; OPEN READING FRAME; PERCIFORMES; PHYLOGENY; TRANSPOSON;

EID: 79951943912     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.12.020     Document Type: Article
Times cited : (18)

References (49)
  • 1
    • 0038449224 scopus 로고    scopus 로고
    • Otubains: a new family of cysteine proteases in the ubiquitin pathway
    • Balakirev M.Y., Tcherniuk S.O., Jaquinod M., Chroboczek J. Otubains: a new family of cysteine proteases in the ubiquitin pathway. EMBO Rep. 2003, 4:517-522.
    • (2003) EMBO Rep. , vol.4 , pp. 517-522
    • Balakirev, M.Y.1    Tcherniuk, S.O.2    Jaquinod, M.3    Chroboczek, J.4
  • 2
    • 77956352772 scopus 로고    scopus 로고
    • Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons
    • Bao W., Kapitonov V.V., Jurka J. Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mob. DNA 2010, 1:3.
    • (2010) Mob. DNA , vol.1 , pp. 3
    • Bao, W.1    Kapitonov, V.V.2    Jurka, J.3
  • 3
    • 0035252650 scopus 로고    scopus 로고
    • The Pif1p subfamily of helicases: region-specific DNA helicases?
    • Bessler J.B., Torredagger J.Z., Zakian V.A. The Pif1p subfamily of helicases: region-specific DNA helicases?. Trends Cell Biol. 2001, 11:60-65.
    • (2001) Trends Cell Biol. , vol.11 , pp. 60-65
    • Bessler, J.B.1    Torredagger, J.Z.2    Zakian, V.A.3
  • 4
    • 39749165104 scopus 로고    scopus 로고
    • Transposable elements as drivers of genomic and biological diversity in vertebrates
    • Böhne A., Brunet F., Galiana-Arnoux D., Schultheis C., Volff J.-N. Transposable elements as drivers of genomic and biological diversity in vertebrates. Chromosome Res. 2008, 16:203-215.
    • (2008) Chromosome Res. , vol.16 , pp. 203-215
    • Böhne, A.1    Brunet, F.2    Galiana-Arnoux, D.3    Schultheis, C.4    Volff, J.-N.5
  • 5
    • 0037036932 scopus 로고    scopus 로고
    • Chracterization of a Tc1-like transposon in the Antarctic ice-fish, Chionodraco hamatus
    • Capriglione T., Odierna G., Caputo V., Canapa A., Olmo E. Chracterization of a Tc1-like transposon in the Antarctic ice-fish, Chionodraco hamatus. Gene 2002, 295:193-198.
    • (2002) Gene , vol.295 , pp. 193-198
    • Capriglione, T.1    Odierna, G.2    Caputo, V.3    Canapa, A.4    Olmo, E.5
  • 6
    • 0030457091 scopus 로고    scopus 로고
    • Karyotype differentiation between two species of carangid fishes, genus Trachurus (Perciformes: Carangidae)
    • Caputo V., Marchegiani F., Olmo E. Karyotype differentiation between two species of carangid fishes, genus Trachurus (Perciformes: Carangidae). Mar. Biol. 1996, 127:193-199.
    • (1996) Mar. Biol. , vol.127 , pp. 193-199
    • Caputo, V.1    Marchegiani, F.2    Olmo, E.3
  • 7
    • 0030970280 scopus 로고    scopus 로고
    • Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish
    • Chen L., DeVries A.L., Cheng C.H. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. Proc. Natl. Acad. Sci. USA 1997, 94:3811-3816.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3811-3816
    • Chen, L.1    DeVries, A.L.2    Cheng, C.H.3
  • 9
    • 38149117037 scopus 로고    scopus 로고
    • Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
    • de Boer J.G., Yazawa R., Davidson W.S., Koop B.F. Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics 2007, 16:422.
    • (2007) BMC Genomics , vol.16 , pp. 422
    • de Boer, J.G.1    Yazawa, R.2    Davidson, W.S.3    Koop, B.F.4
  • 10
    • 0026323008 scopus 로고
    • Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: definition of a family of DNA repair enzymes
    • Demple B., Herman T., Chen D.S. Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: definition of a family of DNA repair enzymes. Proc. Natl. Acad. Sci. USA 1991, 88:11450-11454.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 11450-11454
    • Demple, B.1    Herman, T.2    Chen, D.S.3
  • 11
    • 77954321343 scopus 로고    scopus 로고
    • Genome enablement of the notothenioidei: genome size estimates from 11 species and BAC libraries from 2 representative taxa
    • Detrich H.W., Stuart A., Schoenborn M., Parker S.K., Methé B.A., Amemiya C.T. Genome enablement of the notothenioidei: genome size estimates from 11 species and BAC libraries from 2 representative taxa. J. Exp. Zool. (Mol. Dev. Evol.) 2010, 314:369-381.
    • (2010) J. Exp. Zool. (Mol. Dev. Evol.) , vol.314 , pp. 369-381
    • Detrich, H.W.1    Stuart, A.2    Schoenborn, M.3    Parker, S.K.4    Methé, B.A.5    Amemiya, C.T.6
  • 12
    • 70350231929 scopus 로고    scopus 로고
    • Marsupial-specific microRNAs evolved from marsupial-specific transposable elements
    • Devor E.J., Peek A.S., Lanier W., Samollow P.B. Marsupial-specific microRNAs evolved from marsupial-specific transposable elements. Gene 2009, 448:187-191.
    • (2009) Gene , vol.448 , pp. 187-191
    • Devor, E.J.1    Peek, A.S.2    Lanier, W.3    Samollow, P.B.4
  • 13
    • 0037036931 scopus 로고    scopus 로고
    • Tracking the evolutionary loss of hemoglobin expression by the white-blooded Antarctic icefishes
    • di Prisco G., Cocca E., Parker S.K., Detrich H.W. Tracking the evolutionary loss of hemoglobin expression by the white-blooded Antarctic icefishes. Gene 2002, 295:185-191.
    • (2002) Gene , vol.295 , pp. 185-191
    • di Prisco, G.1    Cocca, E.2    Parker, S.K.3    Detrich, H.W.4
  • 14
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C., Pritham E.J. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 2007, 41:331-368.
    • (2007) Annu. Rev. Genet. , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 16
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 0033428970 scopus 로고    scopus 로고
    • Helicase motifs: the engine that powers DNA unwinding
    • Hall M.C., Matson S.W. Helicase motifs: the engine that powers DNA unwinding. Mol. Microbiol. 1999, 34:867-877.
    • (1999) Mol. Microbiol. , vol.34 , pp. 867-877
    • Hall, M.C.1    Matson, S.W.2
  • 18
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana
    • Hollister J.D., Gaut B.S. Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana. Mol. Biol. Evol. 2007, 24:2515-2524.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 20
    • 0026748738 scopus 로고
    • Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
    • Ilyina T.V., Koonin E.V. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 1992, 20:3279-3285.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 3279-3285
    • Ilyina, T.V.1    Koonin, E.V.2
  • 21
    • 47049086792 scopus 로고    scopus 로고
    • PhyloWidget: web-based visualizations for the tree of life
    • Jordan G.E., Piel W.H. PhyloWidget: web-based visualizations for the tree of life. Bioinformatics 2008, 24:1641-1642.
    • (2008) Bioinformatics , vol.24 , pp. 1641-1642
    • Jordan, G.E.1    Piel, W.H.2
  • 24
    • 34848876954 scopus 로고    scopus 로고
    • Helitrons on a roll: eukaryotic rolling-circle transposons
    • Kapitonov V.V., Jurka J. Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet. 2007, 23:521-529.
    • (2007) Trends Genet. , vol.23 , pp. 521-529
    • Kapitonov, V.V.1    Jurka, J.2
  • 25
    • 0032726735 scopus 로고    scopus 로고
    • Identification of the Tol2 transposase of the medaka fish Oryzias latipes that catalyzes excision of a nonautonomous Tol2 element in zebrafish Danio rerio
    • Kawakami K., Shima A. Identification of the Tol2 transposase of the medaka fish Oryzias latipes that catalyzes excision of a nonautonomous Tol2 element in zebrafish Danio rerio. Gene 1999, 240:239-244.
    • (1999) Gene , vol.240 , pp. 239-244
    • Kawakami, K.1    Shima, A.2
  • 26
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the web: a case study using the Phyre server
    • Kelley L.A., Sternberg M.J.E. Protein structure prediction on the web: a case study using the Phyre server. Nat. Protocols 2009, 4:363-371.
    • (2009) Nat. Protocols , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.E.2
  • 27
    • 33745614284 scopus 로고    scopus 로고
    • Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces
    • Koga A., Iida A., Hori H., Shimada A., Shima A. Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces. Mol. Biol. Evol. 2006, 23:1414-1419.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1414-1419
    • Koga, A.1    Iida, A.2    Hori, H.3    Shimada, A.4    Shima, A.5
  • 28
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by helitron transposons contributes to the haplotype variability of maize
    • Lai J., Li Y., Messing J., Dooner H.K. Gene movement by helitron transposons contributes to the haplotype variability of maize. Proc. Natl. Acad. Sci. USA 2005, 102:9068-9073.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 30
    • 0033974998 scopus 로고    scopus 로고
    • A novel superfamily of predicted cysteine proteases from eukaryotes, viruses and Chlamydia pneumoniae
    • Makarova K.S., Aravind L., Koonin E.V. A novel superfamily of predicted cysteine proteases from eukaryotes, viruses and Chlamydia pneumoniae. Trends Biochem. Sci. 2000, 25:50-52.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 50-52
    • Makarova, K.S.1    Aravind, L.2    Koonin, E.V.3
  • 31
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik H.S., Burke W.D., Eickbush T.H. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 1999, 16:793-805.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 32
    • 84855621236 scopus 로고
    • Cytogenetics and morphofunctional adaptations in Notothenioid fishes. In: Battaglia, B., Bisol, P.M., Varotto, V. (Eds.), Proceedings of the 2nd Meeting on Antarctic Biology, Edizioni Universitarie Patavine
    • Morescalchi, A., 1992. Cytogenetics and morphofunctional adaptations in Notothenioid fishes. In: Battaglia, B., Bisol, P.M., Varotto, V. (Eds.), Proceedings of the 2nd Meeting on Antarctic Biology, Edizioni Universitarie Patavine, pp. 93-110.
    • (1992) , pp. 93-110
    • Morescalchi, A.1
  • 33
    • 42749086617 scopus 로고    scopus 로고
    • Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): inferences from mitochondrial and nuclear gene sequences
    • Near T.J., Cheng C.-H.C. Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): inferences from mitochondrial and nuclear gene sequences. Mol. Phylogenet. Evol. 2008, 47:832-840.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 832-840
    • Near, T.J.1    Cheng, C.-H.C.2
  • 34
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: a novel method for fast and accurate multiple sequence alignment
    • Notredame C., Higgins D.G., Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 2000, 302:205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 35
    • 0032544416 scopus 로고    scopus 로고
    • Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein
    • Orozco B.M., Hanley-Bowdoin L. Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein. J. Biol. Chem. 1998, 273:24448-24456.
    • (1998) J. Biol. Chem. , vol.273 , pp. 24448-24456
    • Orozco, B.M.1    Hanley-Bowdoin, L.2
  • 36
    • 0142026172 scopus 로고    scopus 로고
    • Vertebrate helentrons and other novel helitrons
    • Poulter R.T.M., Goodwin T.J.D., Butler M.I. Vertebrate helentrons and other novel helitrons. Gene 2003, 313:201-212.
    • (2003) Gene , vol.313 , pp. 201-212
    • Poulter, R.T.M.1    Goodwin, T.J.D.2    Butler, M.I.3
  • 37
    • 43149113564 scopus 로고    scopus 로고
    • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
    • Pritham E.J., Feschotte C. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc. Natl. Acad. Sci. 2007, 17:422-432.
    • (2007) Proc. Natl. Acad. Sci. , vol.17 , pp. 422-432
    • Pritham, E.J.1    Feschotte, C.2
  • 38
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Humana Press, S. Krawetz, S. Misener (Eds.)
    • Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Humana Press. S. Krawetz, S. Misener (Eds.).
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 40
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 2007, 8:272-285.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 33947536545 scopus 로고    scopus 로고
    • Sequence and recombination analyses of the geminivirus replication initiator protein
    • Vadivukarasi T., Girish K.R., Usha R. Sequence and recombination analyses of the geminivirus replication initiator protein. J. Biosci. 2006, 32:17-29.
    • (2006) J. Biosci. , vol.32 , pp. 17-29
    • Vadivukarasi, T.1    Girish, K.R.2    Usha, R.3
  • 44
    • 15544377813 scopus 로고    scopus 로고
    • Genome evolution and biodiversity in teleost fish
    • Volff J.-N. Genome evolution and biodiversity in teleost fish. Heredity 2005, 94:280-294.
    • (2005) Heredity , vol.94 , pp. 280-294
    • Volff, J.-N.1
  • 45
    • 0033745895 scopus 로고    scopus 로고
    • Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes
    • Volff J.-N., Körting C., Schartl M. Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes. Mol. Biol. Evol. 2000, 17:1673-1684.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1673-1684
    • Volff, J.-N.1    Körting, C.2    Schartl, M.3
  • 46
    • 0043026711 scopus 로고    scopus 로고
    • Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana
    • Wright S., Agrawal N., Bureau T. Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. Genome Res. 2003, 13:1897-1903.
    • (2003) Genome Res. , vol.13 , pp. 1897-1903
    • Wright, S.1    Agrawal, N.2    Bureau, T.3
  • 47
    • 69149101693 scopus 로고    scopus 로고
    • Structure-based discovery and description of plant and animal helitrons
    • Yang L., Bennetzen J.L. Structure-based discovery and description of plant and animal helitrons. Proc. Natl. Acad. Sci. USA 2009, 106:12832-12837.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 12832-12837
    • Yang, L.1    Bennetzen, J.L.2
  • 48
  • 49


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.